Wall clock time and date at job start Tue Mar 31 2020 14:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42907 * 109.46943 * 2 1 4 4 C 1.52996 * 109.47386 * 240.00096 * 2 1 3 5 5 C 1.50705 * 109.47274 * 59.99785 * 4 2 1 6 6 C 1.38234 * 120.00233 * 269.73054 * 5 4 2 7 7 C 1.38231 * 120.00128 * 179.76646 * 6 5 4 8 8 C 1.38239 * 119.99653 * 0.50261 * 7 6 5 9 9 C 1.38233 * 120.00151 * 359.75109 * 8 7 6 10 10 C 1.38233 * 120.00130 * 359.97438 * 9 8 7 11 11 C 1.50695 * 109.47089 * 119.99776 * 2 1 3 12 12 O 1.21281 * 119.99992 * 94.99969 * 11 2 1 13 13 N 1.34773 * 120.00173 * 275.00385 * 11 2 1 14 14 C 1.39241 * 120.00012 * 175.70654 * 13 11 2 15 15 C 1.39483 * 119.83377 * 215.00598 * 14 13 11 16 16 C 1.36374 * 120.16703 * 179.71918 * 15 14 13 17 17 C 1.40869 * 119.82865 * 0.57817 * 16 15 14 18 18 C 1.41149 * 120.16784 * 179.67481 * 17 16 15 19 19 H 1.08002 * 120.00549 * 214.81112 * 18 17 16 20 20 C 1.39912 * 119.99685 * 34.80690 * 18 17 16 21 21 N 1.30875 * 119.99815 * 355.55303 * 20 18 17 22 22 Si 1.86793 * 119.99736 * 175.55182 * 20 18 17 23 23 H 1.48494 * 109.47326 * 90.00254 * 22 20 18 24 24 H 1.48502 * 109.47143 * 210.00074 * 22 20 18 25 25 H 1.48501 * 109.47322 * 329.99930 * 22 20 18 26 26 C 1.40876 * 119.67002 * 359.70293 * 17 16 15 27 27 C 1.36375 * 119.83163 * 359.97438 * 26 17 16 28 28 H 1.09008 * 109.46713 * 60.00125 * 1 2 3 29 29 H 1.08994 * 109.47161 * 299.99923 * 1 2 3 30 30 H 1.08993 * 109.47117 * 179.97438 * 1 2 3 31 31 H 0.96695 * 113.99675 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47310 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46878 * 300.00073 * 4 2 1 34 34 H 1.08000 * 119.99576 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99986 * 180.22920 * 7 6 5 36 36 H 1.07997 * 119.99571 * 179.72559 * 8 7 6 37 37 H 1.07997 * 119.99982 * 179.97438 * 9 8 7 38 38 H 1.07993 * 120.00296 * 179.97438 * 10 9 8 39 39 H 0.97003 * 119.99998 * 355.70876 * 13 11 2 40 40 H 1.07993 * 119.91281 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.08656 * 180.25638 * 16 15 14 42 42 H 0.96998 * 119.99327 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.08415 * 179.97438 * 26 17 16 44 44 H 1.07995 * 119.91626 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 6 0.3326 -0.3799 -3.0474 7 6 -0.1304 0.2749 -4.1733 8 6 0.6167 1.2919 -4.7376 9 6 1.8243 1.6576 -4.1730 10 6 2.2847 1.0065 -3.0438 11 6 2.0324 -0.7103 1.2305 12 8 2.3208 -1.8871 1.1760 13 7 2.1610 -0.0380 2.3914 14 6 2.5392 -0.7134 3.5488 15 6 2.0143 -0.3255 4.7815 16 6 2.3757 -0.9858 5.9187 17 6 3.2909 -2.0544 5.8476 18 6 3.6751 -2.7384 7.0210 19 1 4.6822 -3.1155 7.1211 20 6 2.7513 -2.9278 8.0545 21 7 1.5583 -2.3963 7.9713 22 14 3.2208 -3.9394 9.5530 23 1 3.8163 -3.0510 10.5832 24 1 2.0093 -4.5962 10.1063 25 1 4.2100 -4.9752 9.1610 26 6 3.8212 -2.4365 4.5997 27 6 3.4454 -1.7709 3.4703 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 2.9703 1.4237 0.0004 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 -0.2487 -1.1777 -2.6093 35 1 -1.0738 -0.0111 -4.6146 36 1 0.2570 1.8006 -5.6198 37 1 2.4082 2.4518 -4.6141 38 1 3.2283 1.2919 -2.6029 39 1 1.9901 0.9164 2.4207 40 1 1.3162 0.4967 4.8348 41 1 1.9653 -0.6871 6.8719 42 1 0.9177 -2.5280 8.6878 43 1 4.5237 -3.2545 4.5376 44 1 3.8508 -2.0629 2.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360184487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:30 Heat of formation + Delta-G solvation = -43.721384 kcal Electronic energy + Delta-G solvation = -26428.734158 eV Core-core repulsion = 22696.315353 eV Total energy + Delta-G solvation = -3732.418805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52181 -39.28332 -37.70064 -36.65726 -34.55633 -33.26510 -32.83944 -31.14464 -30.51948 -29.60138 -28.83639 -27.03644 -25.34636 -23.41933 -22.66956 -21.69771 -21.13652 -20.48035 -19.65596 -18.07558 -17.30967 -16.88762 -16.47636 -15.76615 -15.52525 -15.21442 -15.13949 -14.90065 -14.68855 -14.00854 -13.76148 -13.56722 -13.14493 -12.92572 -12.85176 -12.67259 -12.52415 -12.24076 -12.11506 -12.02071 -11.73826 -11.73234 -11.39161 -11.20995 -11.16761 -11.10731 -10.99553 -10.81559 -10.70620 -9.98025 -9.50825 -9.42649 -9.09408 -9.05271 -8.90078 -8.74172 -7.57236 -6.89199 -6.63766 -4.36363 1.18533 1.25101 2.46644 2.95914 3.06358 3.08781 3.12519 3.25825 3.47423 3.72664 3.96524 4.01765 4.55524 4.65396 4.68397 4.79177 4.82995 4.90725 4.95710 5.07230 5.31718 5.35550 5.56935 5.62081 5.65139 5.66889 5.75177 5.89132 5.94550 6.04329 6.17797 6.29820 6.34574 6.40650 6.48710 6.73222 6.84361 6.87722 7.04311 7.17943 7.24662 7.33236 7.61279 7.72628 7.83622 8.04014 8.23726 8.29128 8.59172 8.69289 8.90622 8.97498 10.27204 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.039350 B = 0.002220 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.388001 B =12611.040820 C =12655.780664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.130 3.870 3 O -0.547 6.547 4 C -0.096 4.096 5 C -0.068 4.068 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.104 4.104 11 C 0.473 3.527 12 O -0.527 6.527 13 N -0.640 5.640 14 C 0.000 4.000 15 C -0.119 4.119 16 C -0.141 4.141 17 C 0.100 3.900 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.811 5.811 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.206 4.206 27 C -0.085 4.085 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.378 0.622 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.401 0.599 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.278 0.722 43 H 0.096 0.904 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 8.196 -18.777 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.086 3.914 3 O -0.352 6.352 4 C -0.134 4.134 5 C -0.068 4.068 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.145 4.145 9 C -0.138 4.138 10 C -0.122 4.122 11 C 0.259 3.741 12 O -0.404 6.404 13 N -0.283 5.283 14 C -0.092 4.092 15 C -0.139 4.139 16 C -0.161 4.161 17 C 0.098 3.902 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.226 4.226 27 C -0.105 4.105 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.226 0.774 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.235 0.765 40 H 0.109 0.891 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.139 7.496 -18.681 20.372 hybrid contribution 0.488 -0.156 0.723 0.886 sum -2.651 7.340 -17.958 19.580 Atomic orbital electron populations 1.21808 0.90679 1.03252 1.03846 1.21354 0.96652 0.82107 0.91292 1.86578 1.26940 1.24852 1.96859 1.21100 1.01541 1.00134 0.90593 1.19692 0.94884 0.96352 0.95873 1.21101 0.95873 1.00192 0.96174 1.21117 0.99828 0.96626 0.96371 1.21115 0.95294 0.97935 1.00167 1.21114 0.96478 0.99874 0.96381 1.20997 0.99820 0.95643 0.95786 1.21220 0.79477 0.87892 0.85557 1.90701 1.49030 1.15929 1.84739 1.42998 1.66140 1.11496 1.07641 1.17306 1.05018 1.02229 0.84654 1.20329 1.00329 1.00990 0.92298 1.21200 1.01788 0.95855 0.97293 1.17734 0.90782 0.89740 0.91988 1.19501 0.98450 1.31776 0.99358 0.90591 1.25894 0.94501 0.95159 0.99076 1.69763 1.05029 1.36802 1.32227 0.86186 0.78904 0.80197 0.80630 1.19516 1.20293 1.18719 1.20809 1.06930 1.02531 0.92354 1.20370 0.96280 0.95982 0.97869 0.90419 0.91325 0.90517 0.77405 0.90271 0.88651 0.86027 0.86239 0.86418 0.86292 0.86293 0.76456 0.89060 0.85004 0.91118 0.88589 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.25 37.16 0.31 -1.32 16 2 C 0.13 1.60 1.01 -91.77 -0.09 1.51 16 3 O -0.55 -5.88 11.52 -35.23 -0.41 -6.28 16 4 C -0.10 -1.09 4.15 -27.88 -0.12 -1.20 16 5 C -0.07 -0.70 4.33 -104.62 -0.45 -1.16 16 6 C -0.12 -1.13 7.90 -39.59 -0.31 -1.44 16 7 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 8 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 9 C -0.12 -1.06 10.05 -39.59 -0.40 -1.45 16 10 C -0.10 -1.00 9.27 -39.58 -0.37 -1.36 16 11 C 0.47 7.90 6.52 -10.99 -0.07 7.83 16 12 O -0.53 -10.82 13.51 5.56 0.08 -10.75 16 13 N -0.64 -11.11 5.24 -9.74 -0.05 -11.16 16 14 C 0.00 0.00 6.31 -83.57 -0.53 -0.52 16 15 C -0.12 -2.72 9.90 -39.79 -0.39 -3.12 16 16 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 17 C 0.10 2.68 5.55 -106.80 -0.59 2.08 16 18 C -0.46 -12.25 9.02 -37.85 -0.34 -12.59 16 19 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 20 C 0.07 1.74 5.42 -17.33 -0.09 1.64 16 21 N -0.81 -21.08 10.60 55.55 0.59 -20.49 16 22 Si 0.92 18.98 29.56 -169.99 -5.03 13.96 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.21 -5.20 9.74 -39.26 -0.38 -5.59 16 27 C -0.09 -2.02 8.61 -39.79 -0.34 -2.36 16 28 H 0.08 0.83 6.19 -51.92 -0.32 0.51 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.38 3.04 9.04 45.56 0.41 3.45 16 32 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.10 1.17 7.81 -51.93 -0.41 0.77 16 34 H 0.12 1.07 8.04 -52.49 -0.42 0.65 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.40 5.83 8.19 -40.82 -0.33 5.50 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.13 3.50 6.13 -52.49 -0.32 3.17 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 43 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 44 H 0.11 2.46 6.22 -52.49 -0.33 2.13 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -30.58 366.97 -9.67 -40.25 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -5.07 Total: 14.91 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -5.31 Total: -25.96 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.54 Total: -31.65 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.33 Total: -17.03 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.58 -9.67 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360184487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.476 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds