Wall clock time and date at job start Tue Mar 31 2020 13:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 3 7 7 C 1.36487 * 124.77820 * 269.69702 * 6 5 4 8 8 C 1.50698 * 125.41781 * 0.02562 * 7 6 5 9 9 C 1.34355 * 109.16411 * 179.81060 * 7 6 5 10 10 C 1.46900 * 106.35229 * 0.43475 * 9 7 6 11 11 C 1.46456 * 127.05709 * 179.75700 * 10 9 7 12 12 O 1.21343 * 119.99662 * 179.97438 * 11 10 9 13 13 C 1.50694 * 120.00263 * 359.96439 * 11 10 9 14 14 S 1.81403 * 109.47314 * 180.02562 * 13 11 10 15 15 C 1.81404 * 103.00158 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46898 * 180.02562 * 15 14 13 17 17 H 1.08008 * 120.00470 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00209 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99459 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00680 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46976 * 89.99566 * 20 18 16 22 22 H 1.48497 * 109.47472 * 210.00253 * 20 18 16 23 23 H 1.48501 * 109.46539 * 330.00205 * 20 18 16 24 24 C 1.34491 * 124.77715 * 89.99798 * 6 5 4 25 25 C 1.50703 * 125.91556 * 359.97438 * 24 6 5 26 26 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 28 28 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 29 29 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 30 30 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 32 32 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 35 35 H 1.09000 * 109.47439 * 89.99437 * 8 7 6 36 36 H 1.08994 * 109.47248 * 209.99488 * 8 7 6 37 37 H 1.08998 * 109.47126 * 329.99502 * 8 7 6 38 38 H 1.07999 * 126.82169 * 180.15918 * 9 7 6 39 39 H 1.08994 * 109.47693 * 300.00609 * 13 11 10 40 40 H 1.09001 * 109.47054 * 60.00895 * 13 11 10 41 41 H 1.08994 * 109.46921 * 300.00244 * 15 14 13 42 42 H 1.09001 * 109.46654 * 60.00342 * 15 14 13 43 43 H 0.97008 * 119.99615 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.47391 * 90.00026 * 25 24 6 45 45 H 1.08999 * 109.46623 * 209.99949 * 25 24 6 46 46 H 1.09000 * 109.47476 * 329.99927 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6183 2.4667 0.0013 7 6 6.3948 2.4106 1.1223 8 6 5.8863 2.4572 2.5402 9 6 7.6842 2.3026 0.7607 10 6 7.7032 2.3019 -0.7081 11 6 8.8796 2.2086 -1.5755 12 8 8.7464 2.2193 -2.7816 13 6 10.2553 2.0994 -0.9703 14 16 11.4922 2.0021 -2.2937 15 6 13.0558 1.8772 -1.3825 16 6 14.2003 1.7876 -2.3588 17 1 14.0065 1.8045 -3.4212 18 6 15.4948 1.6839 -1.8959 19 7 15.7308 1.6627 -0.6022 20 14 16.9136 1.5736 -3.1060 21 1 17.4003 2.9400 -3.4240 22 1 18.0170 0.7826 -2.5043 23 1 16.4512 0.9104 -4.3516 24 6 6.3830 2.4066 -1.1034 25 6 5.8863 2.4460 -2.5257 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8568 0.6438 0.8908 32 1 3.8575 0.6436 -0.8892 33 1 3.8366 3.1235 -0.8887 34 1 3.8359 3.1231 0.8912 35 1 5.6829 1.4440 2.8867 36 1 6.6389 2.9162 3.1812 37 1 4.9693 3.0452 2.5781 38 1 8.5376 2.2347 1.4192 39 1 10.4517 2.9765 -0.3537 40 1 10.3109 1.2021 -0.3540 41 1 13.1821 2.7594 -0.7551 42 1 13.0411 0.9850 -0.7565 43 1 16.6416 1.5894 -0.2765 44 1 5.8473 3.4800 -2.8685 45 1 6.5636 1.8773 -3.1628 46 1 4.8888 2.0091 -2.5744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:43 Heat of formation + Delta-G solvation = -75.334681 kcal Electronic energy + Delta-G solvation = -24213.937954 eV Core-core repulsion = 20615.592245 eV Total energy + Delta-G solvation = -3598.345709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.49322 -39.84187 -38.94214 -35.51477 -35.28545 -33.64089 -32.37071 -30.94159 -30.58710 -29.90218 -27.83253 -26.17185 -25.61325 -25.17479 -23.19489 -22.59585 -20.64900 -19.37566 -18.64258 -17.69839 -17.27346 -17.18310 -17.15601 -16.72570 -16.40518 -16.16802 -15.95157 -15.57075 -15.54115 -15.11654 -14.52260 -14.46708 -14.44029 -14.11792 -14.06789 -13.97590 -13.67300 -13.51050 -13.36065 -13.14111 -13.02388 -12.78542 -12.72512 -12.57226 -12.51372 -12.32973 -12.04881 -12.01756 -11.97967 -11.60188 -10.73991 -10.72017 -10.64746 -10.63928 -9.63846 -8.96509 -8.48899 -8.32881 -6.45761 0.34705 0.86756 1.32027 1.40206 1.42035 1.54651 1.75261 2.01894 2.22175 2.37850 2.81569 3.01376 3.21869 3.66323 3.71325 3.87815 4.01715 4.07283 4.14716 4.16731 4.17255 4.32310 4.37424 4.45083 4.47465 4.52214 4.53937 4.59799 4.65082 4.68693 4.81939 4.86465 4.88408 4.93837 4.95075 4.95152 4.97940 5.10343 5.17661 5.31261 5.57689 5.79150 5.89693 6.09618 6.19462 6.31406 6.60761 6.69408 7.21706 8.79365 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.001948 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.361491 B =14368.435141 C =14838.469203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.064 3.936 4 C -0.130 4.130 5 C 0.097 3.903 6 N -0.427 5.427 7 C 0.014 3.986 8 C -0.081 4.081 9 C -0.172 4.172 10 C -0.289 4.289 11 C 0.442 3.558 12 O -0.487 6.487 13 C -0.127 4.127 14 S -0.290 6.290 15 C 0.087 3.913 16 C -0.539 4.539 17 H 0.059 0.941 18 C 0.016 3.984 19 N -0.923 5.923 20 Si 0.978 3.022 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.268 1.268 24 C 0.110 3.890 25 C -0.093 4.093 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.271 0.729 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.661 2.506 8.232 35.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.012 4.012 4 C -0.169 4.169 5 C -0.023 4.023 6 N -0.102 5.102 7 C -0.093 4.093 8 C -0.138 4.138 9 C -0.195 4.195 10 C -0.298 4.298 11 C 0.323 3.677 12 O -0.366 6.366 13 C -0.276 4.276 14 S -0.064 6.064 15 C -0.060 4.060 16 C -0.577 4.577 17 H 0.077 0.923 18 C -0.185 4.185 19 N -0.562 5.562 20 Si 0.801 3.199 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.193 1.193 24 C -0.009 4.009 25 C -0.150 4.150 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -35.006 2.377 6.718 35.724 hybrid contribution 1.335 -0.067 0.960 1.646 sum -33.670 2.310 7.678 34.612 Atomic orbital electron populations 1.22915 0.79237 1.03694 1.01123 1.87850 1.21673 1.29090 1.95696 1.22461 0.91970 0.84657 1.02162 1.21778 0.94757 0.96682 1.03637 1.22066 0.75144 0.97927 1.07175 1.43728 1.07435 1.54705 1.04373 1.20682 0.89961 1.08582 0.90054 1.20456 1.02578 1.03595 0.87215 1.22055 0.96944 1.08242 0.92269 1.20770 0.92217 1.22037 0.94810 1.20921 0.88364 0.70639 0.87761 1.90487 1.88281 1.40040 1.17775 1.23806 0.95216 1.07244 1.01315 1.87013 1.03539 1.97507 1.18310 1.20803 0.90381 0.98146 0.96677 1.20971 0.91068 1.52692 0.92987 0.92318 1.25908 1.01323 0.93741 0.97540 1.70058 1.22041 1.49808 1.14289 0.85251 0.77481 0.78759 0.78387 1.19285 1.19705 1.19262 1.20981 0.89517 1.00093 0.90328 1.20582 1.02251 1.04032 0.88141 0.89162 0.92699 0.92990 0.90986 0.91524 0.91079 0.91976 0.87036 0.85917 0.90182 0.89264 0.89667 0.82973 0.86556 0.86707 0.96348 0.96402 0.92006 0.89434 0.90701 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -5.73 10.70 -148.98 -1.59 -7.32 16 3 C 0.06 0.48 5.94 71.98 0.43 0.91 16 4 C -0.13 -1.31 5.91 30.59 0.18 -1.13 16 5 C 0.10 0.80 5.36 86.38 0.46 1.26 16 6 N -0.43 -7.31 2.68 -494.42 -1.33 -8.64 16 7 C 0.01 0.26 6.84 40.95 0.28 0.54 16 8 C -0.08 -0.81 10.05 71.24 0.72 -0.09 16 9 C -0.17 -4.17 10.58 23.65 0.25 -3.92 16 10 C -0.29 -8.56 6.29 -18.88 -0.12 -8.68 16 11 C 0.44 16.29 7.14 27.83 0.20 16.49 16 12 O -0.49 -20.56 14.40 -3.23 -0.05 -20.60 16 13 C -0.13 -4.90 5.98 71.23 0.43 -4.47 16 14 S -0.29 -14.50 20.79 -56.49 -1.17 -15.68 16 15 C 0.09 4.95 5.70 71.23 0.41 5.36 16 16 C -0.54 -32.56 9.13 25.60 0.23 -32.32 16 17 H 0.06 3.57 7.71 -2.91 -0.02 3.55 16 18 C 0.02 0.92 5.46 84.65 0.46 1.38 16 19 N -0.92 -55.60 13.29 21.45 0.28 -55.32 16 20 Si 0.98 45.36 29.54 68.60 2.03 47.39 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.11 2.61 6.94 42.14 0.29 2.90 16 25 C -0.09 -1.90 9.28 71.24 0.66 -1.24 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.58 7.49 -2.39 -0.02 0.56 16 34 H 0.12 0.38 6.87 -2.39 -0.02 0.37 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.46 6.92 -2.39 -0.02 0.44 16 38 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 40 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 44 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.07 1.99 6.52 -2.39 -0.02 1.98 16 46 H 0.09 1.28 7.58 -2.39 -0.02 1.26 16 Total: -1.00 -78.61 397.75 5.24 -73.36 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.95 Total: 8.39 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 6.13 Total: -21.58 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -1.04 Total: -63.95 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.64 Total: -27.93 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: -14.50 SS G_CDS: -1.17 Total: -15.68 kcal Total: -78.61 5.24 -73.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.973 kcal (2) G-P(sol) polarization free energy of solvation -78.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds