Wall clock time and date at job start Tue Mar 31 2020 14:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47120 * 2 1 4 4 C 1.53001 * 109.47307 * 119.99624 * 2 1 3 5 5 C 1.50693 * 109.47474 * 305.00033 * 4 2 1 6 6 C 1.38245 * 119.99978 * 89.99812 * 5 4 2 7 7 C 1.38227 * 119.99865 * 179.97438 * 6 5 4 8 8 C 1.38240 * 120.00339 * 359.97438 * 7 6 5 9 9 C 1.38239 * 119.99592 * 0.27779 * 8 7 6 10 10 C 1.38228 * 120.00167 * 270.02315 * 5 4 2 11 11 C 1.50695 * 109.46898 * 240.00093 * 2 1 3 12 12 O 1.21290 * 119.99991 * 264.99593 * 11 2 1 13 13 N 1.34783 * 120.00300 * 84.99921 * 11 2 1 14 14 C 1.39235 * 119.99819 * 175.70779 * 13 11 2 15 15 C 1.39490 * 119.82884 * 215.01766 * 14 13 11 16 16 C 1.36374 * 120.16800 * 179.76078 * 15 14 13 17 17 C 1.40869 * 119.82591 * 0.51222 * 16 15 14 18 18 C 1.41153 * 120.16500 * 179.71680 * 17 16 15 19 19 H 1.07993 * 120.00310 * 214.80319 * 18 17 16 20 20 C 1.39911 * 119.99689 * 34.80032 * 18 17 16 21 21 N 1.30876 * 119.99809 * 355.57170 * 20 18 17 22 22 Si 1.86799 * 119.99771 * 175.57373 * 20 18 17 23 23 H 1.48498 * 109.47282 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47239 * 120.00378 * 22 20 18 25 25 H 1.48504 * 109.46894 * 239.99678 * 22 20 18 26 26 C 1.40878 * 119.67503 * 359.74321 * 17 16 15 27 27 C 1.36372 * 119.82295 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.46816 * 299.99874 * 1 2 3 29 29 H 1.08990 * 109.47376 * 60.00006 * 1 2 3 30 30 H 1.08999 * 109.46830 * 180.02562 * 1 2 3 31 31 H 0.96698 * 113.99818 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47057 * 184.99445 * 4 2 1 33 33 H 1.09004 * 109.46947 * 65.00227 * 4 2 1 34 34 H 1.07995 * 119.99828 * 0.02562 * 6 5 4 35 35 H 1.08005 * 120.00058 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.00259 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.99425 * 179.72452 * 9 8 7 38 38 H 1.08000 * 120.00155 * 359.97438 * 10 5 4 39 39 H 0.96999 * 119.99297 * 355.70323 * 13 11 2 40 40 H 1.07999 * 119.91101 * 0.02562 * 15 14 13 41 41 H 1.07992 * 120.08659 * 180.25543 * 16 15 14 42 42 H 0.97000 * 119.99715 * 179.97438 * 21 20 18 43 43 H 1.07989 * 120.08491 * 179.97438 * 26 17 16 44 44 H 1.08006 * 119.91122 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.4393 -0.0859 2.4766 6 6 0.2391 -0.5526 2.9794 7 6 -0.3118 0.0298 4.1055 8 6 0.3378 1.0786 4.7292 9 6 1.5353 1.5487 4.2234 10 6 2.0880 0.9639 3.0994 11 6 2.0323 -0.7104 -1.2304 12 8 2.3208 -1.8872 -1.1760 13 7 2.1610 -0.0380 -2.3915 14 6 2.7087 -0.6699 -3.5048 15 6 3.4991 0.0562 -4.3958 16 6 4.0430 -0.5568 -5.4858 17 6 3.7960 -1.9244 -5.7165 18 6 4.3505 -2.5646 -6.8457 19 1 3.7979 -3.3431 -7.3507 20 6 5.6159 -2.1907 -7.3107 21 7 6.2484 -1.1897 -6.7533 22 14 6.4026 -3.1203 -8.7272 23 1 5.4896 -4.2012 -9.1778 24 1 6.6568 -2.1852 -9.8525 25 1 7.6874 -3.7137 -8.2770 26 6 2.9923 -2.6497 -4.8151 27 6 2.4601 -2.0243 -3.7264 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.9703 1.4236 -0.0004 32 1 3.1264 -0.6443 1.2951 33 1 1.7518 -1.7715 1.2057 34 1 -0.2677 -1.3728 2.4928 35 1 -1.2492 -0.3351 4.4985 36 1 -0.0924 1.5333 5.6093 37 1 2.0405 2.3710 4.7082 38 1 3.0256 1.3286 2.7067 39 1 1.8720 0.8860 -2.4514 40 1 3.6842 1.1055 -4.2196 41 1 4.6581 0.0056 -6.1725 42 1 7.1260 -0.9307 -7.0754 43 1 2.7983 -3.6983 -4.9858 44 1 1.8434 -2.5789 -3.0346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360184486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:25 Heat of formation + Delta-G solvation = -61.416980 kcal Electronic energy + Delta-G solvation = -26439.373328 eV Core-core repulsion = 22706.187185 eV Total energy + Delta-G solvation = -3733.186144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77267 -40.26867 -39.23925 -37.88317 -36.24359 -34.71369 -34.06687 -31.85328 -31.53995 -31.37322 -30.58760 -27.91616 -27.09017 -24.72156 -23.37042 -23.27798 -22.59451 -21.77476 -20.92986 -19.41743 -19.13491 -18.19335 -17.42394 -17.06067 -16.81781 -16.53078 -16.15558 -15.97875 -15.76786 -15.67453 -15.08215 -14.65907 -14.54650 -14.22057 -14.00784 -13.85305 -13.69895 -13.57264 -13.44426 -13.25058 -13.08154 -12.96475 -12.87109 -12.77013 -12.71610 -12.45046 -11.93360 -11.83064 -11.77898 -11.64117 -11.40400 -11.22638 -10.74462 -10.41305 -9.73064 -9.52958 -9.48386 -8.76044 -8.52258 -6.34947 0.48056 0.57826 0.73646 1.11393 1.39023 1.40363 1.53821 1.68630 2.17575 2.23828 2.78166 2.94319 3.09830 3.50274 3.66160 3.80886 3.87693 4.02713 4.12880 4.23323 4.36338 4.37532 4.50005 4.50380 4.69995 4.71971 4.77856 4.85131 4.91314 4.92031 5.08840 5.12828 5.13665 5.19821 5.24455 5.32445 5.41036 5.63744 5.67465 5.69385 5.77052 5.87575 5.98605 6.10813 6.18493 6.36331 6.45754 6.66026 6.72423 6.94971 6.97312 7.29554 8.40604 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.002256 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.846099 B =12406.638122 C =12604.768297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 O -0.543 6.543 4 C -0.090 4.090 5 C -0.081 4.081 6 C -0.126 4.126 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.128 4.128 10 C -0.115 4.115 11 C 0.475 3.525 12 O -0.565 6.565 13 N -0.634 5.634 14 C 0.017 3.983 15 C -0.117 4.117 16 C -0.159 4.159 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.072 0.928 20 C 0.027 3.973 21 N -0.840 5.840 22 Si 0.989 3.011 23 H -0.261 1.261 24 H -0.263 1.263 25 H -0.269 1.269 26 C -0.221 4.221 27 C -0.096 4.096 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.392 0.608 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.418 0.582 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.285 0.715 43 H 0.096 0.904 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 7.902 18.771 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.103 3.897 3 O -0.350 6.350 4 C -0.128 4.128 5 C -0.081 4.081 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.133 4.133 11 C 0.262 3.738 12 O -0.444 6.444 13 N -0.278 5.278 14 C -0.076 4.076 15 C -0.137 4.137 16 C -0.179 4.179 17 C 0.065 3.935 18 C -0.527 4.527 19 H 0.091 0.909 20 C -0.185 4.185 21 N -0.468 5.468 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.187 1.187 25 H -0.194 1.194 26 C -0.241 4.241 27 C -0.116 4.116 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.241 0.759 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.255 0.745 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.392 7.366 18.823 22.288 hybrid contribution 1.120 -0.376 -0.865 1.464 sum -8.272 6.990 17.958 20.971 Atomic orbital electron populations 1.21852 0.89647 1.03504 1.04470 1.21129 0.97127 0.82362 0.89052 1.86557 1.28389 1.23497 1.96588 1.21001 1.00846 1.00089 0.90896 1.19620 0.95723 0.96931 0.95857 1.21259 0.95464 1.00611 0.97068 1.21399 1.00698 0.96766 0.95669 1.21462 0.95618 0.97097 1.00617 1.21412 0.96434 1.00347 0.96383 1.21198 1.00459 0.95679 0.96002 1.22136 0.78058 0.87744 0.85844 1.90689 1.50527 1.17583 1.85584 1.42943 1.60059 1.16404 1.08427 1.17359 1.04992 0.93164 0.92096 1.20566 0.97773 0.99419 0.95963 1.21183 1.02695 0.94748 0.99297 1.18057 0.90682 0.92120 0.92647 1.19750 1.02356 1.18864 1.11719 0.90945 1.26752 0.97340 0.95173 0.99256 1.69828 1.14004 1.24213 1.38757 0.85050 0.78111 0.78719 0.77125 1.18432 1.18714 1.19409 1.20938 1.07440 0.98650 0.97109 1.20506 1.00158 0.94287 0.96647 0.89227 0.91241 0.90468 0.75868 0.90460 0.89919 0.85582 0.84322 0.84240 0.84462 0.85476 0.74467 0.85798 0.86284 0.90446 0.88566 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.06 71.98 0.58 -2.24 16 2 C 0.15 3.39 1.00 -11.54 -0.01 3.38 16 3 O -0.54 -10.62 11.84 -148.98 -1.76 -12.39 16 4 C -0.09 -2.00 4.28 29.85 0.13 -1.87 16 5 C -0.08 -1.58 4.25 -19.87 -0.08 -1.66 16 6 C -0.13 -2.24 7.85 22.27 0.17 -2.06 16 7 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 8 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 9 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 10 C -0.12 -2.04 9.40 22.27 0.21 -1.83 16 11 C 0.47 15.33 6.52 87.65 0.57 15.90 16 12 O -0.56 -23.12 13.41 -3.06 -0.04 -23.16 16 13 N -0.63 -21.01 5.19 -303.10 -1.57 -22.58 16 14 C 0.02 0.75 6.31 38.57 0.24 1.00 16 15 C -0.12 -5.24 9.90 22.14 0.22 -5.02 16 16 C -0.16 -8.32 8.62 22.48 0.19 -8.12 16 17 C 0.07 3.73 5.55 -21.27 -0.12 3.61 16 18 C -0.50 -27.38 9.03 23.39 0.21 -27.17 16 19 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 20 C 0.03 1.37 5.42 85.24 0.46 1.83 16 21 N -0.84 -44.31 10.60 21.82 0.23 -44.08 16 22 Si 0.99 39.23 29.56 68.60 2.03 41.26 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 26 C -0.22 -11.58 9.74 22.48 0.22 -11.36 16 27 C -0.10 -4.63 8.61 22.13 0.19 -4.44 16 28 H 0.09 1.67 6.14 -2.39 -0.01 1.66 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.39 5.84 9.04 -74.06 -0.67 5.17 16 32 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 33 H 0.08 2.06 7.63 -2.38 -0.02 2.04 16 34 H 0.13 2.03 8.03 -2.91 -0.02 2.01 16 35 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 36 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 39 H 0.42 11.15 8.32 -92.71 -0.77 10.38 16 40 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.12 6.48 6.13 -2.91 -0.02 6.46 16 42 H 0.28 13.59 8.30 -92.71 -0.77 12.82 16 43 H 0.10 4.84 8.06 -2.92 -0.02 4.82 16 44 H 0.11 5.14 6.22 -2.91 -0.02 5.12 16 Total: -1.00 -66.89 366.95 2.34 -64.55 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: -0.40 Total: 41.53 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 3.86 Total: -45.14 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.34 Total: -66.66 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.80 Total: -35.54 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -66.89 2.34 -64.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360184486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.136 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds