Wall clock time and date at job start Tue Mar 31 2020 14:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34895 * 117.00264 * 2 1 4 4 O 1.21631 * 119.99732 * 0.02562 * 3 2 1 5 5 C 1.46385 * 120.00381 * 180.02562 * 3 2 1 6 6 C 1.36754 * 125.46636 * 180.02562 * 5 3 2 7 7 C 1.37413 * 113.28641 * 180.02562 * 6 5 3 8 8 C 1.50709 * 122.43896 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.46961 * 83.89547 * 8 7 6 10 10 C 1.46895 * 111.00032 * 189.64147 * 9 8 7 11 11 C 1.50692 * 109.47560 * 170.03174 * 10 9 8 12 12 H 1.08003 * 119.99775 * 2.16367 * 11 10 9 13 13 C 1.37877 * 120.00681 * 182.15659 * 11 10 9 14 14 N 1.31507 * 120.00652 * 179.97438 * 13 11 10 15 15 Si 1.86811 * 119.99641 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46796 * 89.99952 * 15 13 11 17 17 H 1.48497 * 109.47176 * 209.99806 * 15 13 11 18 18 H 1.48494 * 109.46882 * 329.99875 * 15 13 11 19 19 C 1.46903 * 110.99977 * 65.69501 * 9 8 7 20 20 C 1.52993 * 109.47541 * 80.49035 * 19 9 8 21 21 C 1.53002 * 109.46795 * 77.72501 * 20 19 9 22 22 C 1.53001 * 109.47198 * 197.72035 * 20 19 9 23 23 C 1.52996 * 109.47426 * 317.72593 * 20 19 9 24 24 C 1.33857 * 115.11450 * 359.97438 * 7 6 5 25 25 S 1.70616 * 110.96058 * 0.02562 * 24 7 6 26 26 H 1.08997 * 109.47283 * 299.99356 * 1 2 3 27 27 H 1.09000 * 109.47531 * 59.99607 * 1 2 3 28 28 H 1.09005 * 109.47763 * 179.97438 * 1 2 3 29 29 H 1.07999 * 123.35428 * 359.76715 * 6 5 3 30 30 H 1.08999 * 109.46622 * 203.89371 * 8 7 6 31 31 H 1.09002 * 109.47139 * 323.89344 * 8 7 6 32 32 H 1.09007 * 109.47458 * 290.03962 * 10 9 8 33 33 H 1.09001 * 109.47197 * 50.03148 * 10 9 8 34 34 H 0.97003 * 120.00273 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.47147 * 200.49495 * 19 9 8 36 36 H 1.09006 * 109.47096 * 320.49081 * 19 9 8 37 37 H 1.08992 * 109.47729 * 22.22018 * 21 20 19 38 38 H 1.09003 * 109.47212 * 142.22478 * 21 20 19 39 39 H 1.09005 * 109.47213 * 262.21645 * 21 20 19 40 40 H 1.09001 * 109.46919 * 60.00388 * 22 20 19 41 41 H 1.09006 * 109.47037 * 180.02562 * 22 20 19 42 42 H 1.08994 * 109.47349 * 300.00355 * 22 20 19 43 43 H 1.08996 * 109.47308 * 63.47279 * 23 20 19 44 44 H 1.08995 * 109.47482 * 183.47542 * 23 20 19 45 45 H 1.09000 * 109.46783 * 303.47872 * 23 20 19 46 46 H 1.08004 * 124.51685 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5262 1.2785 -0.0006 6 6 4.2603 2.4324 -0.0001 7 6 5.6169 2.2132 -0.0014 8 6 6.6178 3.3398 -0.0018 9 7 6.8341 3.8031 1.3753 10 6 7.6229 5.0421 1.3962 11 6 7.6178 5.6175 2.7890 12 1 7.1115 5.0951 3.5872 13 6 8.2595 6.8108 3.0443 14 7 8.2547 7.3132 4.2597 15 14 9.1349 7.7147 1.6635 16 1 8.1877 8.6507 1.0062 17 1 10.2800 8.4790 2.2201 18 1 9.6326 6.7330 0.6668 19 6 7.4726 2.7589 2.1879 20 6 8.9775 2.7477 1.9130 21 6 9.6415 3.9045 2.6625 22 6 9.5733 1.4218 2.3906 23 6 9.2229 2.9055 0.4111 24 6 5.9844 0.9260 -0.0023 25 16 4.6199 -0.0983 -0.0023 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0277 -0.0005 29 1 3.8180 3.4176 -0.0030 30 1 7.5611 2.9875 -0.4190 31 1 6.2379 4.1632 -0.6067 32 1 8.6482 4.8253 1.0964 33 1 7.1866 5.7623 0.7040 34 1 8.7059 8.1529 4.4392 35 1 7.2976 2.9628 3.2442 36 1 7.0489 1.7882 1.9302 37 1 9.0071 4.2102 3.4944 38 1 10.6104 3.5820 3.0438 39 1 9.7802 4.7456 1.9832 40 1 9.1003 0.5977 1.8566 41 1 10.6457 1.4140 2.1952 42 1 9.3986 1.3095 3.4606 43 1 8.8535 3.8769 0.0826 44 1 10.2915 2.8356 0.2082 45 1 8.6984 2.1163 -0.1276 46 1 7.0081 0.5819 -0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411287380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:48 Heat of formation + Delta-G solvation = -18.623593 kcal Electronic energy + Delta-G solvation = -26497.868749 eV Core-core repulsion = 22901.982217 eV Total energy + Delta-G solvation = -3595.886532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50410 -41.18429 -38.85094 -37.44219 -35.08715 -34.51712 -31.94872 -30.28677 -29.23854 -28.61479 -27.64738 -27.39583 -25.74708 -25.12339 -22.44524 -21.58341 -20.11830 -19.89974 -19.29516 -18.89674 -18.00031 -17.46703 -17.18157 -16.74232 -16.50046 -16.15711 -15.70102 -15.14295 -14.90831 -14.68335 -14.57590 -14.40165 -14.29816 -13.75173 -13.66379 -13.51651 -13.16573 -13.07797 -13.00400 -12.80543 -12.51702 -12.47017 -12.34545 -12.27840 -12.05709 -11.87775 -11.87055 -11.75363 -11.68315 -11.47770 -11.36687 -11.13683 -10.98779 -10.56385 -9.90190 -9.35595 -8.53993 -8.16947 -6.09020 -0.64618 0.50465 0.91882 1.15396 1.34951 1.36653 1.44513 1.61530 1.86801 2.39426 3.17426 3.53210 3.81193 4.00720 4.01941 4.05796 4.16557 4.20630 4.29397 4.31706 4.40704 4.55172 4.65159 4.69040 4.73034 4.78242 4.80611 4.84412 4.93608 4.96565 5.02988 5.08230 5.14809 5.18509 5.21771 5.27210 5.37658 5.39675 5.47341 5.53380 5.66131 5.73405 5.98291 6.14729 6.55279 6.56312 6.81520 6.88082 7.45195 9.00160 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003625 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.331585 B = 7723.249422 C = 8734.343763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.541 3.459 4 O -0.536 6.536 5 C -0.302 4.302 6 C -0.027 4.027 7 C -0.115 4.115 8 C 0.071 3.929 9 N -0.538 5.538 10 C 0.136 3.864 11 C -0.472 4.472 12 H 0.032 0.968 13 C 0.011 3.989 14 N -0.953 5.953 15 Si 0.923 3.077 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.240 1.240 19 C 0.082 3.918 20 C -0.093 4.093 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.162 4.162 24 C -0.213 4.213 25 S 0.305 5.695 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 -21.097 -13.133 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.387 3.613 4 O -0.429 6.429 5 C -0.420 4.420 6 C -0.062 4.062 7 C -0.127 4.127 8 C -0.057 4.057 9 N -0.261 5.261 10 C 0.010 3.990 11 C -0.511 4.511 12 H 0.050 0.950 13 C -0.184 4.184 14 N -0.596 5.596 15 Si 0.748 3.252 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.163 1.163 19 C -0.047 4.047 20 C -0.094 4.094 21 C -0.196 4.196 22 C -0.187 4.187 23 C -0.218 4.218 24 C -0.351 4.351 25 S 0.574 5.426 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.490 -22.196 -12.845 26.226 hybrid contribution 0.852 3.081 -0.026 3.197 sum -4.638 -19.114 -12.871 23.506 Atomic orbital electron populations 1.23625 0.73844 1.06150 1.02683 1.86557 1.25615 1.30918 1.84235 1.19887 0.87594 0.81792 0.72001 1.90880 1.66865 1.37108 1.48011 1.23503 0.94014 1.00314 1.24160 1.20665 0.93116 0.98144 0.94242 1.18561 0.93415 0.95243 1.05509 1.21662 0.98124 0.94987 0.90949 1.61981 1.49589 1.04314 1.10235 1.20900 0.94484 0.88111 0.95477 1.20989 1.30682 1.04961 0.94448 0.94958 1.25550 0.97689 0.98106 0.97103 1.70037 1.46487 1.20954 1.22100 0.86085 0.78619 0.79674 0.80776 1.20325 1.21529 1.16329 1.22123 0.91317 0.94313 0.96899 1.21099 0.96432 0.96092 0.95806 1.22466 0.98778 0.97112 1.01272 1.21807 1.00640 0.95391 1.00814 1.22668 1.02005 1.02146 0.95015 1.25753 1.06626 0.97120 1.05622 1.82707 0.90684 1.04133 1.65026 0.92116 0.91696 0.84181 0.84908 0.88604 0.91503 0.93047 0.97422 0.93037 0.94541 0.90062 0.92467 0.94878 0.93455 0.90873 0.92245 0.93560 0.92155 0.92108 0.89858 0.78550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.64 16 2 O -0.36 -7.82 10.42 -58.09 -0.61 -8.43 16 3 C 0.54 15.23 7.92 69.94 0.55 15.78 16 4 O -0.54 -18.49 16.64 19.41 0.32 -18.16 16 5 C -0.30 -7.93 6.45 24.04 0.16 -7.77 16 6 C -0.03 -0.78 9.80 21.73 0.21 -0.57 16 7 C -0.11 -2.99 4.66 -21.05 -0.10 -3.09 16 8 C 0.07 2.12 4.65 85.56 0.40 2.52 16 9 N -0.54 -20.65 4.70 -905.37 -4.25 -24.91 16 10 C 0.14 6.08 2.74 85.56 0.23 6.32 16 11 C -0.47 -25.98 5.80 25.60 0.15 -25.84 16 12 H 0.03 2.04 7.26 -2.91 -0.02 2.02 16 13 C 0.01 0.65 5.29 84.66 0.45 1.09 16 14 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 15 Si 0.92 43.39 26.53 68.60 1.82 45.21 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.24 -10.10 6.59 99.48 0.66 -9.45 16 19 C 0.08 2.82 4.58 86.30 0.40 3.22 16 20 C -0.09 -2.84 0.77 -52.18 -0.04 -2.88 16 21 C -0.14 -5.51 7.23 71.98 0.52 -4.99 16 22 C -0.13 -3.06 8.17 71.98 0.59 -2.47 16 23 C -0.16 -4.22 6.33 71.98 0.46 -3.76 16 24 C -0.21 -4.08 9.03 66.82 0.60 -3.48 16 25 S 0.30 5.43 22.92 -56.49 -1.29 4.13 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.14 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.10 2.40 3.17 -2.39 -0.01 2.39 16 31 H 0.07 2.07 7.94 -2.39 -0.02 2.05 16 32 H 0.05 2.18 1.38 -2.38 0.00 2.18 16 33 H 0.01 0.36 7.25 -2.39 -0.02 0.34 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.04 1.54 6.88 -2.39 -0.02 1.52 16 36 H 0.08 2.32 5.45 -2.38 -0.01 2.31 16 37 H 0.06 2.77 5.09 -2.39 -0.01 2.75 16 38 H 0.03 1.17 7.72 -2.39 -0.02 1.15 16 39 H 0.05 2.00 4.22 -2.38 -0.01 1.99 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.30 8.12 -2.38 -0.02 1.28 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.84 3.82 -2.39 -0.01 1.83 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.66 6.09 -2.39 -0.01 1.64 16 46 H 0.20 2.64 7.61 -2.91 -0.02 2.62 16 Total: -1.00 -71.25 357.16 3.02 -68.23 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.96 Total: 17.23 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 5.77 Total: -24.27 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -3.95 Total: -83.93 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.28 Total: -26.59 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.82 Total: 45.21 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.29 Total: 4.13 kcal Total: -71.25 3.02 -68.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411287380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.603 kcal (2) G-P(sol) polarization free energy of solvation -71.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds