Wall clock time and date at job start Tue Mar 31 2020 14:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38239 * 119.99397 * 179.74382 * 4 3 2 6 6 C 1.38234 * 120.00090 * 0.52875 * 5 4 3 7 7 C 1.50696 * 119.99660 * 179.76840 * 6 5 4 8 8 S 1.81400 * 109.47463 * 269.97698 * 7 6 5 9 9 O 1.42101 * 110.54218 * 291.62944 * 8 7 6 10 10 O 1.42101 * 110.53960 * 68.37490 * 8 7 6 11 11 N 1.65602 * 104.45038 * 180.02562 * 8 7 6 12 12 C 1.46496 * 120.00113 * 65.00424 * 11 8 7 13 13 C 1.52997 * 109.47265 * 164.99846 * 12 11 8 14 14 C 1.52998 * 109.47172 * 299.99731 * 13 12 11 15 15 C 1.53007 * 109.47130 * 59.99515 * 13 12 11 16 16 C 1.50695 * 109.47269 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99975 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00124 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99859 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00050 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47123 * 59.99505 * 20 18 16 22 22 H 1.48503 * 109.47347 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47359 * 299.99658 * 20 18 16 24 24 C 1.38231 * 120.00111 * 359.74656 * 6 5 4 25 25 C 1.38233 * 119.99821 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 31 31 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.99425 * 180.29723 * 5 4 3 33 33 H 1.09003 * 109.47624 * 29.97927 * 7 6 5 34 34 H 1.09002 * 109.47280 * 149.97772 * 7 6 5 35 35 H 0.97004 * 119.99705 * 244.99718 * 11 8 7 36 36 H 1.09002 * 109.46682 * 284.99436 * 12 11 8 37 37 H 1.09002 * 109.47060 * 44.99489 * 12 11 8 38 38 H 1.09002 * 109.47104 * 59.99640 * 14 13 12 39 39 H 1.08996 * 109.47367 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.47056 * 300.00297 * 14 13 12 41 41 H 1.08997 * 109.46736 * 60.00604 * 15 13 12 42 42 H 1.08998 * 109.46845 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47010 * 300.00277 * 15 13 12 44 44 H 0.97002 * 119.99546 * 180.02562 * 19 18 16 45 45 H 1.07996 * 120.00113 * 179.97438 * 24 6 5 46 46 H 1.08003 * 119.99863 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7238 3.3757 -1.1970 6 6 2.9542 4.0273 0.0002 7 6 3.4560 5.4482 0.0001 8 16 5.2700 5.4490 0.0004 9 8 5.7687 4.9588 1.2375 10 8 5.7690 4.9588 -1.2365 11 7 5.6826 7.0528 0.0011 12 6 5.3457 7.8954 1.1512 13 6 6.1419 9.1998 1.0785 14 6 7.6391 8.8852 1.0979 15 6 5.7929 9.9389 -0.2150 16 6 5.7949 10.0667 2.2612 17 1 5.0778 9.7220 2.9916 18 6 6.3921 11.3005 2.4105 19 7 7.2649 11.7205 1.5209 20 14 5.9615 12.3754 3.8762 21 1 6.2997 11.6587 5.1321 22 1 6.7344 13.6415 3.8057 23 1 4.5082 12.6804 3.8565 24 6 2.7239 3.3756 1.1972 25 6 2.2627 2.0725 1.1972 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0926 1.5599 -2.1324 32 1 2.9034 3.8849 -2.1324 33 1 3.0926 5.9620 -0.8899 34 1 3.0924 5.9620 0.8900 35 1 6.1474 7.4343 -0.7601 36 1 4.2791 8.1195 1.1373 37 1 5.5944 7.3687 2.0726 38 1 7.8898 8.2583 0.2422 39 1 8.2064 9.8144 1.0457 40 1 7.8877 8.3586 2.0193 41 1 4.7263 10.1631 -0.2287 42 1 6.3598 10.8684 -0.2665 43 1 6.0436 9.3120 -1.0707 44 1 7.6853 12.5883 1.6261 45 1 2.9043 3.8845 2.1325 46 1 2.0831 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416526983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:19 Heat of formation + Delta-G solvation = -69.614155 kcal Electronic energy + Delta-G solvation = -25518.981228 eV Core-core repulsion = 21920.883580 eV Total energy + Delta-G solvation = -3598.097648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.75374 -37.04112 -36.69354 -35.66727 -35.08696 -33.22610 -31.48568 -31.15179 -30.54079 -27.21923 -25.69209 -25.53474 -24.51482 -23.46682 -22.97872 -20.90191 -19.19471 -18.82839 -17.53161 -16.72290 -16.15599 -16.01203 -15.75035 -15.57554 -15.25637 -14.75972 -14.16959 -14.09267 -13.96824 -13.61049 -13.50495 -13.25450 -13.07101 -12.70913 -12.65674 -12.24766 -12.08838 -11.86445 -11.81789 -11.69269 -11.50976 -11.46964 -11.21294 -11.11462 -11.06469 -10.95207 -10.84198 -10.71193 -10.39453 -10.17412 -9.65224 -9.33976 -9.13383 -8.95047 -8.79349 -8.58530 -8.36853 -6.01612 -4.12763 0.33933 1.17611 1.19726 3.08289 3.28470 3.33732 3.36403 3.50255 3.94346 4.26760 4.33724 4.38503 4.53913 4.57269 4.80887 4.83527 5.02633 5.08241 5.21901 5.24441 5.24700 5.35947 5.37872 5.56678 5.64085 5.76064 5.77484 5.85799 5.88759 6.14991 6.17699 6.30639 6.38109 6.43291 6.49328 6.75359 6.75942 6.92235 7.00270 7.07933 7.35368 7.53587 7.59709 7.69793 8.03874 8.15256 8.39218 8.87255 9.52923 10.99446 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.002665 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.008289 B =10502.623079 C =11057.736665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.080 4.080 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.091 4.091 7 C -0.591 4.591 8 S 2.608 3.392 9 O -0.952 6.952 10 O -0.966 6.966 11 N -1.109 6.109 12 C 0.124 3.876 13 C 0.063 3.937 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.510 4.510 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.102 4.102 25 C -0.116 4.116 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.416 0.584 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.010 0.990 39 H 0.084 0.916 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.086 0.914 43 H 0.009 0.991 44 H 0.261 0.739 45 H 0.132 0.868 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 -17.823 -4.850 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.135 4.135 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.717 4.717 8 S 2.699 3.301 9 O -0.942 6.942 10 O -0.956 6.956 11 N -0.872 5.872 12 C -0.002 4.002 13 C 0.062 3.938 14 C -0.190 4.190 15 C -0.190 4.190 16 C -0.548 4.548 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.121 4.121 25 C -0.134 4.134 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.253 0.747 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.029 0.971 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.150 0.850 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.313 -18.432 -4.722 22.136 hybrid contribution -0.714 1.339 0.486 1.594 sum -12.027 -17.093 -4.236 21.325 Atomic orbital electron populations 1.21750 0.94622 1.01721 1.02318 1.20571 0.96236 0.92482 1.03082 1.20002 0.98414 0.96356 0.93239 1.21017 1.00091 0.94564 0.97790 1.21169 0.98355 0.95157 0.97561 1.19006 1.03060 0.92858 0.94334 1.29719 1.28709 1.00715 1.12582 1.05059 0.76957 0.73614 0.74424 1.93585 1.76031 1.79123 1.45459 1.93559 1.77424 1.79242 1.45352 1.55561 1.73108 1.29128 1.29369 1.21692 0.98828 0.93939 0.85703 1.18252 0.91925 0.88701 0.94966 1.21813 0.99034 1.01116 0.96996 1.21844 0.99615 1.02236 0.95324 1.20967 1.24785 1.01335 1.07756 0.92504 1.24892 0.94834 0.97630 0.96176 1.69804 1.27841 1.19957 1.34615 0.86646 0.78383 0.79711 0.83140 1.20275 1.21356 1.20362 1.21207 0.98016 0.95165 0.97696 1.21035 0.99927 0.94582 0.97822 0.92479 0.92361 0.92522 0.90831 0.90867 0.85599 0.85183 0.84098 0.83964 0.74721 0.93188 0.91386 0.97080 0.89780 0.95348 0.95452 0.89564 0.97238 0.92925 0.84999 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.09 -0.61 6.07 -27.88 -0.17 -0.78 16 3 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 5 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 6 C -0.09 -1.13 5.14 -104.63 -0.54 -1.67 16 7 C -0.59 -7.07 6.20 36.00 0.22 -6.84 16 8 S 2.61 41.19 5.44 -107.50 -0.59 40.61 16 9 O -0.95 -18.06 17.49 -57.54 -1.01 -19.06 16 10 O -0.97 -17.21 18.08 -57.54 -1.04 -18.25 16 11 N -1.11 -18.64 5.22 -10.62 -0.06 -18.69 16 12 C 0.12 2.36 4.96 -4.05 -0.02 2.34 16 13 C 0.06 1.44 0.51 -155.66 -0.08 1.36 16 14 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 17 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -23.45 9.35 55.43 0.52 -22.94 16 20 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.10 -1.21 9.70 -39.59 -0.38 -1.59 16 25 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.14 1.37 8.09 -51.92 -0.42 0.95 16 34 H 0.14 1.49 8.09 -51.92 -0.42 1.07 16 35 H 0.42 6.85 6.44 -34.47 -0.22 6.63 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.34 7.69 -51.93 -0.40 0.94 16 38 H 0.01 0.22 7.20 -51.93 -0.37 -0.15 16 39 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 43 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 44 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 45 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -31.09 382.02 -10.91 -41.99 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.42 Total: 6.00 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -2.06 Total: -30.74 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.46 Total: -41.63 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -2.05 Total: -37.32 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 41.19 SS G_CDS: -0.59 Total: 40.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.09 -10.91 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416526983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.619 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds