Wall clock time and date at job start Tue Mar 31 2020 14:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47120 * 2 1 4 4 C 1.53001 * 109.47307 * 119.99624 * 2 1 3 5 5 C 1.50693 * 109.47474 * 305.00033 * 4 2 1 6 6 C 1.38245 * 119.99978 * 89.99812 * 5 4 2 7 7 C 1.38227 * 119.99865 * 179.97438 * 6 5 4 8 8 C 1.38240 * 120.00339 * 359.97438 * 7 6 5 9 9 C 1.38239 * 119.99592 * 0.27779 * 8 7 6 10 10 C 1.38228 * 120.00167 * 270.02315 * 5 4 2 11 11 C 1.50695 * 109.46898 * 240.00093 * 2 1 3 12 12 O 1.21290 * 119.99991 * 264.99593 * 11 2 1 13 13 N 1.34783 * 120.00300 * 84.99921 * 11 2 1 14 14 C 1.39235 * 119.99819 * 175.70779 * 13 11 2 15 15 C 1.39490 * 119.82884 * 215.01766 * 14 13 11 16 16 C 1.36374 * 120.16800 * 179.76078 * 15 14 13 17 17 C 1.40869 * 119.82591 * 0.51222 * 16 15 14 18 18 C 1.41153 * 120.16500 * 179.71680 * 17 16 15 19 19 H 1.07993 * 120.00310 * 214.80319 * 18 17 16 20 20 C 1.39911 * 119.99689 * 34.80032 * 18 17 16 21 21 N 1.30876 * 119.99809 * 355.57170 * 20 18 17 22 22 Si 1.86799 * 119.99771 * 175.57373 * 20 18 17 23 23 H 1.48498 * 109.47282 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47239 * 120.00378 * 22 20 18 25 25 H 1.48504 * 109.46894 * 239.99678 * 22 20 18 26 26 C 1.40878 * 119.67503 * 359.74321 * 17 16 15 27 27 C 1.36372 * 119.82295 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.46816 * 299.99874 * 1 2 3 29 29 H 1.08990 * 109.47376 * 60.00006 * 1 2 3 30 30 H 1.08999 * 109.46830 * 180.02562 * 1 2 3 31 31 H 0.96698 * 113.99818 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47057 * 184.99445 * 4 2 1 33 33 H 1.09004 * 109.46947 * 65.00227 * 4 2 1 34 34 H 1.07995 * 119.99828 * 0.02562 * 6 5 4 35 35 H 1.08005 * 120.00058 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.00259 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.99425 * 179.72452 * 9 8 7 38 38 H 1.08000 * 120.00155 * 359.97438 * 10 5 4 39 39 H 0.96999 * 119.99297 * 355.70323 * 13 11 2 40 40 H 1.07999 * 119.91101 * 0.02562 * 15 14 13 41 41 H 1.07992 * 120.08659 * 180.25543 * 16 15 14 42 42 H 0.97000 * 119.99715 * 179.97438 * 21 20 18 43 43 H 1.07989 * 120.08491 * 179.97438 * 26 17 16 44 44 H 1.08006 * 119.91122 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.4393 -0.0859 2.4766 6 6 0.2391 -0.5526 2.9794 7 6 -0.3118 0.0298 4.1055 8 6 0.3378 1.0786 4.7292 9 6 1.5353 1.5487 4.2234 10 6 2.0880 0.9639 3.0994 11 6 2.0323 -0.7104 -1.2304 12 8 2.3208 -1.8872 -1.1760 13 7 2.1610 -0.0380 -2.3915 14 6 2.7087 -0.6699 -3.5048 15 6 3.4991 0.0562 -4.3958 16 6 4.0430 -0.5568 -5.4858 17 6 3.7960 -1.9244 -5.7165 18 6 4.3505 -2.5646 -6.8457 19 1 3.7979 -3.3431 -7.3507 20 6 5.6159 -2.1907 -7.3107 21 7 6.2484 -1.1897 -6.7533 22 14 6.4026 -3.1203 -8.7272 23 1 5.4896 -4.2012 -9.1778 24 1 6.6568 -2.1852 -9.8525 25 1 7.6874 -3.7137 -8.2770 26 6 2.9923 -2.6497 -4.8151 27 6 2.4601 -2.0243 -3.7264 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.9703 1.4236 -0.0004 32 1 3.1264 -0.6443 1.2951 33 1 1.7518 -1.7715 1.2057 34 1 -0.2677 -1.3728 2.4928 35 1 -1.2492 -0.3351 4.4985 36 1 -0.0924 1.5333 5.6093 37 1 2.0405 2.3710 4.7082 38 1 3.0256 1.3286 2.7067 39 1 1.8720 0.8860 -2.4514 40 1 3.6842 1.1055 -4.2196 41 1 4.6581 0.0056 -6.1725 42 1 7.1260 -0.9307 -7.0754 43 1 2.7983 -3.6983 -4.9858 44 1 1.8434 -2.5789 -3.0346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360184486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:26 Heat of formation + Delta-G solvation = -43.669951 kcal Electronic energy + Delta-G solvation = -26438.603759 eV Core-core repulsion = 22706.187185 eV Total energy + Delta-G solvation = -3732.416575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52110 -39.28430 -37.69788 -36.64894 -34.55789 -33.27775 -32.84342 -31.13628 -30.48268 -29.60061 -28.83754 -27.06403 -25.34446 -23.41908 -22.66577 -21.71658 -21.12121 -20.46991 -19.63913 -18.06317 -17.30961 -16.89209 -16.47807 -15.77479 -15.52233 -15.20715 -15.16544 -14.84666 -14.70366 -13.99062 -13.74363 -13.55112 -13.20745 -12.95269 -12.83705 -12.67324 -12.55595 -12.19864 -12.16750 -11.96223 -11.77842 -11.70648 -11.39659 -11.20111 -11.16085 -11.09748 -11.01575 -10.77614 -10.72951 -9.96406 -9.50389 -9.43845 -9.09387 -9.04265 -8.91300 -8.72814 -7.57500 -6.89418 -6.64322 -4.36733 1.18700 1.25542 2.45658 2.95458 3.06290 3.08712 3.13964 3.27029 3.47245 3.71122 3.96254 4.03475 4.55560 4.66588 4.67836 4.79335 4.83444 4.91491 4.96522 5.07025 5.30848 5.36429 5.56115 5.62028 5.63334 5.66366 5.75389 5.89516 5.95821 6.01568 6.17145 6.30290 6.35039 6.41009 6.49518 6.73061 6.84749 6.87527 7.04219 7.17825 7.24952 7.35006 7.61257 7.72539 7.83556 8.04068 8.23514 8.28859 8.59072 8.69200 8.90418 8.97228 10.26717 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.002256 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.846099 B =12406.638122 C =12604.768297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.129 3.871 3 O -0.547 6.547 4 C -0.096 4.096 5 C -0.068 4.068 6 C -0.115 4.115 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.121 4.121 10 C -0.104 4.104 11 C 0.473 3.527 12 O -0.527 6.527 13 N -0.639 5.639 14 C 0.000 4.000 15 C -0.119 4.119 16 C -0.142 4.142 17 C 0.100 3.900 18 C -0.460 4.460 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.811 5.811 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.206 4.206 27 C -0.085 4.085 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.380 0.620 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.401 0.599 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.277 0.723 43 H 0.096 0.904 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 6.500 17.215 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.085 3.915 3 O -0.353 6.353 4 C -0.134 4.134 5 C -0.069 4.069 6 C -0.133 4.133 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.139 4.139 10 C -0.122 4.122 11 C 0.259 3.741 12 O -0.404 6.404 13 N -0.282 5.282 14 C -0.092 4.092 15 C -0.139 4.139 16 C -0.162 4.162 17 C 0.097 3.903 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.439 5.439 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.226 4.226 27 C -0.105 4.105 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.228 0.772 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.235 0.765 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.869 5.922 17.239 20.271 hybrid contribution 1.044 -0.014 -0.577 1.193 sum -7.826 5.907 16.662 19.333 Atomic orbital electron populations 1.21829 0.90793 1.03154 1.03835 1.21325 0.96528 0.82252 0.91367 1.86556 1.27147 1.24757 1.96852 1.21098 1.00898 1.00854 0.90552 1.19699 0.95059 0.96163 0.95936 1.21102 0.95505 1.00256 0.96470 1.21113 0.99951 0.96845 0.96092 1.21118 0.95841 0.97421 1.00135 1.21124 0.96149 0.99932 0.96658 1.21019 1.00024 0.95677 0.95507 1.21235 0.79656 0.88168 0.85091 1.90701 1.49230 1.15572 1.84924 1.42996 1.60205 1.15670 1.09355 1.17308 1.06690 0.93780 0.91464 1.20326 0.98742 0.97882 0.96997 1.21199 1.01812 0.94996 0.98143 1.17745 0.89564 0.91210 0.91747 1.19542 1.01019 1.17870 1.10617 0.90531 1.25895 0.97460 0.94449 0.96825 1.69771 1.13430 1.23162 1.37491 0.86140 0.79317 0.80049 0.80433 1.18573 1.19983 1.19980 1.20812 1.06934 0.98375 0.96499 1.20388 0.99867 0.93174 0.97053 0.90369 0.91439 0.90566 0.77209 0.90242 0.88544 0.86030 0.86241 0.86416 0.86280 0.86217 0.76469 0.89040 0.85000 0.91183 0.88578 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.06 37.16 0.30 -1.25 16 2 C 0.13 1.59 1.00 -91.77 -0.09 1.50 16 3 O -0.55 -6.04 11.84 -35.23 -0.42 -6.46 16 4 C -0.10 -1.11 4.28 -27.89 -0.12 -1.23 16 5 C -0.07 -0.72 4.25 -104.63 -0.44 -1.16 16 6 C -0.12 -1.12 7.85 -39.58 -0.31 -1.43 16 7 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 8 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 10 C -0.10 -1.02 9.40 -39.59 -0.37 -1.40 16 11 C 0.47 7.90 6.52 -10.98 -0.07 7.82 16 12 O -0.53 -10.81 13.41 5.55 0.07 -10.74 16 13 N -0.64 -11.09 5.19 -9.74 -0.05 -11.14 16 14 C 0.00 0.00 6.31 -83.57 -0.53 -0.53 16 15 C -0.12 -2.70 9.90 -39.79 -0.39 -3.09 16 16 C -0.14 -3.62 8.62 -39.26 -0.34 -3.96 16 17 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 18 C -0.46 -12.23 9.03 -37.85 -0.34 -12.57 16 19 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 20 C 0.07 1.73 5.42 -17.33 -0.09 1.64 16 21 N -0.81 -21.00 10.60 55.55 0.59 -20.41 16 22 Si 0.92 18.95 29.56 -169.99 -5.03 13.93 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 27 C -0.08 -2.02 8.61 -39.79 -0.34 -2.36 16 28 H 0.08 0.82 6.14 -51.93 -0.32 0.50 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.38 3.32 9.04 45.56 0.41 3.74 16 32 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 33 H 0.10 1.21 7.63 -51.93 -0.40 0.81 16 34 H 0.12 1.06 8.03 -52.49 -0.42 0.64 16 35 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.40 5.85 8.32 -40.82 -0.34 5.51 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 42 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 43 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 44 H 0.11 2.49 6.22 -52.48 -0.33 2.17 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -30.42 366.95 -9.68 -40.10 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -5.06 Total: 15.17 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -5.32 Total: -25.98 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.54 Total: -31.56 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.34 Total: -17.20 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.42 -9.68 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360184486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.570 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds