Wall clock time and date at job start Tue Mar 31 2020 13:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00247 * 2 1 4 4 C 1.53003 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46803 * 54.58647 * 4 3 2 6 6 C 1.52996 * 109.47124 * 294.58569 * 4 3 2 7 7 N 1.46507 * 109.46940 * 174.58235 * 4 3 2 8 8 C 1.36491 * 124.77227 * 66.17027 * 7 4 3 9 9 C 1.50705 * 125.42029 * 359.97438 * 8 7 4 10 10 C 1.34355 * 109.15970 * 179.68327 * 8 7 4 11 11 C 1.46899 * 106.35862 * 0.43865 * 10 8 7 12 12 C 1.46449 * 127.06506 * 179.82289 * 11 10 8 13 13 O 1.21348 * 120.00020 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.99830 * 359.69434 * 12 11 10 15 15 S 1.81404 * 109.46936 * 179.97438 * 14 12 11 16 16 C 1.81403 * 102.99734 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46833 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99735 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00452 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46834 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47098 * 120.00407 * 21 19 17 24 24 H 1.48496 * 109.47223 * 240.00901 * 21 19 17 25 25 C 1.34477 * 124.77682 * 246.14050 * 7 4 3 26 26 C 1.50699 * 125.92403 * 0.02562 * 25 7 4 27 27 H 1.09007 * 109.47089 * 300.00464 * 1 2 3 28 28 H 1.08998 * 109.46748 * 60.00033 * 1 2 3 29 29 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47428 * 59.99839 * 3 2 1 31 31 H 1.09007 * 109.47035 * 299.99634 * 3 2 1 32 32 H 1.09002 * 109.47344 * 299.99747 * 6 4 3 33 33 H 1.09001 * 109.47071 * 60.00103 * 6 4 3 34 34 H 1.08997 * 109.46946 * 180.02562 * 6 4 3 35 35 H 1.08997 * 109.47246 * 93.57142 * 9 8 7 36 36 H 1.09004 * 109.46734 * 213.57552 * 9 8 7 37 37 H 1.08999 * 109.46888 * 333.56883 * 9 8 7 38 38 H 1.08003 * 126.81902 * 180.28675 * 10 8 7 39 39 H 1.09001 * 109.47109 * 299.99333 * 14 12 11 40 40 H 1.08995 * 109.47950 * 59.99304 * 14 12 11 41 41 H 1.09004 * 109.47202 * 299.99536 * 16 15 14 42 42 H 1.08996 * 109.47309 * 60.00172 * 16 15 14 43 43 H 0.96993 * 120.00298 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.46948 * 269.99409 * 26 25 7 45 45 H 1.08997 * 109.47532 * 29.99117 * 26 25 7 46 46 H 1.09004 * 109.47545 * 149.99733 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8510 0.5620 -0.8367 6 6 3.9960 0.5462 1.3126 7 7 4.1310 2.5167 -0.1298 8 6 4.0408 3.5049 0.8075 9 6 3.3185 3.3951 2.1256 10 6 4.7037 4.5888 0.3707 11 6 5.2392 4.2410 -0.9523 12 6 6.0338 5.0970 -1.8358 13 8 6.4127 4.6758 -2.9089 14 6 6.3755 6.5031 -1.4150 15 16 7.3609 7.3000 -2.7129 16 6 7.6675 8.9543 -2.0346 17 6 8.4897 9.7537 -3.0126 18 1 8.7966 9.3109 -3.9486 19 6 8.8491 11.0505 -2.7126 20 7 8.4750 11.5898 -1.5730 21 14 9.8687 12.0412 -3.9244 22 1 10.1582 11.2119 -5.1218 23 1 9.1133 13.2527 -4.3327 24 1 11.1449 12.4465 -3.2823 25 6 4.8439 2.9379 -1.1894 26 6 5.1574 2.1293 -2.4219 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8901 32 1 3.6805 1.1687 2.1500 33 1 3.5529 -0.4450 1.4096 34 1 5.0826 0.4605 1.3133 35 1 4.0209 3.0874 2.9003 36 1 2.8903 4.3629 2.3869 37 1 2.5219 2.6558 2.0429 38 1 4.8180 5.5298 0.8883 39 1 5.4570 7.0684 -1.2570 40 1 6.9493 6.4760 -0.4887 41 1 6.7165 9.4582 -1.8618 42 1 8.2086 8.8662 -1.0925 43 1 8.7281 12.5020 -1.3618 44 1 6.0946 1.5924 -2.2754 45 1 4.3540 1.4152 -2.6022 46 1 5.2506 2.7956 -3.2796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:51 Heat of formation + Delta-G solvation = -44.968241 kcal Electronic energy + Delta-G solvation = -24786.257711 eV Core-core repulsion = 21189.228789 eV Total energy + Delta-G solvation = -3597.028921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82509 -38.79350 -38.26339 -34.86117 -33.06732 -33.02384 -30.76149 -29.66465 -28.69171 -28.34285 -27.97849 -26.14433 -24.95212 -23.14882 -22.70132 -21.83212 -19.12243 -18.53927 -17.11510 -16.70536 -16.52177 -16.36363 -15.89810 -15.44681 -15.25208 -15.02457 -14.45449 -14.40422 -14.22467 -13.85572 -13.76542 -13.50609 -13.43723 -13.19870 -12.80203 -12.60777 -12.48467 -12.43130 -12.36801 -12.28173 -12.12800 -12.08187 -11.75753 -11.66709 -11.50979 -11.14386 -10.83930 -10.62817 -10.26795 -9.92179 -9.55463 -9.27509 -8.75045 -8.66161 -8.55033 -8.08203 -6.52701 -6.12678 -4.15714 1.49131 2.15301 2.28548 2.66703 3.30338 3.31754 3.37149 3.40250 3.44862 3.96888 4.02113 4.27406 4.39080 4.42409 4.47755 4.59939 4.61119 4.71723 4.77705 4.79833 4.94109 5.01286 5.11259 5.13268 5.20882 5.23829 5.24572 5.27111 5.44203 5.52127 5.53714 5.64177 5.66299 5.73677 5.82740 5.90129 5.91043 6.24942 6.44455 6.71455 6.97583 7.06718 7.18327 7.19574 7.83145 8.02324 8.10210 8.86813 9.46789 10.98959 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.002116 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.016394 B =13228.364039 C =13661.021599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.048 3.952 4 C 0.128 3.872 5 H 0.109 0.891 6 C -0.166 4.166 7 N -0.430 5.430 8 C 0.003 3.997 9 C -0.090 4.090 10 C -0.145 4.145 11 C -0.250 4.250 12 C 0.441 3.559 13 O -0.450 6.450 14 C -0.142 4.142 15 S -0.261 6.261 16 C 0.078 3.922 17 C -0.507 4.507 18 H 0.068 0.932 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.107 3.893 26 C -0.097 4.097 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.149 0.851 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.931 -24.632 9.587 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.029 4.029 4 C 0.025 3.975 5 H 0.127 0.873 6 C -0.223 4.223 7 N -0.109 5.109 8 C -0.104 4.104 9 C -0.147 4.147 10 C -0.169 4.169 11 C -0.259 4.259 12 C 0.319 3.681 13 O -0.325 6.325 14 C -0.290 4.290 15 S -0.034 6.034 16 C -0.069 4.069 17 C -0.546 4.546 18 H 0.086 0.914 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.009 4.009 26 C -0.154 4.154 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.167 0.833 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.447 -25.594 8.232 31.517 hybrid contribution -0.205 1.539 0.910 1.799 sum -16.652 -24.055 9.142 30.651 Atomic orbital electron populations 1.22796 0.80081 1.03166 1.00386 1.87808 1.20390 1.26743 1.95536 1.22940 0.92621 0.85533 1.01842 1.21237 0.92022 0.82295 1.01926 0.87291 1.22266 1.02414 1.01982 0.95660 1.43550 1.41279 1.11188 1.14881 1.20085 1.07179 0.89161 0.93937 1.20589 0.99090 1.03303 0.91705 1.21887 1.01590 0.98382 0.95015 1.20949 1.11569 0.94743 0.98648 1.20779 0.75825 0.86957 0.84541 1.90507 1.45141 1.74748 1.22151 1.23696 1.04051 0.97636 1.03646 1.87066 1.68507 1.18504 1.29320 1.21117 0.99906 0.87061 0.98836 1.20725 1.33073 0.97114 1.03737 0.91380 1.24968 0.96085 0.97230 0.95718 1.69968 1.45856 1.14872 1.22611 0.86299 0.79645 0.79720 0.81030 1.19376 1.20802 1.20788 1.20835 0.95881 0.94182 0.90005 1.20609 1.01522 0.99371 0.93874 0.93778 0.93738 0.89130 0.91773 0.92369 0.90919 0.89868 0.91507 0.90825 0.90097 0.91587 0.83343 0.88001 0.87993 0.94703 0.94691 0.92671 0.90224 0.91903 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.76 10.26 -35.23 -0.36 -3.12 16 3 C 0.05 0.33 5.33 37.16 0.20 0.53 16 4 C 0.13 0.97 2.97 -67.93 -0.20 0.76 16 5 H 0.11 0.79 6.57 -51.93 -0.34 0.45 16 6 C -0.17 -1.05 8.96 37.16 0.33 -0.72 16 7 N -0.43 -4.33 2.56 -100.60 -0.26 -4.59 16 8 C 0.00 0.03 6.36 -81.89 -0.52 -0.49 16 9 C -0.09 -0.60 8.46 36.01 0.30 -0.29 16 10 C -0.15 -1.77 10.58 -37.45 -0.40 -2.17 16 11 C -0.25 -3.64 6.29 -103.09 -0.65 -4.29 16 12 C 0.44 7.78 7.14 -31.01 -0.22 7.56 16 13 O -0.45 -9.03 14.40 5.50 0.08 -8.95 16 14 C -0.14 -2.61 5.98 36.00 0.22 -2.40 16 15 S -0.26 -6.21 20.79 -107.50 -2.24 -8.45 16 16 C 0.08 2.10 5.70 36.01 0.21 2.31 16 17 C -0.51 -14.83 9.13 -34.44 -0.31 -15.15 16 18 H 0.07 2.01 7.71 -52.49 -0.40 1.60 16 19 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 21 Si 0.91 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 1.34 6.94 -81.44 -0.56 0.77 16 26 C -0.10 -1.05 9.31 36.01 0.34 -0.71 16 27 H 0.04 0.17 8.14 -51.92 -0.42 -0.26 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.40 5.46 -51.93 -0.28 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 4.94 -51.93 -0.26 0.17 16 33 H 0.08 0.47 7.84 -51.93 -0.41 0.07 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.36 4.23 -51.93 -0.22 0.14 16 38 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 40 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.03 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.52 7.07 -51.93 -0.37 0.16 16 46 H 0.10 1.32 6.52 -51.93 -0.34 0.98 16 LS Contribution 385.87 15.07 5.82 5.82 Total: -1.00 -33.91 385.87 -8.74 -42.64 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.23 Total: -3.20 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.26 Total: -11.31 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.48 Total: -30.38 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.28 Total: -12.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -6.21 SS G_CDS: -2.24 Total: -8.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.91 -8.74 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.324 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds