Wall clock time and date at job start Tue Mar 31 2020 13:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 3 7 7 C 1.36487 * 124.77820 * 269.69702 * 6 5 4 8 8 C 1.50698 * 125.41781 * 0.02562 * 7 6 5 9 9 C 1.34355 * 109.16411 * 179.81060 * 7 6 5 10 10 C 1.46900 * 106.35229 * 0.43475 * 9 7 6 11 11 C 1.46456 * 127.05709 * 179.75700 * 10 9 7 12 12 O 1.21343 * 119.99662 * 179.97438 * 11 10 9 13 13 C 1.50694 * 120.00263 * 359.96439 * 11 10 9 14 14 S 1.81403 * 109.47314 * 180.02562 * 13 11 10 15 15 C 1.81404 * 103.00158 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46898 * 180.02562 * 15 14 13 17 17 H 1.08008 * 120.00470 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00209 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99459 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00680 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46976 * 89.99566 * 20 18 16 22 22 H 1.48497 * 109.47472 * 210.00253 * 20 18 16 23 23 H 1.48501 * 109.46539 * 330.00205 * 20 18 16 24 24 C 1.34491 * 124.77715 * 89.99798 * 6 5 4 25 25 C 1.50703 * 125.91556 * 359.97438 * 24 6 5 26 26 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 28 28 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 29 29 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 30 30 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 32 32 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 35 35 H 1.09000 * 109.47439 * 89.99437 * 8 7 6 36 36 H 1.08994 * 109.47248 * 209.99488 * 8 7 6 37 37 H 1.08998 * 109.47126 * 329.99502 * 8 7 6 38 38 H 1.07999 * 126.82169 * 180.15918 * 9 7 6 39 39 H 1.08994 * 109.47693 * 300.00609 * 13 11 10 40 40 H 1.09001 * 109.47054 * 60.00895 * 13 11 10 41 41 H 1.08994 * 109.46921 * 300.00244 * 15 14 13 42 42 H 1.09001 * 109.46654 * 60.00342 * 15 14 13 43 43 H 0.97008 * 119.99615 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.47391 * 90.00026 * 25 24 6 45 45 H 1.08999 * 109.46623 * 209.99949 * 25 24 6 46 46 H 1.09000 * 109.47476 * 329.99927 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6183 2.4667 0.0013 7 6 6.3948 2.4106 1.1223 8 6 5.8863 2.4572 2.5402 9 6 7.6842 2.3026 0.7607 10 6 7.7032 2.3019 -0.7081 11 6 8.8796 2.2086 -1.5755 12 8 8.7464 2.2193 -2.7816 13 6 10.2553 2.0994 -0.9703 14 16 11.4922 2.0021 -2.2937 15 6 13.0558 1.8772 -1.3825 16 6 14.2003 1.7876 -2.3588 17 1 14.0065 1.8045 -3.4212 18 6 15.4948 1.6839 -1.8959 19 7 15.7308 1.6627 -0.6022 20 14 16.9136 1.5736 -3.1060 21 1 17.4003 2.9400 -3.4240 22 1 18.0170 0.7826 -2.5043 23 1 16.4512 0.9104 -4.3516 24 6 6.3830 2.4066 -1.1034 25 6 5.8863 2.4460 -2.5257 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8568 0.6438 0.8908 32 1 3.8575 0.6436 -0.8892 33 1 3.8366 3.1235 -0.8887 34 1 3.8359 3.1231 0.8912 35 1 5.6829 1.4440 2.8867 36 1 6.6389 2.9162 3.1812 37 1 4.9693 3.0452 2.5781 38 1 8.5376 2.2347 1.4192 39 1 10.4517 2.9765 -0.3537 40 1 10.3109 1.2021 -0.3540 41 1 13.1821 2.7594 -0.7551 42 1 13.0411 0.9850 -0.7565 43 1 16.6416 1.5894 -0.2765 44 1 5.8473 3.4800 -2.8685 45 1 6.5636 1.8773 -3.1628 46 1 4.8888 2.0091 -2.5744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:44 Heat of formation + Delta-G solvation = -55.363617 kcal Electronic energy + Delta-G solvation = -24213.071944 eV Core-core repulsion = 20615.592245 eV Total energy + Delta-G solvation = -3597.479699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62825 -38.62750 -38.35126 -34.89745 -33.05519 -32.84725 -31.38263 -29.82504 -29.10756 -28.38095 -27.35169 -25.45120 -24.84144 -23.02965 -22.54058 -21.74234 -19.69006 -18.32800 -17.04563 -16.80709 -16.58231 -16.34766 -15.85838 -15.41883 -15.23487 -15.18481 -14.64341 -14.50352 -14.39354 -13.92213 -13.76608 -13.45078 -13.22907 -13.05852 -12.76191 -12.68164 -12.47803 -12.41360 -12.34318 -12.28106 -12.12393 -11.88885 -11.70115 -11.65023 -11.56246 -11.41197 -10.80930 -10.63850 -10.27135 -9.90609 -9.55937 -9.26233 -8.71039 -8.65002 -8.53267 -8.05780 -6.51323 -6.11417 -4.14503 1.51656 2.19349 2.42947 2.69425 3.22325 3.32660 3.37703 3.41581 3.44353 3.98482 4.08894 4.33229 4.42880 4.48585 4.49284 4.53412 4.64899 4.69205 4.73229 4.79771 4.80865 4.86819 4.94517 5.10167 5.14205 5.25803 5.27875 5.32439 5.44571 5.47393 5.57741 5.61176 5.67961 5.70703 5.83838 5.91727 5.92527 6.27156 6.54797 6.74006 6.98790 7.08747 7.19681 7.20859 7.84049 8.04058 8.11480 8.87593 9.47882 11.00160 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.001948 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.361491 B =14368.435141 C =14838.469203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.137 4.137 5 C 0.102 3.898 6 N -0.435 5.435 7 C 0.002 3.998 8 C -0.082 4.082 9 C -0.147 4.147 10 C -0.251 4.251 11 C 0.441 3.559 12 O -0.450 6.450 13 C -0.142 4.142 14 S -0.261 6.261 15 C 0.078 3.922 16 C -0.508 4.508 17 H 0.067 0.933 18 C 0.064 3.936 19 N -0.894 5.894 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 C 0.105 3.895 25 C -0.095 4.095 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.343 1.787 7.249 33.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.176 4.176 5 C -0.020 4.020 6 N -0.112 5.112 7 C -0.105 4.105 8 C -0.140 4.140 9 C -0.170 4.170 10 C -0.260 4.260 11 C 0.319 3.681 12 O -0.326 6.326 13 C -0.290 4.290 14 S -0.034 6.034 15 C -0.069 4.069 16 C -0.547 4.547 17 H 0.086 0.914 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.195 1.195 24 C -0.011 4.011 25 C -0.153 4.153 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.166 0.834 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.663 1.654 5.704 33.199 hybrid contribution 0.817 0.160 1.160 1.428 sum -31.846 1.815 6.864 32.628 Atomic orbital electron populations 1.22774 0.80575 1.03089 1.00079 1.87900 1.20047 1.27535 1.95437 1.22377 0.93106 0.85196 1.00536 1.21882 0.93666 0.96912 1.05093 1.21717 0.77875 0.97653 1.04760 1.43456 1.05856 1.56544 1.05328 1.20146 0.90571 1.11307 0.88431 1.20321 1.01380 1.02456 0.89820 1.21890 0.95353 1.06508 0.93296 1.20951 0.92417 1.18643 0.93968 1.20782 0.88035 0.71464 0.87816 1.90503 1.87995 1.37597 1.16514 1.23697 0.96336 1.05895 1.03107 1.87056 1.03323 1.97439 1.15603 1.21112 0.88694 0.99910 0.97195 1.20684 0.89606 1.51405 0.93047 0.91445 1.24962 0.98656 0.94796 0.95525 1.69966 1.20944 1.49864 1.12524 0.86351 0.81122 0.78228 0.80962 1.20392 1.21052 1.19536 1.20805 0.89833 1.01501 0.88969 1.20592 1.01455 1.03667 0.89548 0.89375 0.93940 0.93897 0.92958 0.92891 0.90035 0.90024 0.88867 0.88786 0.91104 0.89981 0.92083 0.83387 0.87999 0.87997 0.94702 0.94678 0.92630 0.90375 0.88011 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.00 10.70 -35.23 -0.38 -3.38 16 3 C 0.07 0.34 5.94 37.16 0.22 0.56 16 4 C -0.14 -0.86 5.91 -26.73 -0.16 -1.02 16 5 C 0.10 0.60 5.36 -4.04 -0.02 0.58 16 6 N -0.43 -4.25 2.68 -107.63 -0.29 -4.54 16 7 C 0.00 0.02 6.84 -81.89 -0.56 -0.54 16 8 C -0.08 -0.55 10.05 36.00 0.36 -0.19 16 9 C -0.15 -1.83 10.58 -37.45 -0.40 -2.23 16 10 C -0.25 -3.70 6.29 -103.10 -0.65 -4.35 16 11 C 0.44 7.86 7.14 -31.00 -0.22 7.64 16 12 O -0.45 -9.11 14.40 5.50 0.08 -9.03 16 13 C -0.14 -2.64 5.98 36.00 0.22 -2.43 16 14 S -0.26 -6.26 20.79 -107.50 -2.24 -8.49 16 15 C 0.08 2.12 5.70 36.00 0.21 2.32 16 16 C -0.51 -14.92 9.13 -34.44 -0.31 -15.23 16 17 H 0.07 1.99 7.71 -52.48 -0.40 1.59 16 18 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 19 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 20 Si 0.91 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.11 1.30 6.94 -81.44 -0.56 0.74 16 25 C -0.10 -1.01 9.28 36.01 0.33 -0.68 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.44 7.49 -51.93 -0.39 0.05 16 34 H 0.09 0.39 6.87 -51.93 -0.36 0.03 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.31 6.92 -51.93 -0.36 -0.05 16 38 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 40 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 41 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.03 0.98 8.14 -51.92 -0.42 0.55 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.31 6.52 -51.93 -0.34 0.98 16 46 H 0.06 0.50 7.58 -51.93 -0.39 0.10 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -35.00 397.75 -9.36 -44.36 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -7.72 Total: -4.24 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.53 Total: -11.81 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.45 Total: -30.41 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.30 Total: -12.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -2.24 Total: -8.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.00 -9.36 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.004 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds