Wall clock time and date at job start Tue Mar 31 2020 14:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.38257 * 119.99832 * 59.72788 * 4 2 1 6 6 C 1.38218 * 119.99931 * 179.79086 * 5 4 2 7 7 C 1.38253 * 119.99811 * 0.46017 * 6 5 4 8 8 C 1.38207 * 120.00062 * 359.77213 * 7 6 5 9 9 C 1.50703 * 119.99760 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.46907 * 270.01726 * 9 8 7 11 11 S 1.65599 * 119.99712 * 165.00386 * 10 9 8 12 12 O 1.42107 * 104.27677 * 181.07407 * 11 10 9 13 13 O 1.42102 * 104.27790 * 308.92621 * 11 10 9 14 14 C 1.81402 * 104.45338 * 64.99930 * 11 10 9 15 15 C 1.52997 * 109.46984 * 179.97438 * 14 11 10 16 16 C 1.53006 * 109.46955 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.46995 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00703 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99708 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00085 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00059 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47530 * 89.99910 * 21 19 17 23 23 H 1.48503 * 109.47242 * 210.00044 * 21 19 17 24 24 H 1.48503 * 109.47109 * 329.99768 * 21 19 17 25 25 C 1.38207 * 120.00269 * 240.00057 * 4 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.08002 * 119.99958 * 0.02562 * 5 4 2 34 34 H 1.08006 * 119.99591 * 180.24974 * 6 5 4 35 35 H 1.08004 * 119.99494 * 179.79283 * 7 6 5 36 36 H 1.08997 * 109.47381 * 30.02129 * 9 8 7 37 37 H 1.09001 * 109.46866 * 150.02093 * 9 8 7 38 38 H 0.97002 * 120.00170 * 345.00167 * 10 9 8 39 39 H 1.08994 * 109.47079 * 300.00184 * 14 11 10 40 40 H 1.08999 * 109.47041 * 60.00204 * 14 11 10 41 41 H 1.08994 * 109.47490 * 300.00087 * 15 14 11 42 42 H 1.09008 * 109.47142 * 60.00472 * 15 14 11 43 43 H 1.09003 * 109.47038 * 300.00568 * 16 15 14 44 44 H 1.09006 * 109.46805 * 59.99765 * 16 15 14 45 45 H 0.97001 * 119.99735 * 180.02562 * 20 19 17 46 46 H 1.07997 * 120.00321 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2415 -2.4861 6 6 2.1581 -0.8905 -3.6146 7 6 2.9533 -2.0143 -3.4877 8 6 3.2879 -2.4859 -2.2324 9 6 4.1552 -3.7106 -2.0940 10 7 3.3090 -4.9057 -2.0492 11 16 3.9790 -6.4034 -2.2735 12 8 2.8767 -7.2964 -2.1900 13 8 4.7289 -6.2756 -3.4737 14 6 5.0847 -6.6222 -0.8522 15 6 5.7711 -7.9864 -0.9454 16 6 6.7042 -8.1708 0.2531 17 6 7.3808 -9.5142 0.1610 18 1 7.1670 -10.1707 -0.6695 19 6 8.2727 -9.9052 1.1370 20 7 8.8628 -11.0778 1.0569 21 14 8.6420 -8.7700 2.5738 22 1 7.6917 -9.0473 3.6808 23 1 10.0312 -9.0025 3.0441 24 1 8.4965 -7.3575 2.1388 25 6 2.8270 -1.8341 -1.1035 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.0695 0.6343 -2.5852 34 1 1.8969 -0.5217 -4.5956 35 1 3.3134 -2.5234 -4.3695 36 1 4.8308 -3.7755 -2.9469 37 1 4.7364 -3.6422 -1.1744 38 1 2.3563 -4.8197 -1.8880 39 1 5.8385 -5.8349 -0.8537 40 1 4.5059 -6.5694 0.0699 41 1 5.0171 -8.7735 -0.9437 42 1 6.3499 -8.0397 -1.8676 43 1 7.4582 -7.3836 0.2509 44 1 6.1258 -8.1172 1.1755 45 1 9.4901 -11.3530 1.7438 46 1 3.0882 -2.2029 -0.1226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356712952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:22 Heat of formation + Delta-G solvation = -102.622082 kcal Electronic energy + Delta-G solvation = -24640.440917 eV Core-core repulsion = 21040.911938 eV Total energy + Delta-G solvation = -3599.528980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64188 -38.20659 -37.18610 -37.00229 -36.49585 -35.48573 -34.24207 -31.89777 -30.71921 -30.14687 -27.95316 -26.68176 -25.38684 -23.98276 -22.97135 -22.24790 -20.57649 -20.30331 -18.97576 -18.59665 -17.82148 -17.24895 -17.20690 -16.63366 -16.34418 -16.14557 -15.89821 -15.48839 -14.92268 -14.82544 -14.68052 -14.42494 -14.19063 -14.07033 -13.84597 -13.64014 -13.33830 -13.22523 -13.20285 -13.12201 -13.10246 -12.88073 -12.78785 -12.68953 -12.54486 -12.14196 -11.99191 -11.83771 -11.63537 -11.52334 -11.48649 -11.40522 -11.29080 -10.77124 -10.40629 -9.75711 -9.55347 -8.29518 -6.35516 -0.76065 0.38000 0.49971 1.37296 1.39989 1.51586 1.84091 2.36832 2.76511 2.87302 3.05641 3.24546 3.61865 3.71253 3.77095 3.94619 3.96799 4.16849 4.28165 4.34502 4.35223 4.38075 4.42325 4.51198 4.62763 4.63480 4.72106 4.82774 4.83446 4.89916 4.96978 4.98819 5.01914 5.11659 5.17124 5.26237 5.35182 5.35500 5.41240 5.46992 5.59577 5.63144 5.68142 5.75295 6.06353 6.11528 6.25690 6.72938 7.29082 8.87478 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002502 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.704904 B =11190.255831 C =12368.348938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.085 4.085 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.121 4.121 8 C -0.102 4.102 9 C 0.146 3.854 10 N -1.105 6.105 11 S 2.625 3.375 12 O -0.996 6.996 13 O -0.992 6.992 14 C -0.608 4.608 15 C -0.105 4.105 16 C -0.005 4.005 17 C -0.544 4.544 18 H 0.029 0.971 19 C -0.001 4.001 20 N -0.953 5.953 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.236 1.236 25 C -0.109 4.109 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.424 0.576 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.267 0.733 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.925 30.656 -2.552 35.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.085 4.085 5 C -0.132 4.132 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.103 4.103 9 C 0.021 3.979 10 N -0.867 5.867 11 S 2.721 3.279 12 O -0.986 6.986 13 O -0.982 6.982 14 C -0.740 4.740 15 C -0.144 4.144 16 C -0.044 4.044 17 C -0.582 4.582 18 H 0.047 0.953 19 C -0.198 4.198 20 N -0.593 5.593 21 Si 0.779 3.221 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.159 1.159 25 C -0.128 4.128 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.259 0.741 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.804 29.952 -3.268 34.499 hybrid contribution 0.370 -0.260 0.889 0.998 sum -16.434 29.691 -2.379 34.019 Atomic orbital electron populations 1.21850 0.93851 1.01836 1.02496 1.20171 0.96302 0.96335 0.94799 1.21843 1.00946 0.94682 1.02485 1.20092 0.97337 0.95593 0.95453 1.21239 0.99800 1.00294 0.91852 1.21377 0.97730 0.95634 0.99628 1.21307 0.98481 0.96940 0.97270 1.19781 1.00060 0.96712 0.93787 1.20458 0.91825 0.81482 1.04119 1.55385 1.19523 1.21033 1.90712 1.04323 0.74520 0.72635 0.76421 1.93541 1.52259 1.64662 1.88142 1.93534 1.74617 1.85724 1.44347 1.30494 1.16134 1.06422 1.20920 1.21187 0.99071 0.93172 1.00987 1.19513 0.95011 0.95081 0.94779 1.21570 1.24992 1.02751 1.08899 0.95291 1.26144 0.95160 0.96844 1.01613 1.70093 1.30264 1.22475 1.36516 0.85573 0.77476 0.80598 0.78481 1.19009 1.21233 1.15938 1.21215 0.97568 0.95334 0.98655 0.93164 0.92232 0.91481 0.90143 0.92237 0.91503 0.93011 0.84731 0.84476 0.85772 0.89628 0.88227 0.74059 0.82484 0.82463 0.92006 0.91845 0.94784 0.95054 0.92461 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.00 71.98 0.65 -0.64 16 2 C -0.06 -0.57 3.09 -11.54 -0.04 -0.61 16 3 C -0.14 -1.22 9.01 71.98 0.65 -0.57 16 4 C -0.08 -1.10 4.78 -19.87 -0.09 -1.20 16 5 C -0.11 -1.43 8.71 22.27 0.19 -1.24 16 6 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 7 C -0.12 -1.94 9.70 22.27 0.22 -1.72 16 8 C -0.10 -1.58 5.28 -19.87 -0.10 -1.69 16 9 C 0.15 2.26 6.26 85.63 0.54 2.80 16 10 N -1.11 -20.10 5.88 -190.79 -1.12 -21.22 16 11 S 2.62 69.24 5.46 -56.49 -0.31 68.93 16 12 O -1.00 -33.42 18.08 -127.65 -2.31 -35.72 16 13 O -0.99 -32.83 17.50 -127.65 -2.23 -35.07 16 14 C -0.61 -15.20 6.07 71.98 0.44 -14.76 16 15 C -0.10 -3.95 5.16 30.60 0.16 -3.79 16 16 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 17 C -0.54 -31.49 9.66 25.60 0.25 -31.25 16 18 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 19 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 20 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 21 Si 0.96 42.96 27.47 68.60 1.88 44.85 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 25 C -0.11 -1.52 9.33 22.27 0.21 -1.31 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.49 7.37 -2.39 -0.02 0.48 16 28 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.08 0.77 7.88 -2.39 -0.02 0.75 16 30 H 0.06 0.47 7.40 -2.39 -0.02 0.46 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.13 1.23 7.10 -2.91 -0.02 1.21 16 34 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.12 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.09 1.42 7.64 -2.39 -0.02 1.40 16 37 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 38 H 0.42 6.74 8.61 -96.74 -0.83 5.91 16 39 H 0.16 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 44 H 0.03 1.30 7.57 -2.38 -0.02 1.29 16 45 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 46 H 0.14 1.49 7.95 -2.91 -0.02 1.47 16 Total: -1.00 -78.87 389.06 0.14 -78.73 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.07 Total: 16.64 kcal Atomic # 6 Polarization: -61.05 SS G_CDS: 3.86 Total: -57.19 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -0.82 Total: -81.17 kcal Atomic # 8 Polarization: -66.25 SS G_CDS: -4.54 Total: -70.79 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.85 kcal Atomic # 16 Polarization: 69.24 SS G_CDS: -0.31 Total: 68.93 kcal Total: -78.87 0.14 -78.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356712952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.892 kcal (2) G-P(sol) polarization free energy of solvation -78.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds