Wall clock time and date at job start Tue Mar 31 2020 13:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00450 * 2 1 4 4 C 1.53002 * 109.47820 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46792 * 305.00325 * 4 3 2 6 6 C 1.53008 * 109.46686 * 64.99887 * 4 3 2 7 7 N 1.46494 * 109.47100 * 184.99834 * 4 3 2 8 8 C 1.36494 * 124.77923 * 306.89663 * 7 4 3 9 9 C 1.50701 * 125.41951 * 359.97438 * 8 7 4 10 10 C 1.34358 * 109.16436 * 180.24409 * 8 7 4 11 11 C 1.46897 * 106.35279 * 359.60653 * 10 8 7 12 12 C 1.46456 * 127.06113 * 180.12243 * 11 10 8 13 13 O 1.21348 * 120.00040 * 180.32054 * 12 11 10 14 14 C 1.50706 * 119.99835 * 0.32249 * 12 11 10 15 15 S 1.81404 * 109.46788 * 180.02562 * 14 12 11 16 16 C 1.81404 * 102.99483 * 180.02562 * 15 14 12 17 17 C 1.50704 * 109.46462 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00533 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99538 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99938 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46920 * 89.99760 * 21 19 17 23 23 H 1.48499 * 109.47101 * 209.99547 * 21 19 17 24 24 H 1.48495 * 109.46972 * 330.00035 * 21 19 17 25 25 C 1.34491 * 124.77665 * 126.87526 * 7 4 3 26 26 C 1.50699 * 125.91863 * 359.97438 * 25 7 4 27 27 H 1.09003 * 109.46685 * 60.00527 * 1 2 3 28 28 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47286 * 300.00522 * 1 2 3 30 30 H 1.09005 * 109.47047 * 59.99235 * 3 2 1 31 31 H 1.09005 * 109.47004 * 300.00457 * 3 2 1 32 32 H 1.08997 * 109.46890 * 65.85216 * 6 4 3 33 33 H 1.08995 * 109.46578 * 185.85349 * 6 4 3 34 34 H 1.08996 * 109.46805 * 305.85326 * 6 4 3 35 35 H 1.08995 * 109.46872 * 85.05425 * 9 8 7 36 36 H 1.09000 * 109.46714 * 325.06150 * 9 8 7 37 37 H 1.08994 * 109.47051 * 205.06465 * 9 8 7 38 38 H 1.07994 * 126.82138 * 179.71235 * 10 8 7 39 39 H 1.09002 * 109.46745 * 300.00001 * 14 12 11 40 40 H 1.08991 * 109.46827 * 60.00190 * 14 12 11 41 41 H 1.08994 * 109.47071 * 299.99477 * 16 15 14 42 42 H 1.08996 * 109.47301 * 60.00058 * 16 15 14 43 43 H 0.96999 * 119.99871 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.46888 * 90.00254 * 26 25 7 45 45 H 1.08997 * 109.47280 * 210.00040 * 26 25 7 46 46 H 1.09002 * 109.47054 * 330.00327 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9963 0.5364 -1.3065 7 7 4.1309 2.5178 0.1210 8 6 3.8388 3.5769 -0.6890 9 6 2.8622 3.5556 -1.8365 10 6 4.5649 4.6398 -0.3041 11 6 5.3653 4.1994 0.8462 12 6 6.3158 5.0018 1.6192 13 8 6.9164 4.5029 2.5482 14 6 6.5479 6.4472 1.2610 15 16 7.7712 7.1619 2.3939 16 6 7.9130 8.8747 1.8134 17 6 8.9105 9.6136 2.6679 18 1 9.4088 9.1041 3.4793 19 6 9.1860 10.9406 2.4145 20 7 8.5788 11.5613 1.4267 21 14 10.4218 11.8569 3.4741 22 1 11.7776 11.7197 2.8840 23 1 10.0519 13.2937 3.5358 24 1 10.4184 11.2855 4.8447 25 6 5.0418 2.8705 1.0454 26 6 5.6105 1.9726 2.1138 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.7732 1.2018 -2.1404 33 1 5.0702 0.3553 -1.2633 34 1 3.4736 -0.4098 -1.4467 35 1 1.8564 3.7436 -1.4611 36 1 2.8925 2.5798 -2.3213 37 1 3.1315 4.3277 -2.5571 38 1 4.5597 5.6231 -0.7506 39 1 6.9185 6.5129 0.2381 40 1 5.6105 6.9970 1.3439 41 1 8.2489 8.8802 0.7765 42 1 6.9414 9.3637 1.8832 43 1 8.7729 12.4947 1.2482 44 1 6.5032 1.4759 1.7337 45 1 5.8709 2.5686 2.9885 46 1 4.8687 1.2239 2.3919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413011975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:47 Heat of formation + Delta-G solvation = -64.400579 kcal Electronic energy + Delta-G solvation = -24785.934837 eV Core-core repulsion = 21188.063266 eV Total energy + Delta-G solvation = -3597.871571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.68762 -39.93782 -38.98711 -35.54093 -35.28351 -33.81497 -32.01149 -30.65682 -30.44966 -29.60088 -28.44330 -26.63433 -25.85956 -25.20072 -23.62112 -22.73556 -20.15720 -19.47265 -18.62818 -17.72743 -17.38732 -17.18794 -17.08950 -16.71463 -16.37126 -16.16625 -16.08100 -15.63202 -15.36061 -14.67591 -14.48989 -14.46699 -14.37985 -14.24512 -14.12788 -14.08960 -13.87234 -13.55749 -13.38281 -13.32471 -12.99621 -12.84983 -12.72688 -12.59226 -12.52285 -12.46677 -12.14559 -12.01381 -11.71532 -11.60008 -10.74286 -10.73944 -10.70331 -10.63466 -9.68355 -9.00077 -8.48430 -8.32860 -6.45513 0.33005 0.86894 1.28705 1.40160 1.41873 1.54058 1.55797 2.02393 2.20789 2.37765 2.79316 3.01364 3.20131 3.49644 3.67346 3.77916 3.85230 3.93615 4.09371 4.17725 4.28047 4.34075 4.37469 4.38340 4.50561 4.53009 4.53445 4.59079 4.66889 4.69538 4.76444 4.78491 4.85505 4.91174 4.94598 4.95672 5.03360 5.06568 5.26408 5.29443 5.57901 5.76721 5.89996 6.01527 6.07072 6.26088 6.61040 6.68688 7.21815 8.79348 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.002110 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.353340 B =13265.981761 C =13733.936132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.122 3.878 5 H 0.112 0.888 6 C -0.159 4.159 7 N -0.422 5.422 8 C 0.014 3.986 9 C -0.091 4.091 10 C -0.165 4.165 11 C -0.284 4.284 12 C 0.443 3.557 13 O -0.486 6.486 14 C -0.127 4.127 15 S -0.292 6.292 16 C 0.088 3.912 17 C -0.538 4.538 18 H 0.058 0.942 19 C 0.015 3.985 20 N -0.923 5.923 21 Si 0.978 3.022 22 H -0.268 1.268 23 H -0.272 1.272 24 H -0.268 1.268 25 C 0.110 3.890 26 C -0.094 4.094 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 -25.487 -9.680 33.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.025 4.025 4 C 0.021 3.979 5 H 0.130 0.870 6 C -0.216 4.216 7 N -0.099 5.099 8 C -0.093 4.093 9 C -0.148 4.148 10 C -0.188 4.188 11 C -0.294 4.294 12 C 0.324 3.676 13 O -0.365 6.365 14 C -0.275 4.275 15 S -0.065 6.065 16 C -0.059 4.059 17 C -0.576 4.576 18 H 0.077 0.923 19 C -0.186 4.186 20 N -0.562 5.562 21 Si 0.801 3.199 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.193 1.193 25 C -0.008 4.008 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.174 0.826 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.934 -26.551 -8.533 33.709 hybrid contribution -0.108 1.857 -0.509 1.929 sum -19.043 -24.694 -9.042 32.468 Atomic orbital electron populations 1.22972 0.78793 1.04226 1.01021 1.87778 1.21786 1.26726 1.95653 1.22848 0.91587 0.85757 1.02353 1.21468 0.92952 0.80843 1.02686 0.86987 1.22216 1.02200 1.02212 0.95022 1.43727 1.31849 1.10315 1.24030 1.20602 1.03766 0.86647 0.98279 1.20737 0.96232 1.04596 0.93248 1.22068 0.99424 0.99576 0.97690 1.20744 1.08757 0.94738 1.05112 1.20918 0.78456 0.87203 0.81055 1.90494 1.44701 1.73498 1.27814 1.23804 1.02228 0.98259 1.03246 1.87034 1.56367 1.14714 1.48355 1.20794 0.99105 0.88035 0.97980 1.20970 1.24415 0.96214 1.16045 0.92340 1.25908 0.98241 0.97697 0.96733 1.70049 1.43392 1.12034 1.30700 0.85259 0.78482 0.77440 0.78753 1.19334 1.19713 1.19253 1.20979 0.92731 0.94097 0.93009 1.20598 1.01182 0.97992 0.95365 0.92601 0.87985 0.93620 0.93203 0.90166 0.90670 0.92070 0.88759 0.89759 0.89745 0.88835 0.82573 0.86497 0.86516 0.96364 0.96364 0.92005 0.89585 0.90299 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -4.61 10.14 -148.98 -1.51 -6.12 16 3 C 0.05 0.56 5.09 71.98 0.37 0.93 16 4 C 0.12 1.54 3.01 45.00 0.14 1.68 16 5 H 0.11 1.37 6.44 -2.39 -0.02 1.35 16 6 C -0.16 -1.62 9.25 71.98 0.67 -0.95 16 7 N -0.42 -7.68 2.56 -472.21 -1.21 -8.89 16 8 C 0.01 0.25 6.33 40.95 0.26 0.51 16 9 C -0.09 -0.90 8.35 71.24 0.60 -0.31 16 10 C -0.16 -3.84 10.58 23.65 0.25 -3.59 16 11 C -0.28 -8.25 6.29 -18.87 -0.12 -8.37 16 12 C 0.44 16.01 7.14 27.83 0.20 16.21 16 13 O -0.49 -20.29 14.40 -3.24 -0.05 -20.33 16 14 C -0.13 -4.78 5.98 71.24 0.43 -4.35 16 15 S -0.29 -14.39 20.79 -56.49 -1.17 -15.57 16 16 C 0.09 4.95 5.70 71.24 0.41 5.36 16 17 C -0.54 -32.30 9.13 25.60 0.23 -32.07 16 18 H 0.06 3.54 7.71 -2.91 -0.02 3.52 16 19 C 0.02 0.87 5.46 84.66 0.46 1.34 16 20 N -0.92 -55.29 13.29 21.45 0.28 -55.01 16 21 Si 0.98 45.17 29.54 68.60 2.03 47.20 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.11 2.67 6.94 42.15 0.29 2.96 16 26 C -0.09 -2.00 9.42 71.24 0.67 -1.33 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 0.66 5.06 -2.38 -0.01 0.64 16 32 H 0.07 0.69 5.32 -2.39 -0.01 0.67 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.81 7.67 -2.39 -0.02 0.79 16 35 H 0.08 0.63 7.52 -2.39 -0.02 0.62 16 36 H 0.08 0.61 4.75 -2.39 -0.01 0.60 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.12 4.03 8.14 -2.39 -0.02 4.02 16 40 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.08 2.09 6.52 -2.39 -0.02 2.08 16 46 H 0.09 1.36 6.87 -2.39 -0.02 1.34 16 Total: -1.00 -74.84 385.48 5.43 -69.41 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.97 Total: 9.89 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 6.09 Total: -20.57 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.92 Total: -63.90 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.56 Total: -26.46 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -14.39 SS G_CDS: -1.17 Total: -15.57 kcal Total: -74.84 5.43 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.010 kcal (2) G-P(sol) polarization free energy of solvation -74.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds