Wall clock time and date at job start Tue Mar 31 2020 14:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42907 * 109.46943 * 2 1 4 4 C 1.52996 * 109.47386 * 240.00096 * 2 1 3 5 5 C 1.50705 * 109.47274 * 59.99785 * 4 2 1 6 6 C 1.38234 * 120.00233 * 269.73054 * 5 4 2 7 7 C 1.38231 * 120.00128 * 179.76646 * 6 5 4 8 8 C 1.38239 * 119.99653 * 0.50261 * 7 6 5 9 9 C 1.38233 * 120.00151 * 359.75109 * 8 7 6 10 10 C 1.38233 * 120.00130 * 359.97438 * 9 8 7 11 11 C 1.50695 * 109.47089 * 119.99776 * 2 1 3 12 12 O 1.21281 * 119.99992 * 94.99969 * 11 2 1 13 13 N 1.34773 * 120.00173 * 275.00385 * 11 2 1 14 14 C 1.39241 * 120.00012 * 175.70654 * 13 11 2 15 15 C 1.39483 * 119.83377 * 215.00598 * 14 13 11 16 16 C 1.36374 * 120.16703 * 179.71918 * 15 14 13 17 17 C 1.40869 * 119.82865 * 0.57817 * 16 15 14 18 18 C 1.41149 * 120.16784 * 179.67481 * 17 16 15 19 19 H 1.08002 * 120.00549 * 214.81112 * 18 17 16 20 20 C 1.39912 * 119.99685 * 34.80690 * 18 17 16 21 21 N 1.30875 * 119.99815 * 355.55303 * 20 18 17 22 22 Si 1.86793 * 119.99736 * 175.55182 * 20 18 17 23 23 H 1.48494 * 109.47326 * 90.00254 * 22 20 18 24 24 H 1.48502 * 109.47143 * 210.00074 * 22 20 18 25 25 H 1.48501 * 109.47322 * 329.99930 * 22 20 18 26 26 C 1.40876 * 119.67002 * 359.70293 * 17 16 15 27 27 C 1.36375 * 119.83163 * 359.97438 * 26 17 16 28 28 H 1.09008 * 109.46713 * 60.00125 * 1 2 3 29 29 H 1.08994 * 109.47161 * 299.99923 * 1 2 3 30 30 H 1.08993 * 109.47117 * 179.97438 * 1 2 3 31 31 H 0.96695 * 113.99675 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47310 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46878 * 300.00073 * 4 2 1 34 34 H 1.08000 * 119.99576 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99986 * 180.22920 * 7 6 5 36 36 H 1.07997 * 119.99571 * 179.72559 * 8 7 6 37 37 H 1.07997 * 119.99982 * 179.97438 * 9 8 7 38 38 H 1.07993 * 120.00296 * 179.97438 * 10 9 8 39 39 H 0.97003 * 119.99998 * 355.70876 * 13 11 2 40 40 H 1.07993 * 119.91281 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.08656 * 180.25638 * 16 15 14 42 42 H 0.96998 * 119.99327 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.08415 * 179.97438 * 26 17 16 44 44 H 1.07995 * 119.91626 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 6 0.3326 -0.3799 -3.0474 7 6 -0.1304 0.2749 -4.1733 8 6 0.6167 1.2919 -4.7376 9 6 1.8243 1.6576 -4.1730 10 6 2.2847 1.0065 -3.0438 11 6 2.0324 -0.7103 1.2305 12 8 2.3208 -1.8871 1.1760 13 7 2.1610 -0.0380 2.3914 14 6 2.5392 -0.7134 3.5488 15 6 2.0143 -0.3255 4.7815 16 6 2.3757 -0.9858 5.9187 17 6 3.2909 -2.0544 5.8476 18 6 3.6751 -2.7384 7.0210 19 1 4.6822 -3.1155 7.1211 20 6 2.7513 -2.9278 8.0545 21 7 1.5583 -2.3963 7.9713 22 14 3.2208 -3.9394 9.5530 23 1 3.8163 -3.0510 10.5832 24 1 2.0093 -4.5962 10.1063 25 1 4.2100 -4.9752 9.1610 26 6 3.8212 -2.4365 4.5997 27 6 3.4454 -1.7709 3.4703 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 2.9703 1.4237 0.0004 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 -0.2487 -1.1777 -2.6093 35 1 -1.0738 -0.0111 -4.6146 36 1 0.2570 1.8006 -5.6198 37 1 2.4082 2.4518 -4.6141 38 1 3.2283 1.2919 -2.6029 39 1 1.9901 0.9164 2.4207 40 1 1.3162 0.4967 4.8348 41 1 1.9653 -0.6871 6.8719 42 1 0.9177 -2.5280 8.6878 43 1 4.5237 -3.2545 4.5376 44 1 3.8508 -2.0629 2.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360184487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:29 Heat of formation + Delta-G solvation = -61.571324 kcal Electronic energy + Delta-G solvation = -26429.508190 eV Core-core repulsion = 22696.315353 eV Total energy + Delta-G solvation = -3733.192836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77340 -40.25873 -39.23941 -37.88637 -36.24364 -34.71310 -34.04430 -31.86028 -31.53216 -31.41214 -30.59712 -27.89050 -27.09451 -24.72875 -23.36772 -23.25762 -22.59685 -21.78826 -20.94849 -19.42527 -19.12919 -18.19008 -17.41770 -17.06624 -16.79237 -16.53805 -16.13460 -15.97807 -15.82144 -15.63869 -15.17825 -14.56379 -14.51499 -14.21271 -14.04514 -13.86673 -13.63899 -13.58673 -13.45531 -13.24544 -13.10975 -12.99475 -12.87454 -12.79341 -12.68337 -12.44975 -11.93178 -11.81687 -11.77340 -11.67371 -11.41282 -11.20992 -10.74155 -10.41583 -9.72599 -9.53527 -9.48300 -8.75963 -8.52047 -6.34847 0.48408 0.58295 0.74641 1.11287 1.38988 1.41289 1.52439 1.67080 2.18473 2.23960 2.78550 2.94978 3.09221 3.50357 3.65725 3.82000 3.86592 4.03054 4.12911 4.23637 4.36336 4.37038 4.49987 4.51463 4.70334 4.70625 4.76905 4.85461 4.91375 4.91905 5.09917 5.10985 5.12973 5.20376 5.24644 5.32324 5.40891 5.64083 5.67278 5.69781 5.77284 5.87438 5.98539 6.10654 6.19056 6.36270 6.46455 6.65955 6.73222 6.94915 6.97348 7.29464 8.40597 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.039350 B = 0.002220 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.388001 B =12611.040820 C =12655.780664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.149 3.851 3 O -0.542 6.542 4 C -0.089 4.089 5 C -0.081 4.081 6 C -0.128 4.128 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.127 4.127 10 C -0.114 4.114 11 C 0.475 3.525 12 O -0.565 6.565 13 N -0.634 5.634 14 C 0.018 3.982 15 C -0.119 4.119 16 C -0.159 4.159 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.073 0.927 20 C 0.026 3.974 21 N -0.841 5.841 22 Si 0.989 3.011 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.263 1.263 26 C -0.221 4.221 27 C -0.095 4.095 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.392 0.608 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.418 0.582 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.285 0.715 43 H 0.097 0.903 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 9.517 -20.258 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.105 3.895 3 O -0.350 6.350 4 C -0.127 4.127 5 C -0.081 4.081 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.145 4.145 10 C -0.132 4.132 11 C 0.262 3.738 12 O -0.443 6.443 13 N -0.279 5.279 14 C -0.076 4.076 15 C -0.139 4.139 16 C -0.179 4.179 17 C 0.065 3.935 18 C -0.527 4.527 19 H 0.091 0.909 20 C -0.186 4.186 21 N -0.468 5.468 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.187 1.187 26 C -0.241 4.241 27 C -0.115 4.115 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.242 0.758 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.256 0.744 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.771 8.864 -20.195 22.375 hybrid contribution 0.663 -0.471 0.973 1.269 sum -3.108 8.393 -19.222 21.204 Atomic orbital electron populations 1.21833 0.89988 1.03338 1.04417 1.21115 0.96909 0.82397 0.89101 1.86575 1.28406 1.23385 1.96592 1.20998 1.01570 0.99411 0.90738 1.19623 0.95553 0.97090 0.95810 1.21256 0.95925 1.00605 0.96784 1.21392 1.00643 0.96540 0.96042 1.21458 0.95094 0.97652 1.00658 1.21414 0.96824 1.00198 0.96097 1.21202 1.00256 0.95509 0.96216 1.22123 0.77867 0.87552 0.86232 1.90688 1.50341 1.17928 1.85393 1.42948 1.66089 1.12288 1.06571 1.17357 1.03082 1.01069 0.86081 1.20563 1.00316 1.01330 0.91703 1.21177 1.02458 0.96448 0.97842 1.18049 0.92020 0.90711 0.92717 1.19726 0.98962 1.33395 1.00625 0.90861 1.26763 0.94150 0.95931 1.01720 1.69828 1.05889 1.37745 1.33385 0.85093 0.78714 0.78493 0.76710 1.18389 1.19418 1.18654 1.20943 1.07366 1.03114 0.92673 1.20492 0.96872 0.96674 0.97421 0.89074 0.91472 0.90778 0.75798 0.90159 0.90025 0.85721 0.84470 0.84306 0.84384 0.85214 0.74444 0.86054 0.86340 0.90456 0.88504 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.25 71.98 0.59 -2.40 16 2 C 0.15 3.41 1.01 -11.54 -0.01 3.40 16 3 O -0.54 -10.23 11.52 -148.98 -1.72 -11.94 16 4 C -0.09 -1.92 4.15 29.85 0.12 -1.80 16 5 C -0.08 -1.54 4.33 -19.86 -0.09 -1.62 16 6 C -0.13 -2.28 7.90 22.27 0.18 -2.11 16 7 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 8 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 9 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 10 C -0.11 -1.92 9.27 22.27 0.21 -1.72 16 11 C 0.47 15.32 6.52 87.66 0.57 15.89 16 12 O -0.56 -23.06 13.51 -3.03 -0.04 -23.10 16 13 N -0.63 -21.05 5.24 -303.12 -1.59 -22.64 16 14 C 0.02 0.76 6.31 38.57 0.24 1.01 16 15 C -0.12 -5.39 9.90 22.13 0.22 -5.17 16 16 C -0.16 -8.37 8.61 22.48 0.19 -8.17 16 17 C 0.07 3.74 5.55 -21.27 -0.12 3.62 16 18 C -0.50 -27.38 9.02 23.39 0.21 -27.17 16 19 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 20 C 0.03 1.35 5.42 85.24 0.46 1.82 16 21 N -0.84 -44.59 10.60 21.82 0.23 -44.36 16 22 Si 0.99 39.27 29.56 68.60 2.03 41.30 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 26 C -0.22 -11.52 9.74 22.48 0.22 -11.30 16 27 C -0.09 -4.54 8.61 22.13 0.19 -4.34 16 28 H 0.09 1.76 6.19 -2.38 -0.01 1.74 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.39 5.21 9.04 -74.06 -0.67 4.54 16 32 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 33 H 0.08 1.99 7.81 -2.38 -0.02 1.97 16 34 H 0.12 2.05 8.04 -2.91 -0.02 2.03 16 35 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.42 11.13 8.19 -92.71 -0.76 10.37 16 40 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.12 6.49 6.13 -2.91 -0.02 6.47 16 42 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 43 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 44 H 0.11 5.13 6.22 -2.91 -0.02 5.12 16 Total: -1.00 -67.17 366.97 2.39 -64.79 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.39 Total: 41.09 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 3.87 Total: -45.14 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -1.36 Total: -67.00 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.76 Total: -35.05 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -67.17 2.39 -64.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360184487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.215 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds