Wall clock time and date at job start Tue Mar 31 2020 14:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47371 * 2 1 4 4 C 1.53005 * 109.47257 * 240.00238 * 2 1 3 5 5 C 1.50701 * 109.47259 * 120.00275 * 2 1 3 6 6 C 1.38260 * 119.99731 * 16.64012 * 5 2 1 7 7 C 1.38209 * 119.99778 * 180.25583 * 6 5 2 8 8 C 1.38262 * 120.00076 * 359.78933 * 7 6 5 9 9 C 1.38210 * 120.00129 * 359.95636 * 8 7 6 10 10 C 1.38210 * 120.00120 * 196.41143 * 5 2 1 11 11 S 1.76200 * 120.00404 * 359.97438 * 10 5 2 12 12 O 1.42100 * 106.40003 * 78.01073 * 11 10 5 13 13 O 1.42106 * 106.40077 * 305.09808 * 11 10 5 14 14 N 1.65600 * 107.22292 * 191.55766 * 11 10 5 15 15 C 1.46497 * 119.99819 * 66.07688 * 14 11 10 16 16 C 1.53005 * 109.46849 * 164.53638 * 15 14 11 17 17 C 1.52997 * 109.46842 * 180.02562 * 16 15 14 18 18 C 1.50708 * 109.46765 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99742 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99804 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00250 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00129 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46973 * 90.00126 * 22 20 18 24 24 H 1.48503 * 109.47105 * 209.99870 * 22 20 18 25 25 H 1.48500 * 109.47231 * 329.99942 * 22 20 18 26 26 H 1.09002 * 109.47178 * 299.99928 * 1 2 3 27 27 H 1.09007 * 109.47006 * 59.99690 * 1 2 3 28 28 H 1.08996 * 109.47204 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46897 * 204.31696 * 3 2 1 30 30 H 1.08997 * 109.46807 * 324.31838 * 3 2 1 31 31 H 1.09000 * 109.46764 * 84.31702 * 3 2 1 32 32 H 1.09004 * 109.46919 * 325.81547 * 4 2 1 33 33 H 1.08999 * 109.47148 * 85.81293 * 4 2 1 34 34 H 1.08995 * 109.47366 * 205.81679 * 4 2 1 35 35 H 1.07997 * 120.00123 * 0.02562 * 6 5 2 36 36 H 1.08004 * 120.00036 * 179.76838 * 7 6 5 37 37 H 1.08002 * 120.00261 * 179.97438 * 8 7 6 38 38 H 1.07998 * 120.00496 * 179.97438 * 9 8 7 39 39 H 0.96994 * 119.99664 * 246.08323 * 14 11 10 40 40 H 1.08995 * 109.47248 * 284.53378 * 15 14 11 41 41 H 1.09001 * 109.47116 * 44.53518 * 15 14 11 42 42 H 1.09004 * 109.46824 * 299.99643 * 16 15 14 43 43 H 1.09001 * 109.46923 * 59.99722 * 16 15 14 44 44 H 1.08995 * 109.47108 * 299.99649 * 17 16 15 45 45 H 1.08996 * 109.47567 * 60.00453 * 17 16 15 46 46 H 0.96991 * 120.00676 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.1811 -1.5245 1.9545 7 6 1.6404 -2.1719 3.0860 8 6 2.9522 -2.0089 3.4912 9 6 3.8045 -1.1993 2.7644 10 6 3.3452 -0.5520 1.6323 11 16 4.4318 0.4801 0.7057 12 8 4.1144 1.8187 1.0616 13 8 4.3956 0.0022 -0.6321 14 7 5.9666 0.1999 1.2610 15 6 6.5914 -1.1094 1.0575 16 6 8.0980 -0.9988 1.3007 17 6 8.7507 -2.3660 1.0876 18 6 10.2347 -2.2569 1.3265 19 1 10.6687 -1.3074 1.6032 20 6 11.0380 -3.3694 1.1929 21 7 12.3330 -3.2744 1.4019 22 14 10.2870 -5.0121 0.7165 23 1 10.2830 -5.1442 -0.7626 24 1 11.0878 -6.1131 1.3096 25 1 8.8932 -5.0849 1.2238 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.0441 1.4728 -0.4232 30 1 1.3741 2.0633 -0.5994 31 1 2.0652 1.8189 1.0226 32 1 1.3596 -1.5342 -1.5027 33 1 2.0904 -0.0174 -2.0800 34 1 3.0332 -1.1259 -1.0552 35 1 0.1564 -1.6516 1.6382 36 1 0.9745 -2.8049 3.6538 37 1 3.3110 -2.5145 4.3756 38 1 4.8291 -1.0717 3.0811 39 1 6.4516 0.9026 1.7211 40 1 6.1627 -1.8290 1.7550 41 1 6.4119 -1.4428 0.0354 42 1 8.5267 -0.2792 0.6032 43 1 8.2775 -0.6654 2.3229 44 1 8.3220 -3.0859 1.7847 45 1 8.5712 -2.6990 0.0653 46 1 12.8982 -4.0570 1.3084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360414298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:59 Heat of formation + Delta-G solvation = -38.561057 kcal Electronic energy + Delta-G solvation = -26533.704131 eV Core-core repulsion = 22936.953046 eV Total energy + Delta-G solvation = -3596.751085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28511 -37.35377 -37.22571 -36.17883 -35.53277 -33.26990 -31.68739 -31.22271 -30.30556 -27.79452 -27.32856 -26.78138 -23.61304 -23.04610 -22.85378 -20.64033 -19.90805 -19.12700 -18.33718 -17.37879 -16.87253 -16.07701 -15.95161 -15.47176 -15.06560 -14.97119 -14.71399 -14.43611 -14.21285 -14.11152 -14.02759 -13.44098 -12.85269 -12.77677 -12.62448 -12.55520 -12.44538 -12.26667 -11.98331 -11.93511 -11.91726 -11.78188 -11.37869 -11.23530 -11.13844 -10.97131 -10.75287 -10.48684 -10.43143 -10.11706 -9.88335 -9.73605 -9.57752 -9.39979 -9.24398 -9.06586 -8.57662 -6.07974 -4.06871 0.40833 0.61875 1.04641 2.92970 3.25329 3.28829 3.36404 3.38479 3.58545 4.16314 4.34799 4.41782 4.59410 4.65147 4.66360 4.76375 4.90297 5.02099 5.05835 5.21180 5.25753 5.33254 5.40157 5.46893 5.47594 5.49036 5.60981 5.64937 5.71276 5.75625 5.81069 5.85960 5.89278 6.03222 6.05982 6.13502 6.15975 6.37151 6.52722 6.55156 6.59971 6.73580 7.00402 7.19919 7.32835 7.73628 8.48720 8.96417 9.53937 11.05368 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.003316 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.891654 B = 8442.886204 C = 8938.570448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.187 4.187 4 C -0.160 4.160 5 C 0.032 3.968 6 C -0.141 4.141 7 C -0.068 4.068 8 C -0.142 4.142 9 C -0.031 4.031 10 C -0.665 4.665 11 S 2.699 3.301 12 O -0.966 6.966 13 O -0.949 6.949 14 N -1.119 6.119 15 C 0.106 3.894 16 C -0.108 4.108 17 C -0.014 4.014 18 C -0.522 4.522 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.420 0.580 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.018 0.982 45 H 0.016 0.984 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.907 4.987 1.425 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.061 4.061 3 C -0.244 4.244 4 C -0.217 4.217 5 C 0.030 3.970 6 C -0.160 4.160 7 C -0.086 4.086 8 C -0.161 4.161 9 C -0.050 4.050 10 C -0.751 4.751 11 S 2.790 3.210 12 O -0.956 6.956 13 O -0.938 6.938 14 N -0.880 5.880 15 C -0.019 4.019 16 C -0.148 4.148 17 C -0.052 4.052 18 C -0.560 4.560 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.190 1.190 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.255 0.745 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.037 0.963 45 H 0.034 0.966 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.067 5.295 0.689 26.608 hybrid contribution -0.233 -1.243 0.640 1.417 sum -26.300 4.052 1.329 26.644 Atomic orbital electron populations 1.21979 0.93005 1.02133 1.02446 1.20038 0.97321 0.95452 0.93259 1.23136 1.01850 0.94655 1.04798 1.22456 1.03829 1.00258 0.95149 1.19478 0.90982 0.92808 0.93697 1.21263 1.00331 0.98316 0.96066 1.21442 0.95693 0.96244 0.95208 1.21287 0.94089 0.99923 1.00806 1.21019 0.99876 0.92533 0.91576 1.30765 1.10745 1.20764 1.12856 1.02092 0.71436 0.73390 0.74105 1.93694 1.83217 1.33863 1.84819 1.93587 1.85984 1.81419 1.32849 1.55427 1.32609 1.23169 1.76795 1.21713 0.96805 0.81591 1.01764 1.21684 0.90134 1.01099 1.01847 1.19558 0.96869 0.92224 0.96594 1.21099 0.90122 0.97469 1.47323 0.90939 1.25034 0.94697 0.99022 0.94734 1.69907 1.04088 1.30271 1.49895 0.86788 0.79700 0.83738 0.79118 1.20173 1.21394 1.18968 0.92172 0.91662 0.91965 0.92161 0.90418 0.89342 0.93025 0.91588 0.87880 0.84769 0.85339 0.85036 0.84298 0.74534 0.92130 0.90200 0.91639 0.91875 0.96345 0.96598 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 7.07 37.15 0.26 -0.86 16 2 C -0.06 -0.66 0.74 -155.66 -0.12 -0.78 16 3 C -0.19 -2.27 6.46 37.16 0.24 -2.03 16 4 C -0.16 -1.87 7.76 37.16 0.29 -1.58 16 5 C 0.03 0.37 4.52 -104.62 -0.47 -0.10 16 6 C -0.14 -1.37 9.11 -39.58 -0.36 -1.73 16 7 C -0.07 -0.60 10.05 -39.58 -0.40 -1.00 16 8 C -0.14 -1.39 10.05 -39.58 -0.40 -1.79 16 9 C -0.03 -0.35 8.84 -39.58 -0.35 -0.70 16 10 C -0.67 -8.32 5.48 -39.58 -0.22 -8.54 16 11 S 2.70 36.55 3.68 -107.50 -0.40 36.16 16 12 O -0.97 -14.44 14.05 -57.17 -0.80 -15.24 16 13 O -0.95 -14.49 11.89 -57.17 -0.68 -15.17 16 14 N -1.12 -14.29 5.16 -10.61 -0.05 -14.34 16 15 C 0.11 1.55 5.81 -4.04 -0.02 1.53 16 16 C -0.11 -1.94 5.30 -26.73 -0.14 -2.08 16 17 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 18 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 19 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 20 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 21 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 22 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.06 0.47 8.12 -51.92 -0.42 0.04 16 28 H 0.06 0.43 6.77 -51.93 -0.35 0.08 16 29 H 0.06 0.82 3.57 -26.69 -0.10 0.73 16 30 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 31 H 0.09 1.12 6.52 -51.93 -0.34 0.78 16 32 H 0.05 0.51 7.88 -51.93 -0.41 0.10 16 33 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 34 H 0.10 1.41 4.86 -51.93 -0.25 1.16 16 35 H 0.13 0.98 5.96 -52.49 -0.31 0.67 16 36 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.14 1.39 6.17 -52.49 -0.32 1.06 16 39 H 0.42 4.65 8.66 -34.46 -0.30 4.35 16 40 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 41 H 0.08 1.19 7.72 -51.93 -0.40 0.79 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 45 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -33.12 357.50 -9.50 -42.63 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.83 Total: 3.77 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -2.23 Total: -33.05 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.72 Total: -41.03 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.48 Total: -30.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 16 Polarization: 36.55 SS G_CDS: -0.40 Total: 36.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.12 -9.50 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360414298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.064 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds