Wall clock time and date at job start Tue Mar 31 2020 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47308 * 2 1 4 4 C 1.38309 * 119.96377 * 270.02444 * 3 2 1 5 5 C 1.38262 * 120.15136 * 180.02562 * 4 3 2 6 6 C 1.38128 * 120.07630 * 359.73923 * 5 4 3 7 7 C 1.38892 * 119.91869 * 0.49234 * 6 5 4 8 8 N 1.39680 * 120.06927 * 179.79251 * 7 6 5 9 9 C 1.46504 * 119.99762 * 154.72192 * 8 7 6 10 10 S 1.65599 * 120.00184 * 334.71723 * 8 7 6 11 11 O 1.42105 * 104.27655 * 333.93077 * 10 8 7 12 12 O 1.42101 * 104.27764 * 206.07514 * 10 8 7 13 13 C 1.81395 * 104.44748 * 90.00382 * 10 8 7 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 8 15 15 C 1.53002 * 109.47371 * 299.99973 * 14 13 10 16 16 C 1.53002 * 109.47538 * 59.99873 * 14 13 10 17 17 C 1.50700 * 109.47535 * 180.02562 * 14 13 10 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 14 13 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47261 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47286 * 119.99607 * 21 19 17 24 24 H 1.48501 * 109.47023 * 239.99779 * 21 19 17 25 25 C 1.38085 * 119.96602 * 89.99565 * 3 2 1 26 26 H 1.08998 * 109.47220 * 299.99932 * 1 2 3 27 27 H 1.09001 * 109.46570 * 60.00220 * 1 2 3 28 28 H 1.09003 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47220 * 240.00068 * 2 1 3 30 30 H 1.09006 * 109.47243 * 119.99958 * 2 1 3 31 31 H 1.07998 * 119.92320 * 359.97061 * 4 3 2 32 32 H 1.08002 * 119.96681 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.03949 * 180.27561 * 6 5 4 34 34 H 1.08994 * 109.47028 * 269.99623 * 9 8 7 35 35 H 1.08993 * 109.47216 * 29.99770 * 9 8 7 36 36 H 1.08996 * 109.46988 * 149.99569 * 9 8 7 37 37 H 1.09003 * 109.47393 * 299.99669 * 13 10 8 38 38 H 1.08994 * 109.47678 * 60.00285 * 13 10 8 39 39 H 1.09003 * 109.46921 * 59.99370 * 15 14 13 40 40 H 1.08991 * 109.47533 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46766 * 300.00134 * 15 14 13 42 42 H 1.09004 * 109.47056 * 59.99837 * 16 14 13 43 43 H 1.08995 * 109.47291 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.46772 * 300.00176 * 16 14 13 45 45 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.03573 * 0.02790 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7236 3.3755 -1.2028 6 6 2.9515 4.0333 -0.0097 7 6 2.7264 3.3805 1.1953 8 7 2.9600 4.0412 2.4036 9 6 2.2450 3.6289 3.6140 10 16 4.0451 5.2905 2.4679 11 8 4.9471 5.0263 1.4021 12 8 4.4889 5.3000 3.8178 13 6 3.0553 6.7685 2.1127 14 6 3.9560 8.0048 2.1429 15 6 4.5930 8.1382 3.5276 16 6 5.0548 7.8613 1.0879 17 6 3.1337 9.2329 1.8484 18 1 2.0745 9.1407 1.6583 19 6 3.7336 10.4740 1.8206 20 7 5.0234 10.5862 2.0516 21 14 2.7143 11.9960 1.4549 22 1 1.2998 11.6027 1.2318 23 1 2.7926 12.9323 2.6049 24 1 3.2402 12.6630 0.2368 25 6 2.2622 2.0710 1.1963 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0816 1.5613 -2.1324 32 1 2.9024 3.8813 -2.1402 33 1 3.3077 5.0529 -0.0140 34 1 1.3151 4.1916 3.6961 35 1 2.0214 2.5636 3.5588 36 1 2.8666 3.8249 4.4877 37 1 2.6019 6.6737 1.1260 38 1 2.2723 6.8706 2.8640 39 1 5.1877 7.2500 3.7410 40 1 5.2343 9.0192 3.5492 41 1 3.8102 8.2406 4.2792 42 1 4.6011 7.7662 0.1013 43 1 5.6968 8.7418 1.1097 44 1 5.6496 6.9731 1.3013 45 1 5.4453 11.4594 2.0324 46 1 2.0826 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416525347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:32 Heat of formation + Delta-G solvation = -65.486555 kcal Electronic energy + Delta-G solvation = -26764.025250 eV Core-core repulsion = 23166.106587 eV Total energy + Delta-G solvation = -3597.918662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76237 -38.38120 -38.22115 -37.42069 -36.96554 -34.61734 -33.67985 -30.95620 -30.34330 -28.50942 -27.75059 -27.34945 -27.24516 -24.82356 -23.04579 -22.32134 -21.31034 -19.91880 -18.77909 -18.31621 -17.92137 -17.19258 -16.97688 -16.71437 -16.44322 -15.94512 -15.46993 -15.17985 -14.84942 -14.79265 -14.65171 -14.48786 -14.33483 -14.06172 -13.91789 -13.73993 -13.40472 -13.11845 -13.02269 -12.97059 -12.82327 -12.77685 -12.62524 -12.43817 -12.38530 -12.23226 -12.15488 -12.05552 -11.73360 -11.64696 -11.59813 -11.54214 -11.14331 -10.62728 -10.45370 -9.70087 -9.01044 -8.06399 -6.25363 -0.87280 0.41345 0.46770 1.41753 1.44795 1.51900 1.54673 2.41955 2.64576 2.88335 3.04489 3.16752 3.48317 3.81974 3.93511 3.96493 4.04927 4.17500 4.36434 4.39206 4.47414 4.52744 4.54434 4.60437 4.67416 4.71643 4.77843 4.79896 4.82119 4.89410 4.91708 5.02317 5.13542 5.16664 5.19470 5.32130 5.39094 5.45487 5.47483 5.53921 5.61352 5.65358 5.74430 5.92162 6.06038 6.14485 6.29463 6.79025 7.43244 8.93900 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.003616 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.989660 B = 7741.219049 C = 8265.520771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.057 4.057 4 C -0.146 4.146 5 C -0.088 4.088 6 C -0.192 4.192 7 C 0.160 3.840 8 N -0.947 5.947 9 C 0.057 3.943 10 S 2.599 3.401 11 O -0.973 6.973 12 O -0.976 6.976 13 C -0.581 4.581 14 C 0.072 3.928 15 C -0.161 4.161 16 C -0.160 4.160 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.019 3.981 20 N -0.907 5.907 21 Si 0.956 3.044 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.157 4.157 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.173 -19.949 -3.107 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.058 4.058 4 C -0.164 4.164 5 C -0.107 4.107 6 C -0.213 4.213 7 C 0.065 3.935 8 N -0.773 5.773 9 C -0.086 4.086 10 S 2.700 3.300 11 O -0.963 6.963 12 O -0.967 6.967 13 C -0.714 4.714 14 C 0.070 3.930 15 C -0.219 4.219 16 C -0.217 4.217 17 C -0.557 4.557 18 H 0.081 0.919 19 C -0.181 4.181 20 N -0.546 5.546 21 Si 0.782 3.218 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.179 4.179 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.098 -19.914 -2.770 22.068 hybrid contribution -0.510 1.769 -0.139 1.846 sum -9.608 -18.145 -2.909 20.737 Atomic orbital electron populations 1.21735 0.93897 1.02510 1.02040 1.20610 0.96698 0.90550 1.04036 1.20097 0.96471 0.97216 0.92029 1.21287 1.01748 0.94593 0.98806 1.21173 0.96874 0.95405 0.97203 1.21239 1.06151 1.01043 0.92907 1.17729 0.98816 0.93048 0.83926 1.55460 1.58885 1.48473 1.14449 1.22157 0.97705 1.04385 0.84321 1.05430 0.75231 0.75759 0.73623 1.93546 1.61770 1.83871 1.57152 1.93502 1.79575 1.86731 1.36843 1.30507 1.13747 1.15140 1.11998 1.17931 0.91575 0.90587 0.92940 1.22223 1.00724 1.01613 0.97312 1.22208 0.99786 1.01022 0.98719 1.21288 0.94928 0.91025 1.48491 0.91929 1.25675 0.95976 1.01614 0.94808 1.69943 1.10640 1.24452 1.49532 0.85538 0.79227 0.79472 0.77596 1.19004 1.20801 1.20847 1.20971 1.05136 0.91919 0.99863 0.92969 0.92716 0.90935 0.89558 0.90160 0.83310 0.84019 0.87150 0.89762 0.87330 0.89514 0.84885 0.84341 0.95086 0.90751 0.93858 0.94072 0.90796 0.95018 0.92810 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.08 -1.03 6.06 29.85 0.18 -0.85 16 3 C -0.06 -1.12 5.13 -19.89 -0.10 -1.22 16 4 C -0.15 -2.94 9.70 22.29 0.22 -2.72 16 5 C -0.09 -2.21 10.04 22.25 0.22 -1.99 16 6 C -0.19 -5.98 8.42 22.40 0.19 -5.79 16 7 C 0.16 4.69 6.06 38.21 0.23 4.92 16 8 N -0.95 -28.46 3.32 -360.82 -1.20 -29.66 16 9 C 0.06 1.26 10.45 127.77 1.34 2.59 16 10 S 2.60 100.26 3.82 -56.49 -0.22 100.05 16 11 O -0.97 -42.36 12.81 -127.65 -1.64 -43.99 16 12 O -0.98 -41.23 14.20 -127.65 -1.81 -43.04 16 13 C -0.58 -22.90 4.98 71.98 0.36 -22.54 16 14 C 0.07 3.50 0.52 -52.93 -0.03 3.48 16 15 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 16 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 17 C -0.52 -27.12 8.01 25.60 0.21 -26.91 16 18 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 19 C 0.02 1.00 5.15 84.65 0.44 1.43 16 20 N -0.91 -50.17 9.35 21.45 0.20 -49.97 16 21 Si 0.96 42.10 29.54 68.60 2.03 44.13 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.16 -3.59 9.00 22.40 0.20 -3.39 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.08 0.89 8.08 -2.38 -0.02 0.87 16 31 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.11 3.81 5.14 -2.91 -0.01 3.80 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 1.71 5.89 -2.39 -0.01 1.69 16 36 H 0.09 2.02 6.91 -2.39 -0.02 2.00 16 37 H 0.13 4.85 7.16 -2.39 -0.02 4.83 16 38 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 39 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 40 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 41 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 4.03 6.07 -2.39 -0.01 4.02 16 44 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 45 H 0.26 13.84 8.31 -92.71 -0.77 13.06 16 46 H 0.15 2.58 6.17 -2.91 -0.02 2.56 16 Total: -1.00 -67.79 362.98 3.61 -64.17 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.97 Total: 27.11 kcal Atomic # 6 Polarization: -74.08 SS G_CDS: 5.28 Total: -68.81 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.00 Total: -79.62 kcal Atomic # 8 Polarization: -83.59 SS G_CDS: -3.45 Total: -87.03 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 100.26 SS G_CDS: -0.22 Total: 100.05 kcal Total: -67.79 3.61 -64.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416525347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.312 kcal (2) G-P(sol) polarization free energy of solvation -67.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds