Wall clock time and date at job start Tue Mar 31 2020 14:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38239 * 119.99397 * 179.74382 * 4 3 2 6 6 C 1.38234 * 120.00090 * 0.52875 * 5 4 3 7 7 C 1.50696 * 119.99660 * 179.76840 * 6 5 4 8 8 S 1.81400 * 109.47463 * 269.97698 * 7 6 5 9 9 O 1.42101 * 110.54218 * 291.62944 * 8 7 6 10 10 O 1.42101 * 110.53960 * 68.37490 * 8 7 6 11 11 N 1.65602 * 104.45038 * 180.02562 * 8 7 6 12 12 C 1.46496 * 120.00113 * 65.00424 * 11 8 7 13 13 C 1.52997 * 109.47265 * 164.99846 * 12 11 8 14 14 C 1.52998 * 109.47172 * 299.99731 * 13 12 11 15 15 C 1.53007 * 109.47130 * 59.99515 * 13 12 11 16 16 C 1.50695 * 109.47269 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99975 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00124 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99859 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00050 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47123 * 59.99505 * 20 18 16 22 22 H 1.48503 * 109.47347 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47359 * 299.99658 * 20 18 16 24 24 C 1.38231 * 120.00111 * 359.74656 * 6 5 4 25 25 C 1.38233 * 119.99821 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 31 31 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.99425 * 180.29723 * 5 4 3 33 33 H 1.09003 * 109.47624 * 29.97927 * 7 6 5 34 34 H 1.09002 * 109.47280 * 149.97772 * 7 6 5 35 35 H 0.97004 * 119.99705 * 244.99718 * 11 8 7 36 36 H 1.09002 * 109.46682 * 284.99436 * 12 11 8 37 37 H 1.09002 * 109.47060 * 44.99489 * 12 11 8 38 38 H 1.09002 * 109.47104 * 59.99640 * 14 13 12 39 39 H 1.08996 * 109.47367 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.47056 * 300.00297 * 14 13 12 41 41 H 1.08997 * 109.46736 * 60.00604 * 15 13 12 42 42 H 1.08998 * 109.46845 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47010 * 300.00277 * 15 13 12 44 44 H 0.97002 * 119.99546 * 180.02562 * 19 18 16 45 45 H 1.07996 * 120.00113 * 179.97438 * 24 6 5 46 46 H 1.08003 * 119.99863 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7238 3.3757 -1.1970 6 6 2.9542 4.0273 0.0002 7 6 3.4560 5.4482 0.0001 8 16 5.2700 5.4490 0.0004 9 8 5.7687 4.9588 1.2375 10 8 5.7690 4.9588 -1.2365 11 7 5.6826 7.0528 0.0011 12 6 5.3457 7.8954 1.1512 13 6 6.1419 9.1998 1.0785 14 6 7.6391 8.8852 1.0979 15 6 5.7929 9.9389 -0.2150 16 6 5.7949 10.0667 2.2612 17 1 5.0778 9.7220 2.9916 18 6 6.3921 11.3005 2.4105 19 7 7.2649 11.7205 1.5209 20 14 5.9615 12.3754 3.8762 21 1 6.2997 11.6587 5.1321 22 1 6.7344 13.6415 3.8057 23 1 4.5082 12.6804 3.8565 24 6 2.7239 3.3756 1.1972 25 6 2.2627 2.0725 1.1972 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0926 1.5599 -2.1324 32 1 2.9034 3.8849 -2.1324 33 1 3.0926 5.9620 -0.8899 34 1 3.0924 5.9620 0.8900 35 1 6.1474 7.4343 -0.7601 36 1 4.2791 8.1195 1.1373 37 1 5.5944 7.3687 2.0726 38 1 7.8898 8.2583 0.2422 39 1 8.2064 9.8144 1.0457 40 1 7.8877 8.3586 2.0193 41 1 4.7263 10.1631 -0.2287 42 1 6.3598 10.8684 -0.2665 43 1 6.0436 9.3120 -1.0707 44 1 7.6853 12.5883 1.6261 45 1 2.9043 3.8845 2.1325 46 1 2.0831 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416526983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:18 Heat of formation + Delta-G solvation = -87.907835 kcal Electronic energy + Delta-G solvation = -25519.774502 eV Core-core repulsion = 21920.883580 eV Total energy + Delta-G solvation = -3598.890922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52733 -38.63676 -38.10095 -37.00645 -35.79614 -34.90884 -32.34686 -32.18956 -31.93597 -28.01474 -27.50652 -27.36770 -26.20579 -24.12331 -23.76940 -21.65109 -20.76279 -20.29176 -18.88508 -17.76964 -17.64523 -17.30118 -16.89290 -16.60819 -16.44264 -16.11607 -15.54295 -15.11542 -14.87383 -14.68235 -14.65497 -14.35761 -14.04344 -13.96768 -13.57946 -13.45701 -13.35337 -13.26796 -13.18702 -13.08700 -12.88994 -12.74269 -12.67142 -12.52539 -12.24458 -12.15222 -12.07344 -12.02199 -11.77213 -11.68614 -11.44298 -11.08473 -10.65466 -10.38978 -10.20372 -9.93708 -9.49572 -7.96492 -6.12890 -0.84210 0.33435 0.39607 1.47319 1.49073 1.54642 1.81950 2.49353 2.66244 2.83451 3.20567 3.27223 3.39373 3.76128 3.88098 4.04201 4.06005 4.24364 4.35926 4.43856 4.50945 4.54627 4.60189 4.63733 4.70015 4.77934 4.83875 5.02120 5.04536 5.10472 5.11623 5.13556 5.15156 5.25647 5.28948 5.37594 5.41819 5.46930 5.54207 5.64911 5.71839 5.72935 5.99204 6.11434 6.20729 6.30696 6.48386 6.94367 7.54882 9.02152 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.002665 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.008289 B =10502.623079 C =11057.736665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.079 4.079 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.564 4.564 8 S 2.609 3.391 9 O -0.993 6.993 10 O -0.990 6.990 11 N -1.111 6.111 12 C 0.132 3.868 13 C 0.052 3.948 14 C -0.126 4.126 15 C -0.124 4.124 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.022 3.978 19 N -0.904 5.904 20 Si 0.946 3.054 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.271 1.271 24 C -0.119 4.119 25 C -0.125 4.125 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.417 0.583 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.033 0.967 44 H 0.257 0.743 45 H 0.136 0.864 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -19.208 -5.218 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.080 4.080 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.119 4.119 7 C -0.694 4.694 8 S 2.707 3.293 9 O -0.983 6.983 10 O -0.981 6.981 11 N -0.872 5.872 12 C 0.006 3.994 13 C 0.050 3.950 14 C -0.184 4.184 15 C -0.182 4.182 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.177 4.177 19 N -0.543 5.543 20 Si 0.773 3.227 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.196 1.196 24 C -0.138 4.138 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.253 0.747 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.153 0.847 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.428 -19.807 -5.089 24.465 hybrid contribution -0.105 1.639 0.577 1.741 sum -13.533 -18.168 -4.512 23.099 Atomic orbital electron populations 1.21735 0.93891 1.02568 1.01999 1.20644 0.96754 0.90889 1.04046 1.20382 0.97181 0.97532 0.92904 1.21364 0.99514 0.94299 0.99031 1.21459 0.98401 0.95940 0.97767 1.19154 1.04621 0.93126 0.95025 1.29441 1.23381 1.01642 1.14963 1.04861 0.78744 0.72653 0.73067 1.93531 1.78360 1.79573 1.46795 1.93520 1.79281 1.79331 1.45936 1.55429 1.74091 1.29021 1.28679 1.21448 0.99599 0.92220 0.86136 1.18314 0.91769 0.90375 0.94564 1.21719 0.99700 0.99900 0.97065 1.21696 0.99437 1.01174 0.95921 1.21344 1.24524 1.01764 1.08615 0.92450 1.25541 0.95050 0.98920 0.98238 1.69946 1.28570 1.19975 1.35792 0.85806 0.78301 0.78087 0.80509 1.20348 1.21614 1.19639 1.21449 0.98485 0.96045 0.97857 1.21344 0.99595 0.94287 0.99097 0.92906 0.90962 0.92748 0.90025 0.89820 0.83376 0.84088 0.81356 0.82166 0.74660 0.90666 0.92431 0.95443 0.92252 0.96536 0.94829 0.92495 0.94818 0.93322 0.84652 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 71.98 0.71 -0.73 16 2 C -0.09 -1.00 6.07 29.85 0.18 -0.82 16 3 C -0.08 -1.37 5.13 -19.86 -0.10 -1.47 16 4 C -0.12 -2.24 9.70 22.27 0.22 -2.03 16 5 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 6 C -0.12 -2.71 5.14 -19.87 -0.10 -2.82 16 7 C -0.56 -12.20 6.20 71.23 0.44 -11.76 16 8 S 2.61 80.19 5.44 -56.49 -0.31 79.88 16 9 O -0.99 -37.74 17.49 -127.65 -2.23 -39.98 16 10 O -0.99 -34.71 18.08 -127.65 -2.31 -37.02 16 11 N -1.11 -36.07 5.22 -187.50 -0.98 -37.04 16 12 C 0.13 4.87 4.96 86.38 0.43 5.30 16 13 C 0.05 2.32 0.51 -52.93 -0.03 2.30 16 14 C -0.13 -5.95 8.08 71.98 0.58 -5.37 16 15 C -0.12 -5.37 8.08 71.98 0.58 -4.78 16 16 C -0.52 -26.45 8.01 25.60 0.21 -26.24 16 17 H 0.06 2.82 7.74 -2.91 -0.02 2.79 16 18 C 0.02 1.13 5.15 84.66 0.44 1.57 16 19 N -0.90 -48.65 9.35 21.45 0.20 -48.45 16 20 Si 0.95 41.71 29.54 68.60 2.03 43.74 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 25 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.17 2.73 8.09 -2.39 -0.02 2.71 16 34 H 0.16 2.92 8.09 -2.39 -0.02 2.91 16 35 H 0.42 13.25 6.44 -96.74 -0.62 12.63 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 37 H 0.06 2.24 7.69 -2.39 -0.02 2.22 16 38 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 39 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 2.81 6.07 -2.39 -0.01 2.79 16 43 H 0.03 1.24 6.60 -2.39 -0.02 1.23 16 44 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 45 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 46 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -66.95 382.02 0.94 -66.01 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.34 Total: 26.59 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 4.20 Total: -53.73 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -0.78 Total: -85.49 kcal Atomic # 8 Polarization: -72.45 SS G_CDS: -4.54 Total: -77.00 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 80.19 SS G_CDS: -0.31 Total: 79.88 kcal Total: -66.95 0.94 -66.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416526983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.894 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds