Wall clock time and date at job start Tue Mar 31 2020 14:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34895 * 117.00264 * 2 1 4 4 O 1.21631 * 119.99732 * 0.02562 * 3 2 1 5 5 C 1.46385 * 120.00381 * 180.02562 * 3 2 1 6 6 C 1.36754 * 125.46636 * 180.02562 * 5 3 2 7 7 C 1.37413 * 113.28641 * 180.02562 * 6 5 3 8 8 C 1.50709 * 122.43896 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.46961 * 83.89547 * 8 7 6 10 10 C 1.46895 * 111.00032 * 189.64147 * 9 8 7 11 11 C 1.50692 * 109.47560 * 170.03174 * 10 9 8 12 12 H 1.08003 * 119.99775 * 2.16367 * 11 10 9 13 13 C 1.37877 * 120.00681 * 182.15659 * 11 10 9 14 14 N 1.31507 * 120.00652 * 179.97438 * 13 11 10 15 15 Si 1.86811 * 119.99641 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46796 * 89.99952 * 15 13 11 17 17 H 1.48497 * 109.47176 * 209.99806 * 15 13 11 18 18 H 1.48494 * 109.46882 * 329.99875 * 15 13 11 19 19 C 1.46903 * 110.99977 * 65.69501 * 9 8 7 20 20 C 1.52993 * 109.47541 * 80.49035 * 19 9 8 21 21 C 1.53002 * 109.46795 * 77.72501 * 20 19 9 22 22 C 1.53001 * 109.47198 * 197.72035 * 20 19 9 23 23 C 1.52996 * 109.47426 * 317.72593 * 20 19 9 24 24 C 1.33857 * 115.11450 * 359.97438 * 7 6 5 25 25 S 1.70616 * 110.96058 * 0.02562 * 24 7 6 26 26 H 1.08997 * 109.47283 * 299.99356 * 1 2 3 27 27 H 1.09000 * 109.47531 * 59.99607 * 1 2 3 28 28 H 1.09005 * 109.47763 * 179.97438 * 1 2 3 29 29 H 1.07999 * 123.35428 * 359.76715 * 6 5 3 30 30 H 1.08999 * 109.46622 * 203.89371 * 8 7 6 31 31 H 1.09002 * 109.47139 * 323.89344 * 8 7 6 32 32 H 1.09007 * 109.47458 * 290.03962 * 10 9 8 33 33 H 1.09001 * 109.47197 * 50.03148 * 10 9 8 34 34 H 0.97003 * 120.00273 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.47147 * 200.49495 * 19 9 8 36 36 H 1.09006 * 109.47096 * 320.49081 * 19 9 8 37 37 H 1.08992 * 109.47729 * 22.22018 * 21 20 19 38 38 H 1.09003 * 109.47212 * 142.22478 * 21 20 19 39 39 H 1.09005 * 109.47213 * 262.21645 * 21 20 19 40 40 H 1.09001 * 109.46919 * 60.00388 * 22 20 19 41 41 H 1.09006 * 109.47037 * 180.02562 * 22 20 19 42 42 H 1.08994 * 109.47349 * 300.00355 * 22 20 19 43 43 H 1.08996 * 109.47308 * 63.47279 * 23 20 19 44 44 H 1.08995 * 109.47482 * 183.47542 * 23 20 19 45 45 H 1.09000 * 109.46783 * 303.47872 * 23 20 19 46 46 H 1.08004 * 124.51685 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5262 1.2785 -0.0006 6 6 4.2603 2.4324 -0.0001 7 6 5.6169 2.2132 -0.0014 8 6 6.6178 3.3398 -0.0018 9 7 6.8341 3.8031 1.3753 10 6 7.6229 5.0421 1.3962 11 6 7.6178 5.6175 2.7890 12 1 7.1115 5.0951 3.5872 13 6 8.2595 6.8108 3.0443 14 7 8.2547 7.3132 4.2597 15 14 9.1349 7.7147 1.6635 16 1 8.1877 8.6507 1.0062 17 1 10.2800 8.4790 2.2201 18 1 9.6326 6.7330 0.6668 19 6 7.4726 2.7589 2.1879 20 6 8.9775 2.7477 1.9130 21 6 9.6415 3.9045 2.6625 22 6 9.5733 1.4218 2.3906 23 6 9.2229 2.9055 0.4111 24 6 5.9844 0.9260 -0.0023 25 16 4.6199 -0.0983 -0.0023 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0277 -0.0005 29 1 3.8180 3.4176 -0.0030 30 1 7.5611 2.9875 -0.4190 31 1 6.2379 4.1632 -0.6067 32 1 8.6482 4.8253 1.0964 33 1 7.1866 5.7623 0.7040 34 1 8.7059 8.1529 4.4392 35 1 7.2976 2.9628 3.2442 36 1 7.0489 1.7882 1.9302 37 1 9.0071 4.2102 3.4944 38 1 10.6104 3.5820 3.0438 39 1 9.7802 4.7456 1.9832 40 1 9.1003 0.5977 1.8566 41 1 10.6457 1.4140 2.1952 42 1 9.3986 1.3095 3.4606 43 1 8.8535 3.8769 0.0826 44 1 10.2915 2.8356 0.2082 45 1 8.6984 2.1163 -0.1276 46 1 7.0081 0.5819 -0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411287380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:48 Heat of formation + Delta-G solvation = 0.384815 kcal Electronic energy + Delta-G solvation = -26497.044483 eV Core-core repulsion = 22901.982217 eV Total energy + Delta-G solvation = -3595.062265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42469 -39.87508 -37.74559 -36.39284 -33.58607 -32.64201 -30.70082 -28.71630 -27.98949 -27.74487 -26.46924 -25.95576 -24.50350 -23.63234 -21.07537 -20.22595 -19.10152 -18.62884 -18.12392 -17.00557 -16.92974 -16.49535 -16.11392 -15.28780 -15.01855 -14.67624 -14.20582 -13.93379 -13.70389 -13.56719 -13.35604 -13.28846 -12.73224 -12.57038 -12.48270 -12.34927 -12.11935 -11.70295 -11.55749 -11.33170 -11.23460 -11.02719 -10.98967 -10.98036 -10.81959 -10.68229 -10.55727 -10.43329 -10.04162 -9.92472 -9.75109 -9.58980 -9.19448 -8.88686 -8.46661 -8.40117 -7.06938 -6.02981 -3.92779 0.37934 1.45626 1.88788 2.22178 2.52437 2.94827 3.26904 3.33724 3.36331 4.41954 4.74402 4.89515 4.90927 4.97930 5.02500 5.16411 5.26034 5.30321 5.32604 5.35525 5.47218 5.53022 5.72123 5.82216 5.87234 5.93025 6.04979 6.06031 6.11928 6.16464 6.22716 6.33351 6.42102 6.45270 6.53306 6.61474 6.72187 6.82176 6.92499 6.99551 7.22515 7.59079 7.62853 7.68774 7.94097 8.08404 8.68964 9.04384 9.58289 11.10191 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003625 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.331585 B = 7723.249422 C = 8734.343763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.359 6.359 3 C 0.542 3.458 4 O -0.499 6.499 5 C -0.275 4.275 6 C -0.008 4.008 7 C -0.094 4.094 8 C 0.067 3.933 9 N -0.516 5.516 10 C 0.127 3.873 11 C -0.489 4.489 12 H 0.080 0.920 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.864 3.136 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.267 1.267 19 C 0.075 3.925 20 C -0.096 4.096 21 C -0.145 4.145 22 C -0.133 4.133 23 C -0.165 4.165 24 C -0.222 4.222 25 S 0.219 5.781 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.016 0.984 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.019 0.981 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 -17.439 -10.412 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.386 3.614 4 O -0.388 6.388 5 C -0.393 4.393 6 C -0.042 4.042 7 C -0.107 4.107 8 C -0.063 4.063 9 N -0.238 5.238 10 C 0.002 3.998 11 C -0.527 4.527 12 H 0.098 0.902 13 C -0.132 4.132 14 N -0.540 5.540 15 Si 0.692 3.308 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.053 4.053 20 C -0.097 4.097 21 C -0.201 4.201 22 C -0.191 4.191 23 C -0.221 4.221 24 C -0.361 4.361 25 S 0.489 5.511 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.174 0.826 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.642 -18.487 -10.100 22.088 hybrid contribution 1.349 2.126 -0.942 2.688 sum -5.293 -16.361 -11.042 20.436 Atomic orbital electron populations 1.23270 0.75778 1.03689 1.02782 1.86573 1.23720 1.32440 1.84876 1.19682 0.87218 0.81614 0.72844 1.90906 1.65971 1.35811 1.46132 1.23349 0.93587 0.98816 1.23562 1.20757 0.92277 0.98478 0.92734 1.18805 0.94334 0.94750 1.02801 1.21681 0.96682 0.94427 0.93496 1.62197 1.49631 1.04601 1.07365 1.21094 0.93074 0.86782 0.98818 1.20846 1.32758 1.05669 0.93426 0.90241 1.24797 0.96472 0.97006 0.94953 1.69870 1.44347 1.20198 1.19589 0.87053 0.79903 0.80580 0.83245 1.20372 1.21372 1.19229 1.22227 0.89939 0.93798 0.99335 1.21156 0.97919 0.95924 0.94747 1.22633 0.98669 0.96071 1.02772 1.21852 0.99830 0.96460 1.00954 1.22747 1.00586 1.02209 0.96569 1.25385 1.04584 0.97815 1.08274 1.82981 0.93207 1.07110 1.67844 0.91672 0.91801 0.87978 0.82597 0.90796 0.90651 0.94820 0.96591 0.92780 0.90469 0.92797 0.88081 0.96153 0.91677 0.93876 0.93404 0.92732 0.90127 0.93627 0.93004 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.23 10.42 -41.03 -0.43 -4.66 16 3 C 0.54 7.72 7.92 34.01 0.27 7.99 16 4 O -0.50 -8.34 16.64 -19.37 -0.32 -8.67 16 5 C -0.28 -3.77 6.45 -36.84 -0.24 -4.01 16 6 C -0.01 -0.12 9.80 -40.42 -0.40 -0.51 16 7 C -0.09 -1.32 4.66 -106.46 -0.50 -1.81 16 8 C 0.07 1.04 4.65 -4.97 -0.02 1.02 16 9 N -0.52 -9.86 4.70 -237.52 -1.12 -10.98 16 10 C 0.13 2.81 2.74 -4.98 -0.01 2.80 16 11 C -0.49 -12.77 5.80 -34.44 -0.20 -12.97 16 12 H 0.08 2.32 7.26 -52.48 -0.38 1.94 16 13 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 14 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 15 Si 0.86 20.69 26.53 -169.99 -4.51 16.18 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.02 6.59 56.52 0.37 -5.65 16 19 C 0.08 1.33 4.58 -3.83 -0.02 1.31 16 20 C -0.10 -1.57 0.77 -154.51 -0.12 -1.69 16 21 C -0.15 -2.86 7.23 37.16 0.27 -2.59 16 22 C -0.13 -1.83 8.17 37.16 0.30 -1.53 16 23 C -0.16 -2.48 6.33 37.16 0.24 -2.24 16 24 C -0.22 -2.62 9.03 29.19 0.26 -2.35 16 25 S 0.22 2.39 22.92 -107.50 -2.46 -0.08 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.16 2.40 8.06 -52.49 -0.42 1.97 16 30 H 0.07 1.06 3.17 -51.93 -0.16 0.90 16 31 H 0.08 1.18 7.94 -51.93 -0.41 0.77 16 32 H 0.03 0.74 1.38 -51.93 -0.07 0.67 16 33 H 0.02 0.37 7.25 -51.93 -0.38 -0.01 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.08 1.56 6.88 -51.93 -0.36 1.20 16 36 H 0.05 0.84 5.45 -51.93 -0.28 0.56 16 37 H 0.10 2.32 5.09 -51.93 -0.26 2.06 16 38 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 39 H 0.06 1.39 4.22 -51.93 -0.22 1.17 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.63 8.12 -51.93 -0.42 0.20 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.36 3.82 -51.93 -0.20 1.16 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.67 6.09 -51.93 -0.32 0.35 16 46 H 0.17 1.70 7.61 -52.48 -0.40 1.30 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -30.07 357.16 -8.26 -38.33 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.39 Total: 3.71 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 0.81 Total: -13.43 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.34 Total: -36.77 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.75 Total: -13.33 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.51 Total: 16.18 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.46 Total: -0.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.07 -8.26 -38.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411287380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.720 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds