Wall clock time and date at job start Tue Mar 31 2020 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47308 * 2 1 4 4 C 1.38309 * 119.96377 * 270.02444 * 3 2 1 5 5 C 1.38262 * 120.15136 * 180.02562 * 4 3 2 6 6 C 1.38128 * 120.07630 * 359.73923 * 5 4 3 7 7 C 1.38892 * 119.91869 * 0.49234 * 6 5 4 8 8 N 1.39680 * 120.06927 * 179.79251 * 7 6 5 9 9 C 1.46504 * 119.99762 * 154.72192 * 8 7 6 10 10 S 1.65599 * 120.00184 * 334.71723 * 8 7 6 11 11 O 1.42105 * 104.27655 * 333.93077 * 10 8 7 12 12 O 1.42101 * 104.27764 * 206.07514 * 10 8 7 13 13 C 1.81395 * 104.44748 * 90.00382 * 10 8 7 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 8 15 15 C 1.53002 * 109.47371 * 299.99973 * 14 13 10 16 16 C 1.53002 * 109.47538 * 59.99873 * 14 13 10 17 17 C 1.50700 * 109.47535 * 180.02562 * 14 13 10 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 14 13 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47261 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47286 * 119.99607 * 21 19 17 24 24 H 1.48501 * 109.47023 * 239.99779 * 21 19 17 25 25 C 1.38085 * 119.96602 * 89.99565 * 3 2 1 26 26 H 1.08998 * 109.47220 * 299.99932 * 1 2 3 27 27 H 1.09001 * 109.46570 * 60.00220 * 1 2 3 28 28 H 1.09003 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47220 * 240.00068 * 2 1 3 30 30 H 1.09006 * 109.47243 * 119.99958 * 2 1 3 31 31 H 1.07998 * 119.92320 * 359.97061 * 4 3 2 32 32 H 1.08002 * 119.96681 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.03949 * 180.27561 * 6 5 4 34 34 H 1.08994 * 109.47028 * 269.99623 * 9 8 7 35 35 H 1.08993 * 109.47216 * 29.99770 * 9 8 7 36 36 H 1.08996 * 109.46988 * 149.99569 * 9 8 7 37 37 H 1.09003 * 109.47393 * 299.99669 * 13 10 8 38 38 H 1.08994 * 109.47678 * 60.00285 * 13 10 8 39 39 H 1.09003 * 109.46921 * 59.99370 * 15 14 13 40 40 H 1.08991 * 109.47533 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46766 * 300.00134 * 15 14 13 42 42 H 1.09004 * 109.47056 * 59.99837 * 16 14 13 43 43 H 1.08995 * 109.47291 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.46772 * 300.00176 * 16 14 13 45 45 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.03573 * 0.02790 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7236 3.3755 -1.2028 6 6 2.9515 4.0333 -0.0097 7 6 2.7264 3.3805 1.1953 8 7 2.9600 4.0412 2.4036 9 6 2.2450 3.6289 3.6140 10 16 4.0451 5.2905 2.4679 11 8 4.9471 5.0263 1.4021 12 8 4.4889 5.3000 3.8178 13 6 3.0553 6.7685 2.1127 14 6 3.9560 8.0048 2.1429 15 6 4.5930 8.1382 3.5276 16 6 5.0548 7.8613 1.0879 17 6 3.1337 9.2329 1.8484 18 1 2.0745 9.1407 1.6583 19 6 3.7336 10.4740 1.8206 20 7 5.0234 10.5862 2.0516 21 14 2.7143 11.9960 1.4549 22 1 1.2998 11.6027 1.2318 23 1 2.7926 12.9323 2.6049 24 1 3.2402 12.6630 0.2368 25 6 2.2622 2.0710 1.1963 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0816 1.5613 -2.1324 32 1 2.9024 3.8813 -2.1402 33 1 3.3077 5.0529 -0.0140 34 1 1.3151 4.1916 3.6961 35 1 2.0214 2.5636 3.5588 36 1 2.8666 3.8249 4.4877 37 1 2.6019 6.6737 1.1260 38 1 2.2723 6.8706 2.8640 39 1 5.1877 7.2500 3.7410 40 1 5.2343 9.0192 3.5492 41 1 3.8102 8.2406 4.2792 42 1 4.6011 7.7662 0.1013 43 1 5.6968 8.7418 1.1097 44 1 5.6496 6.9731 1.3013 45 1 5.4453 11.4594 2.0324 46 1 2.0826 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416525347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:32 Heat of formation + Delta-G solvation = -48.398725 kcal Electronic energy + Delta-G solvation = -26763.284266 eV Core-core repulsion = 23166.106587 eV Total energy + Delta-G solvation = -3597.177678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77411 -36.81158 -36.43270 -36.30220 -35.39442 -33.80258 -31.71844 -30.00387 -29.47180 -26.89104 -26.24549 -25.77816 -25.27243 -24.04826 -22.00218 -21.40290 -19.47022 -18.58244 -17.41147 -17.15353 -16.05985 -15.94285 -15.70926 -15.10062 -15.04040 -14.73386 -14.39493 -14.06738 -13.84609 -13.62474 -13.22142 -13.12991 -13.02350 -12.57853 -12.50840 -12.35923 -12.26556 -11.93686 -11.75421 -11.60851 -11.40602 -11.21789 -11.11779 -11.05660 -11.00587 -10.81725 -10.67444 -10.46032 -10.34463 -10.25503 -10.10395 -9.71135 -9.53860 -8.76139 -8.74470 -8.44551 -7.95253 -6.07608 -4.19823 0.61827 1.39727 1.45231 2.85088 3.22786 3.31405 3.34093 3.75801 4.23743 4.34629 4.47171 4.55259 4.67122 4.78721 5.05659 5.14982 5.16690 5.17614 5.30293 5.32064 5.39386 5.42361 5.48682 5.61686 5.62587 5.68772 5.70963 5.83815 5.88810 5.97161 6.11091 6.29499 6.36413 6.53611 6.62007 6.64232 6.67653 6.73253 6.84049 6.97410 7.12202 7.25567 7.44280 7.63983 7.92754 8.04394 8.27634 8.78986 9.46004 10.93838 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.003616 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.989660 B = 7741.219049 C = 8265.520771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.059 4.059 4 C -0.149 4.149 5 C -0.078 4.078 6 C -0.159 4.159 7 C 0.185 3.815 8 N -0.952 5.952 9 C 0.071 3.929 10 S 2.580 3.420 11 O -0.946 6.946 12 O -0.953 6.953 13 C -0.578 4.578 14 C 0.083 3.917 15 C -0.165 4.165 16 C -0.165 4.165 17 C -0.502 4.502 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.156 4.156 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.026 0.974 40 H 0.097 0.903 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.097 0.903 44 H 0.028 0.972 45 H 0.262 0.738 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.029 -17.707 -2.592 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.060 4.060 4 C -0.168 4.168 5 C -0.097 4.097 6 C -0.180 4.180 7 C 0.088 3.912 8 N -0.774 5.774 9 C -0.074 4.074 10 S 2.681 3.319 11 O -0.937 6.937 12 O -0.944 6.944 13 C -0.712 4.712 14 C 0.080 3.920 15 C -0.222 4.222 16 C -0.222 4.222 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.177 4.177 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.045 0.955 40 H 0.115 0.885 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.115 0.885 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.948 -17.679 -2.256 19.129 hybrid contribution -1.146 1.201 -0.253 1.679 sum -8.094 -16.477 -2.510 18.529 Atomic orbital electron populations 1.21745 0.94729 1.01513 1.02364 1.20533 0.96140 0.92633 1.02791 1.19658 0.97911 0.95814 0.92641 1.20915 1.03246 0.95339 0.97318 1.20910 0.96909 0.94450 0.97432 1.21169 1.04161 1.01307 0.91379 1.17498 0.97204 0.91903 0.84554 1.55880 1.58923 1.49620 1.13014 1.21804 0.97387 1.02118 0.86064 1.06330 0.75256 0.75584 0.74733 1.93590 1.60191 1.83466 1.56413 1.93540 1.78746 1.86212 1.35881 1.30589 1.13894 1.16203 1.10496 1.17962 0.91240 0.89020 0.93748 1.22290 1.00865 1.02536 0.96539 1.22291 0.99736 1.02047 0.98158 1.20966 0.94585 0.90008 1.48606 0.92166 1.24940 0.95042 0.98926 0.94815 1.69808 1.09391 1.23987 1.48926 0.86464 0.80328 0.82784 0.77994 1.19796 1.20915 1.20893 1.20676 1.05894 0.92964 0.98216 0.92526 0.92456 0.92553 0.90959 0.91142 0.86169 0.85374 0.85060 0.91767 0.90262 0.88913 0.86102 0.86125 0.95477 0.88473 0.94380 0.94362 0.88490 0.95367 0.92732 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.06 -0.67 5.13 -104.65 -0.54 -1.21 16 4 C -0.15 -1.70 9.70 -39.55 -0.38 -2.08 16 5 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 6 C -0.16 -2.48 8.42 -39.38 -0.33 -2.81 16 7 C 0.18 2.80 6.06 -83.79 -0.51 2.29 16 8 N -0.95 -14.74 3.32 -65.40 -0.22 -14.96 16 9 C 0.07 0.84 10.45 59.85 0.63 1.47 16 10 S 2.58 49.49 3.82 -107.50 -0.41 49.08 16 11 O -0.95 -20.14 12.81 -57.54 -0.74 -20.87 16 12 O -0.95 -20.03 14.20 -57.54 -0.82 -20.85 16 13 C -0.58 -11.37 4.98 37.16 0.19 -11.18 16 14 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 15 C -0.16 -4.02 7.77 37.16 0.29 -3.74 16 16 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 17 C -0.50 -13.06 8.01 -34.44 -0.28 -13.34 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.88 -23.87 9.35 55.43 0.52 -23.36 16 21 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.16 -1.97 9.00 -39.38 -0.35 -2.32 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.13 2.19 5.14 -52.49 -0.27 1.92 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.74 5.89 -51.93 -0.31 0.44 16 36 H 0.09 1.14 6.91 -51.93 -0.36 0.78 16 37 H 0.12 2.18 7.16 -51.92 -0.37 1.81 16 38 H 0.12 2.15 8.14 -51.93 -0.42 1.72 16 39 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 40 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 44 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 45 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 46 H 0.13 1.31 6.17 -52.49 -0.32 0.99 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -31.11 362.98 -9.60 -40.71 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.01 Total: 5.42 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: -1.37 Total: -36.10 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.30 Total: -38.31 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.55 Total: -41.72 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.41 Total: 49.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.11 -9.60 -40.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416525347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.686 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds