Wall clock time and date at job start Tue Mar 31 2020 13:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00450 * 2 1 4 4 C 1.53002 * 109.47820 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46792 * 305.00325 * 4 3 2 6 6 C 1.53008 * 109.46686 * 64.99887 * 4 3 2 7 7 N 1.46494 * 109.47100 * 184.99834 * 4 3 2 8 8 C 1.36494 * 124.77923 * 306.89663 * 7 4 3 9 9 C 1.50701 * 125.41951 * 359.97438 * 8 7 4 10 10 C 1.34358 * 109.16436 * 180.24409 * 8 7 4 11 11 C 1.46897 * 106.35279 * 359.60653 * 10 8 7 12 12 C 1.46456 * 127.06113 * 180.12243 * 11 10 8 13 13 O 1.21348 * 120.00040 * 180.32054 * 12 11 10 14 14 C 1.50706 * 119.99835 * 0.32249 * 12 11 10 15 15 S 1.81404 * 109.46788 * 180.02562 * 14 12 11 16 16 C 1.81404 * 102.99483 * 180.02562 * 15 14 12 17 17 C 1.50704 * 109.46462 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00533 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99538 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99938 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46920 * 89.99760 * 21 19 17 23 23 H 1.48499 * 109.47101 * 209.99547 * 21 19 17 24 24 H 1.48495 * 109.46972 * 330.00035 * 21 19 17 25 25 C 1.34491 * 124.77665 * 126.87526 * 7 4 3 26 26 C 1.50699 * 125.91863 * 359.97438 * 25 7 4 27 27 H 1.09003 * 109.46685 * 60.00527 * 1 2 3 28 28 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47286 * 300.00522 * 1 2 3 30 30 H 1.09005 * 109.47047 * 59.99235 * 3 2 1 31 31 H 1.09005 * 109.47004 * 300.00457 * 3 2 1 32 32 H 1.08997 * 109.46890 * 65.85216 * 6 4 3 33 33 H 1.08995 * 109.46578 * 185.85349 * 6 4 3 34 34 H 1.08996 * 109.46805 * 305.85326 * 6 4 3 35 35 H 1.08995 * 109.46872 * 85.05425 * 9 8 7 36 36 H 1.09000 * 109.46714 * 325.06150 * 9 8 7 37 37 H 1.08994 * 109.47051 * 205.06465 * 9 8 7 38 38 H 1.07994 * 126.82138 * 179.71235 * 10 8 7 39 39 H 1.09002 * 109.46745 * 300.00001 * 14 12 11 40 40 H 1.08991 * 109.46827 * 60.00190 * 14 12 11 41 41 H 1.08994 * 109.47071 * 299.99477 * 16 15 14 42 42 H 1.08996 * 109.47301 * 60.00058 * 16 15 14 43 43 H 0.96999 * 119.99871 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.46888 * 90.00254 * 26 25 7 45 45 H 1.08997 * 109.47280 * 210.00040 * 26 25 7 46 46 H 1.09002 * 109.47054 * 330.00327 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9963 0.5364 -1.3065 7 7 4.1309 2.5178 0.1210 8 6 3.8388 3.5769 -0.6890 9 6 2.8622 3.5556 -1.8365 10 6 4.5649 4.6398 -0.3041 11 6 5.3653 4.1994 0.8462 12 6 6.3158 5.0018 1.6192 13 8 6.9164 4.5029 2.5482 14 6 6.5479 6.4472 1.2610 15 16 7.7712 7.1619 2.3939 16 6 7.9130 8.8747 1.8134 17 6 8.9105 9.6136 2.6679 18 1 9.4088 9.1041 3.4793 19 6 9.1860 10.9406 2.4145 20 7 8.5788 11.5613 1.4267 21 14 10.4218 11.8569 3.4741 22 1 11.7776 11.7197 2.8840 23 1 10.0519 13.2937 3.5358 24 1 10.4184 11.2855 4.8447 25 6 5.0418 2.8705 1.0454 26 6 5.6105 1.9726 2.1138 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.7732 1.2018 -2.1404 33 1 5.0702 0.3553 -1.2633 34 1 3.4736 -0.4098 -1.4467 35 1 1.8564 3.7436 -1.4611 36 1 2.8925 2.5798 -2.3213 37 1 3.1315 4.3277 -2.5571 38 1 4.5597 5.6231 -0.7506 39 1 6.9185 6.5129 0.2381 40 1 5.6105 6.9970 1.3439 41 1 8.2489 8.8802 0.7765 42 1 6.9414 9.3637 1.8832 43 1 8.7729 12.4947 1.2482 44 1 6.5032 1.4759 1.7337 45 1 5.8709 2.5686 2.9885 46 1 4.8687 1.2239 2.3919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:47 Heat of formation + Delta-G solvation = -45.307117 kcal Electronic energy + Delta-G solvation = -24785.106882 eV Core-core repulsion = 21188.063266 eV Total energy + Delta-G solvation = -3597.043616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82515 -38.79565 -38.25744 -34.85032 -33.06586 -33.02152 -30.76943 -29.65514 -28.70511 -28.34075 -28.01217 -26.14257 -24.94610 -23.14368 -22.69523 -21.83183 -19.13905 -18.53114 -17.07630 -16.64246 -16.55595 -16.35495 -15.84221 -15.53647 -15.28233 -15.00342 -14.51269 -14.40924 -14.14429 -13.89893 -13.82863 -13.52391 -13.46533 -13.15962 -12.82818 -12.61543 -12.44989 -12.42696 -12.35801 -12.26248 -12.13787 -12.09234 -11.74212 -11.65488 -11.50868 -11.14767 -10.81757 -10.64737 -10.27509 -9.91738 -9.57015 -9.27675 -8.74768 -8.66213 -8.54259 -8.08740 -6.52591 -6.12404 -4.15477 1.49703 2.15688 2.27285 2.66775 3.30335 3.31886 3.36970 3.40046 3.43580 3.97056 4.03823 4.27787 4.38782 4.42491 4.49711 4.59516 4.67396 4.72117 4.77540 4.81227 4.91416 4.95115 5.06636 5.11691 5.16957 5.23303 5.24792 5.27681 5.44339 5.51504 5.54676 5.62323 5.66380 5.77015 5.83857 5.90204 5.91160 6.24780 6.44504 6.71368 6.97291 7.06504 7.18514 7.19662 7.83132 8.02444 8.10422 8.86678 9.46899 10.99181 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.002110 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.353340 B =13265.981761 C =13733.936132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.047 3.953 4 C 0.127 3.873 5 H 0.109 0.891 6 C -0.164 4.164 7 N -0.430 5.430 8 C 0.001 3.999 9 C -0.091 4.091 10 C -0.144 4.144 11 C -0.251 4.251 12 C 0.441 3.559 13 O -0.450 6.450 14 C -0.142 4.142 15 S -0.261 6.261 16 C 0.078 3.922 17 C -0.508 4.508 18 H 0.067 0.933 19 C 0.064 3.936 20 N -0.894 5.894 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.108 3.892 26 C -0.096 4.096 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.206 -24.197 -8.545 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.031 4.031 4 C 0.025 3.975 5 H 0.127 0.873 6 C -0.222 4.222 7 N -0.109 5.109 8 C -0.106 4.106 9 C -0.148 4.148 10 C -0.168 4.168 11 C -0.260 4.260 12 C 0.319 3.681 13 O -0.325 6.325 14 C -0.290 4.290 15 S -0.034 6.034 16 C -0.069 4.069 17 C -0.547 4.547 18 H 0.086 0.914 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.008 4.008 26 C -0.153 4.153 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.167 0.833 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.446 -25.253 -7.372 31.566 hybrid contribution -0.411 1.608 -0.773 1.831 sum -17.856 -23.645 -8.146 30.729 Atomic orbital electron populations 1.22792 0.80075 1.03163 1.00374 1.87802 1.20386 1.26776 1.95550 1.22931 0.92433 0.85579 1.02108 1.21234 0.92233 0.82277 1.01757 0.87302 1.22246 1.02465 1.01760 0.95703 1.43529 1.32949 1.09288 1.25107 1.20080 1.04599 0.87559 0.98330 1.20588 0.96568 1.03252 0.94398 1.21897 0.98751 0.98290 0.97820 1.20944 1.07688 0.93716 1.03619 1.20782 0.78293 0.87759 0.81268 1.90507 1.42845 1.73121 1.26072 1.23697 1.03624 0.97495 1.04207 1.87066 1.53658 1.16564 1.46120 1.21109 1.00524 0.86089 0.99154 1.20683 1.23337 0.95159 1.15546 0.91441 1.24967 0.96455 0.97033 0.95520 1.69959 1.42367 1.11417 1.29556 0.86350 0.80995 0.78583 0.80736 1.20384 1.21053 1.19531 1.20825 0.92745 0.94568 0.92632 1.20611 1.00129 0.97979 0.96630 0.93761 0.89146 0.93757 0.92408 0.91437 0.91216 0.91518 0.89802 0.91341 0.91279 0.89839 0.83345 0.87988 0.88012 0.94705 0.94703 0.92621 0.90214 0.87957 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.74 10.14 -35.23 -0.36 -3.09 16 3 C 0.05 0.32 5.09 37.16 0.19 0.51 16 4 C 0.13 0.97 3.01 -67.93 -0.20 0.76 16 5 H 0.11 0.79 6.44 -51.93 -0.33 0.46 16 6 C -0.16 -1.07 9.25 37.16 0.34 -0.72 16 7 N -0.43 -4.33 2.56 -100.61 -0.26 -4.59 16 8 C 0.00 0.01 6.33 -81.89 -0.52 -0.51 16 9 C -0.09 -0.60 8.35 36.01 0.30 -0.30 16 10 C -0.14 -1.76 10.58 -37.45 -0.40 -2.16 16 11 C -0.25 -3.65 6.29 -103.09 -0.65 -4.30 16 12 C 0.44 7.78 7.14 -31.00 -0.22 7.56 16 13 O -0.45 -9.03 14.40 5.50 0.08 -8.95 16 14 C -0.14 -2.61 5.98 36.01 0.22 -2.40 16 15 S -0.26 -6.22 20.79 -107.50 -2.24 -8.45 16 16 C 0.08 2.11 5.70 36.01 0.21 2.32 16 17 C -0.51 -14.86 9.13 -34.44 -0.31 -15.17 16 18 H 0.07 1.99 7.71 -52.49 -0.40 1.58 16 19 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 21 Si 0.91 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.11 1.35 6.94 -81.44 -0.56 0.79 16 26 C -0.10 -1.04 9.42 36.01 0.34 -0.70 16 27 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.40 5.06 -51.93 -0.26 0.13 16 32 H 0.07 0.44 5.32 -51.93 -0.28 0.16 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.48 7.67 -51.93 -0.40 0.09 16 35 H 0.07 0.39 7.52 -51.93 -0.39 0.00 16 36 H 0.07 0.39 4.75 -51.93 -0.25 0.14 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 1.32 6.52 -51.93 -0.34 0.98 16 46 H 0.06 0.52 6.87 -51.93 -0.36 0.16 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -33.91 385.48 -8.72 -42.63 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.22 Total: -3.18 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.26 Total: -11.33 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.48 Total: -30.38 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.28 Total: -12.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -6.22 SS G_CDS: -2.24 Total: -8.45 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.91 -8.72 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.676 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds