Wall clock time and date at job start Tue Mar 31 2020 14:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.50704 * 109.46902 * 120.00275 * 2 1 3 5 5 C 1.38234 * 120.00277 * 120.00076 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 C 1.52998 * 109.46901 * 164.99878 * 12 11 8 14 14 C 1.52999 * 109.47326 * 300.00149 * 13 12 11 15 15 C 1.53005 * 109.47134 * 59.99666 * 13 12 11 16 16 C 1.50692 * 109.47350 * 179.97438 * 13 12 11 17 17 H 1.08006 * 120.00253 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00405 * 180.02562 * 16 13 12 19 19 N 1.31506 * 119.99836 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00222 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47140 * 89.99718 * 20 18 16 22 22 H 1.48499 * 109.47261 * 210.00069 * 20 18 16 23 23 H 1.48502 * 109.46903 * 330.00024 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 25 25 C 1.38235 * 119.99518 * 300.01759 * 4 2 1 26 26 H 1.08995 * 109.47212 * 300.00100 * 1 2 3 27 27 H 1.09007 * 109.47020 * 59.99975 * 1 2 3 28 28 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46966 * 239.99231 * 2 1 3 30 30 H 1.08995 * 109.46969 * 59.99751 * 3 2 1 31 31 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47004 * 300.00035 * 3 2 1 33 33 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 35 35 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 36 36 H 1.09000 * 109.47104 * 284.99861 * 12 11 8 37 37 H 1.08996 * 109.47400 * 45.00315 * 12 11 8 38 38 H 1.09000 * 109.47390 * 60.00038 * 14 13 12 39 39 H 1.09002 * 109.47234 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.46605 * 299.99631 * 14 13 12 41 41 H 1.09000 * 109.46866 * 60.00020 * 15 13 12 42 42 H 1.08997 * 109.47187 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.47382 * 300.00315 * 15 13 12 44 44 H 0.97000 * 120.00202 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 7 6 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2872 -2.4863 2.2324 7 6 2.9532 -2.0141 3.4879 8 16 3.5334 -2.8497 4.9266 9 8 2.6331 -2.5169 5.9744 10 8 3.8057 -4.1871 4.5314 11 7 4.9910 -2.1755 5.3307 12 6 5.0577 -0.7750 5.7555 13 6 6.4107 -0.5068 6.4174 14 6 6.5718 -1.4176 7.6361 15 6 7.5331 -0.7904 5.4170 16 6 6.4796 0.9339 6.8538 17 1 5.6420 1.5924 6.6772 18 6 7.6121 1.4116 7.4787 19 7 8.6319 0.6098 7.6943 20 14 7.6972 3.1974 8.0204 21 1 7.1816 3.3189 9.4077 22 1 9.1067 3.6622 7.9735 23 1 6.8707 4.0305 7.1104 24 6 2.1594 -0.8896 3.6147 25 6 1.6979 -0.2384 2.4860 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.6767 1.9562 0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.0876 -2.2036 0.1228 34 1 3.9078 -3.3647 2.1334 35 1 5.8006 -2.7079 5.2860 36 1 4.9430 -0.1261 4.8872 37 1 4.2582 -0.5731 6.4682 38 1 6.5222 -2.4596 7.3201 39 1 7.5360 -1.2268 8.1075 40 1 5.7723 -1.2156 8.3488 41 1 7.4184 -0.1415 4.5487 42 1 8.4970 -0.5988 5.8884 43 1 7.4835 -1.8323 5.1009 44 1 9.4287 0.9459 8.1336 45 1 1.8980 -0.5208 4.5956 46 1 1.0771 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416529718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:34 Heat of formation + Delta-G solvation = -71.417150 kcal Electronic energy + Delta-G solvation = -26121.296786 eV Core-core repulsion = 22523.120954 eV Total energy + Delta-G solvation = -3598.175832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72837 -37.08549 -36.74012 -35.72542 -35.52810 -33.20526 -31.16689 -30.53412 -30.16114 -27.45210 -25.68165 -25.53300 -24.51041 -23.97533 -22.91308 -20.46424 -19.29645 -18.89148 -17.90060 -17.20082 -16.21054 -15.76067 -15.70145 -15.19172 -14.73764 -14.69928 -14.19543 -13.96608 -13.90900 -13.60636 -13.44575 -13.21118 -13.10027 -12.77075 -12.40977 -12.23474 -11.85868 -11.82171 -11.72995 -11.62321 -11.51005 -11.45910 -11.40151 -11.10593 -10.94584 -10.92673 -10.68149 -10.58172 -10.38075 -10.16792 -9.64477 -9.33582 -9.21106 -9.10177 -8.82092 -8.76106 -8.36561 -6.01013 -4.11808 0.60719 0.86855 1.24239 3.23289 3.27731 3.34990 3.37382 3.55697 4.04208 4.30749 4.38813 4.42357 4.59284 4.82304 4.85852 4.93270 5.09696 5.21012 5.25545 5.31809 5.35551 5.51661 5.54415 5.63492 5.66455 5.80628 5.85158 5.89335 5.93944 6.05704 6.10830 6.20434 6.36073 6.46513 6.50996 6.76294 6.77965 6.92570 7.02133 7.07893 7.36275 7.54011 7.60592 7.70818 8.04834 8.16293 8.40369 8.88430 9.53873 11.00152 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.003843 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.827676 B = 7283.596591 C = 8729.508756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.027 4.027 5 C -0.143 4.143 6 C -0.016 4.016 7 C -0.675 4.675 8 S 2.691 3.309 9 O -0.961 6.961 10 O -0.973 6.973 11 N -1.106 6.106 12 C 0.128 3.872 13 C 0.064 3.936 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.014 4.014 25 C -0.138 4.138 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.417 0.583 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.010 0.990 39 H 0.084 0.916 40 H 0.028 0.972 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.008 0.992 44 H 0.260 0.740 45 H 0.141 0.859 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.960 -2.256 -14.662 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.203 4.203 4 C -0.027 4.027 5 C -0.162 4.162 6 C -0.035 4.035 7 C -0.761 4.761 8 S 2.780 3.220 9 O -0.951 6.951 10 O -0.963 6.963 11 N -0.869 5.869 12 C 0.003 3.997 13 C 0.062 3.938 14 C -0.190 4.190 15 C -0.189 4.189 16 C -0.547 4.547 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.033 4.033 25 C -0.156 4.156 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.029 0.971 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.159 0.841 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.377 -2.800 -14.144 19.002 hybrid contribution 0.501 1.310 -0.335 1.442 sum -11.876 -1.490 -14.479 18.785 Atomic orbital electron populations 1.21867 0.93929 1.02190 1.02248 1.20262 0.96279 0.96460 0.95182 1.21872 1.01633 0.94595 1.02244 1.20185 0.93765 0.93836 0.94928 1.21143 0.99799 0.96422 0.98797 1.20891 0.94489 0.97205 0.90888 1.31091 1.14434 1.12287 1.18286 1.01856 0.73366 0.72966 0.73809 1.93570 1.63963 1.84589 1.52969 1.93547 1.84918 1.33912 1.83948 1.55444 1.25071 1.23640 1.82738 1.21664 1.02609 0.77371 0.98067 1.18252 0.88036 0.95511 0.91979 1.21827 1.03163 0.95047 0.99013 1.21833 1.03556 0.95488 0.98067 1.21006 1.01116 0.94213 1.38355 0.92467 1.24882 0.95609 0.97476 0.95520 1.69808 1.05257 1.34680 1.42521 0.86596 0.77140 0.85165 0.79072 1.20694 1.21319 1.19988 1.20978 0.91273 0.91210 0.99877 1.21086 1.01859 1.00861 0.91842 0.92172 0.92121 0.92435 0.90129 0.92104 0.92184 0.92151 0.85368 0.84371 0.74635 0.93122 0.91468 0.97081 0.89750 0.95320 0.95497 0.89595 0.97263 0.93003 0.84108 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.01 37.16 0.33 -0.69 16 2 C -0.06 -0.51 3.09 -91.77 -0.28 -0.79 16 3 C -0.15 -1.13 9.01 37.16 0.33 -0.80 16 4 C -0.03 -0.29 4.78 -104.62 -0.50 -0.79 16 5 C -0.14 -1.58 9.67 -39.59 -0.38 -1.97 16 6 C -0.02 -0.20 9.52 -39.59 -0.38 -0.58 16 7 C -0.67 -9.67 5.95 -39.58 -0.24 -9.91 16 8 S 2.69 43.87 5.74 -107.50 -0.62 43.25 16 9 O -0.96 -18.09 16.75 -57.17 -0.96 -19.04 16 10 O -0.97 -17.25 17.28 -57.17 -0.99 -18.24 16 11 N -1.11 -18.85 5.33 -10.62 -0.06 -18.91 16 12 C 0.13 2.49 5.05 -4.04 -0.02 2.47 16 13 C 0.06 1.46 0.51 -155.66 -0.08 1.38 16 14 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.51 -12.94 8.01 -34.44 -0.28 -13.22 16 17 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.88 -23.46 9.35 55.43 0.52 -22.94 16 20 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.01 -0.19 9.52 -39.58 -0.38 -0.57 16 25 C -0.14 -1.58 8.71 -39.58 -0.34 -1.93 16 26 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 27 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.57 7.88 -51.93 -0.41 0.17 16 30 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.13 1.09 7.95 -52.49 -0.42 0.67 16 34 H 0.14 1.60 7.62 -52.49 -0.40 1.20 16 35 H 0.42 6.81 6.47 -34.47 -0.22 6.59 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.33 7.75 -51.93 -0.40 0.92 16 38 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 39 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.01 0.17 6.60 -51.93 -0.34 -0.18 16 44 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 45 H 0.14 1.82 7.62 -52.49 -0.40 1.42 16 46 H 0.13 1.21 7.10 -52.49 -0.37 0.83 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -30.17 375.61 -10.40 -40.57 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.24 Total: 5.44 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: -1.70 Total: -31.13 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.46 Total: -41.85 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.95 Total: -37.28 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 43.87 SS G_CDS: -0.62 Total: 43.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.17 -10.40 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416529718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.850 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds