Wall clock time and date at job start Tue Mar 31 2020 14:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47371 * 2 1 4 4 C 1.53005 * 109.47257 * 240.00238 * 2 1 3 5 5 C 1.50701 * 109.47259 * 120.00275 * 2 1 3 6 6 C 1.38260 * 119.99731 * 16.64012 * 5 2 1 7 7 C 1.38209 * 119.99778 * 180.25583 * 6 5 2 8 8 C 1.38262 * 120.00076 * 359.78933 * 7 6 5 9 9 C 1.38210 * 120.00129 * 359.95636 * 8 7 6 10 10 C 1.38210 * 120.00120 * 196.41143 * 5 2 1 11 11 S 1.76200 * 120.00404 * 359.97438 * 10 5 2 12 12 O 1.42100 * 106.40003 * 78.01073 * 11 10 5 13 13 O 1.42106 * 106.40077 * 305.09808 * 11 10 5 14 14 N 1.65600 * 107.22292 * 191.55766 * 11 10 5 15 15 C 1.46497 * 119.99819 * 66.07688 * 14 11 10 16 16 C 1.53005 * 109.46849 * 164.53638 * 15 14 11 17 17 C 1.52997 * 109.46842 * 180.02562 * 16 15 14 18 18 C 1.50708 * 109.46765 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99742 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99804 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00250 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00129 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46973 * 90.00126 * 22 20 18 24 24 H 1.48503 * 109.47105 * 209.99870 * 22 20 18 25 25 H 1.48500 * 109.47231 * 329.99942 * 22 20 18 26 26 H 1.09002 * 109.47178 * 299.99928 * 1 2 3 27 27 H 1.09007 * 109.47006 * 59.99690 * 1 2 3 28 28 H 1.08996 * 109.47204 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46897 * 204.31696 * 3 2 1 30 30 H 1.08997 * 109.46807 * 324.31838 * 3 2 1 31 31 H 1.09000 * 109.46764 * 84.31702 * 3 2 1 32 32 H 1.09004 * 109.46919 * 325.81547 * 4 2 1 33 33 H 1.08999 * 109.47148 * 85.81293 * 4 2 1 34 34 H 1.08995 * 109.47366 * 205.81679 * 4 2 1 35 35 H 1.07997 * 120.00123 * 0.02562 * 6 5 2 36 36 H 1.08004 * 120.00036 * 179.76838 * 7 6 5 37 37 H 1.08002 * 120.00261 * 179.97438 * 8 7 6 38 38 H 1.07998 * 120.00496 * 179.97438 * 9 8 7 39 39 H 0.96994 * 119.99664 * 246.08323 * 14 11 10 40 40 H 1.08995 * 109.47248 * 284.53378 * 15 14 11 41 41 H 1.09001 * 109.47116 * 44.53518 * 15 14 11 42 42 H 1.09004 * 109.46824 * 299.99643 * 16 15 14 43 43 H 1.09001 * 109.46923 * 59.99722 * 16 15 14 44 44 H 1.08995 * 109.47108 * 299.99649 * 17 16 15 45 45 H 1.08996 * 109.47567 * 60.00453 * 17 16 15 46 46 H 0.96991 * 120.00676 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.1811 -1.5245 1.9545 7 6 1.6404 -2.1719 3.0860 8 6 2.9522 -2.0089 3.4912 9 6 3.8045 -1.1993 2.7644 10 6 3.3452 -0.5520 1.6323 11 16 4.4318 0.4801 0.7057 12 8 4.1144 1.8187 1.0616 13 8 4.3956 0.0022 -0.6321 14 7 5.9666 0.1999 1.2610 15 6 6.5914 -1.1094 1.0575 16 6 8.0980 -0.9988 1.3007 17 6 8.7507 -2.3660 1.0876 18 6 10.2347 -2.2569 1.3265 19 1 10.6687 -1.3074 1.6032 20 6 11.0380 -3.3694 1.1929 21 7 12.3330 -3.2744 1.4019 22 14 10.2870 -5.0121 0.7165 23 1 10.2830 -5.1442 -0.7626 24 1 11.0878 -6.1131 1.3096 25 1 8.8932 -5.0849 1.2238 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.0441 1.4728 -0.4232 30 1 1.3741 2.0633 -0.5994 31 1 2.0652 1.8189 1.0226 32 1 1.3596 -1.5342 -1.5027 33 1 2.0904 -0.0174 -2.0800 34 1 3.0332 -1.1259 -1.0552 35 1 0.1564 -1.6516 1.6382 36 1 0.9745 -2.8049 3.6538 37 1 3.3110 -2.5145 4.3756 38 1 4.8291 -1.0717 3.0811 39 1 6.4516 0.9026 1.7211 40 1 6.1627 -1.8290 1.7550 41 1 6.4119 -1.4428 0.0354 42 1 8.5267 -0.2792 0.6032 43 1 8.2775 -0.6654 2.3229 44 1 8.3220 -3.0859 1.7847 45 1 8.5712 -2.6990 0.0653 46 1 12.8982 -4.0570 1.3084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360414298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:58 Heat of formation + Delta-G solvation = -59.976123 kcal Electronic energy + Delta-G solvation = -26534.632758 eV Core-core repulsion = 22936.953046 eV Total energy + Delta-G solvation = -3597.679712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04709 -38.36669 -38.22160 -37.43791 -36.52590 -35.12960 -33.01788 -32.41476 -31.05666 -28.80525 -28.25360 -28.15477 -24.50848 -24.38037 -23.78380 -22.17047 -20.89984 -20.06445 -19.26095 -18.98008 -18.31955 -17.27358 -16.73690 -16.37644 -16.25700 -16.19170 -15.84779 -15.56641 -15.31250 -15.11404 -14.88124 -14.77494 -14.33763 -13.97862 -13.74805 -13.56370 -13.43686 -13.35543 -13.13821 -13.02906 -12.78670 -12.71299 -12.69923 -12.57637 -12.28142 -12.06039 -11.83370 -11.66299 -11.65846 -11.52451 -11.33881 -11.31412 -11.21569 -10.73773 -10.52823 -10.31712 -9.82462 -8.26702 -6.31023 -0.61812 -0.16184 0.30256 1.40249 1.40798 1.52650 1.90628 2.39058 2.50748 2.59800 3.09313 3.39534 3.57301 3.63371 3.83175 3.88678 3.96439 4.11320 4.18723 4.21440 4.29136 4.36597 4.41864 4.52955 4.62693 4.64378 4.72738 4.80244 4.87568 4.89832 4.92676 4.97206 5.06214 5.07136 5.10718 5.13286 5.21042 5.29161 5.39138 5.42493 5.52956 5.60431 5.63864 5.68758 5.89429 5.99303 6.30877 6.77806 7.33735 8.90106 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.003316 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.891654 B = 8442.886204 C = 8938.570448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 C -0.193 4.193 4 C -0.162 4.162 5 C 0.013 3.987 6 C -0.143 4.143 7 C -0.063 4.063 8 C -0.148 4.148 9 C -0.048 4.048 10 C -0.680 4.680 11 S 2.708 3.292 12 O -0.987 6.987 13 O -0.971 6.971 14 N -1.116 6.116 15 C 0.115 3.885 16 C -0.103 4.103 17 C -0.015 4.015 18 C -0.532 4.532 19 H 0.033 0.967 20 C 0.001 3.999 21 N -0.954 5.954 22 Si 0.949 3.051 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.238 1.238 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.426 0.574 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.021 0.979 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.428 3.071 2.086 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 C -0.250 4.250 4 C -0.219 4.219 5 C 0.011 3.989 6 C -0.162 4.162 7 C -0.081 4.081 8 C -0.166 4.166 9 C -0.067 4.067 10 C -0.769 4.769 11 S 2.802 3.198 12 O -0.977 6.977 13 O -0.961 6.961 14 N -0.877 5.877 15 C -0.011 4.011 16 C -0.142 4.142 17 C -0.054 4.054 18 C -0.570 4.570 19 H 0.051 0.949 20 C -0.195 4.195 21 N -0.595 5.595 22 Si 0.772 3.228 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.161 1.161 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.163 0.837 39 H 0.262 0.738 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.583 3.423 1.340 29.810 hybrid contribution 0.879 -0.567 0.484 1.152 sum -28.704 2.856 1.823 28.903 Atomic orbital electron populations 1.21994 0.90591 1.03507 1.03283 1.20063 0.99277 0.94123 0.92749 1.23156 1.01244 0.96314 1.04305 1.22436 1.03163 1.00762 0.95571 1.19713 0.91048 0.93733 0.94370 1.21618 1.01216 0.97395 0.95922 1.21896 0.95802 0.95613 0.94781 1.21654 0.94402 0.99342 1.01233 1.21239 1.00739 0.93128 0.91595 1.30482 1.11001 1.21713 1.13679 1.01558 0.71411 0.73109 0.73755 1.93665 1.83465 1.35464 1.85123 1.93566 1.86283 1.81672 1.34604 1.55256 1.32727 1.22852 1.76911 1.21528 0.94468 0.82763 1.02323 1.21517 0.92227 0.98427 1.02003 1.19534 0.93677 0.95093 0.97057 1.21508 0.93138 0.95923 1.46417 0.94907 1.26049 0.95029 1.03622 0.94821 1.70072 1.05949 1.31640 1.51850 0.85679 0.80025 0.78090 0.79011 1.19493 1.21226 1.16097 0.91438 0.90826 0.90277 0.94172 0.88852 0.90262 0.91256 0.92090 0.90020 0.82220 0.81946 0.82760 0.83700 0.73760 0.89905 0.90516 0.92630 0.91325 0.94987 0.96045 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.07 71.98 0.51 -1.33 16 2 C -0.06 -1.27 0.74 -52.93 -0.04 -1.31 16 3 C -0.19 -4.65 6.46 71.98 0.47 -4.18 16 4 C -0.16 -3.66 7.76 71.98 0.56 -3.10 16 5 C 0.01 0.28 4.52 -19.87 -0.09 0.19 16 6 C -0.14 -2.29 9.11 22.27 0.20 -2.09 16 7 C -0.06 -0.87 10.05 22.27 0.22 -0.65 16 8 C -0.15 -2.40 10.05 22.27 0.22 -2.17 16 9 C -0.05 -0.99 8.84 22.27 0.20 -0.80 16 10 C -0.68 -16.28 5.48 22.27 0.12 -16.15 16 11 S 2.71 73.78 3.68 -56.49 -0.21 73.57 16 12 O -0.99 -30.24 14.05 -128.00 -1.80 -32.04 16 13 O -0.97 -30.27 11.89 -128.00 -1.52 -31.79 16 14 N -1.12 -28.18 5.16 -187.49 -0.97 -29.15 16 15 C 0.11 3.21 5.81 86.38 0.50 3.72 16 16 C -0.10 -3.62 5.30 30.60 0.16 -3.46 16 17 C -0.02 -0.67 4.04 29.85 0.12 -0.55 16 18 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 19 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 20 C 0.00 0.07 5.47 84.65 0.46 0.53 16 21 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 22 Si 0.95 43.13 27.47 68.60 1.88 45.02 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 26 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 27 H 0.07 0.86 8.12 -2.38 -0.02 0.84 16 28 H 0.08 0.79 6.77 -2.39 -0.02 0.77 16 29 H 0.04 1.13 3.57 -18.43 -0.07 1.06 16 30 H 0.09 1.83 7.90 -2.39 -0.02 1.81 16 31 H 0.08 2.02 6.52 -2.39 -0.02 2.00 16 32 H 0.07 1.25 7.88 -2.39 -0.02 1.23 16 33 H 0.06 1.38 7.90 -2.39 -0.02 1.36 16 34 H 0.08 2.23 4.86 -2.41 -0.01 2.22 16 35 H 0.16 1.63 5.96 -2.91 -0.02 1.61 16 36 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.15 2.64 6.17 -2.91 -0.02 2.62 16 39 H 0.43 9.44 8.66 -96.75 -0.84 8.61 16 40 H 0.08 1.97 6.57 -2.39 -0.02 1.95 16 41 H 0.08 2.22 7.72 -2.39 -0.02 2.20 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 45 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 46 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -73.64 357.50 1.59 -72.05 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.04 Total: 22.66 kcal Atomic # 6 Polarization: -64.88 SS G_CDS: 3.87 Total: -61.02 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -0.67 Total: -88.45 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -3.32 Total: -63.83 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.02 kcal Atomic # 16 Polarization: 73.78 SS G_CDS: -0.21 Total: 73.57 kcal Total: -73.64 1.59 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360414298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.070 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds