Wall clock time and date at job start Tue Mar 31 2020 14:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.50704 * 109.46902 * 120.00275 * 2 1 3 5 5 C 1.38234 * 120.00277 * 120.00076 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 C 1.52998 * 109.46901 * 164.99878 * 12 11 8 14 14 C 1.52999 * 109.47326 * 300.00149 * 13 12 11 15 15 C 1.53005 * 109.47134 * 59.99666 * 13 12 11 16 16 C 1.50692 * 109.47350 * 179.97438 * 13 12 11 17 17 H 1.08006 * 120.00253 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00405 * 180.02562 * 16 13 12 19 19 N 1.31506 * 119.99836 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00222 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47140 * 89.99718 * 20 18 16 22 22 H 1.48499 * 109.47261 * 210.00069 * 20 18 16 23 23 H 1.48502 * 109.46903 * 330.00024 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 25 25 C 1.38235 * 119.99518 * 300.01759 * 4 2 1 26 26 H 1.08995 * 109.47212 * 300.00100 * 1 2 3 27 27 H 1.09007 * 109.47020 * 59.99975 * 1 2 3 28 28 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46966 * 239.99231 * 2 1 3 30 30 H 1.08995 * 109.46969 * 59.99751 * 3 2 1 31 31 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47004 * 300.00035 * 3 2 1 33 33 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 35 35 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 36 36 H 1.09000 * 109.47104 * 284.99861 * 12 11 8 37 37 H 1.08996 * 109.47400 * 45.00315 * 12 11 8 38 38 H 1.09000 * 109.47390 * 60.00038 * 14 13 12 39 39 H 1.09002 * 109.47234 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.46605 * 299.99631 * 14 13 12 41 41 H 1.09000 * 109.46866 * 60.00020 * 15 13 12 42 42 H 1.08997 * 109.47187 * 179.97438 * 15 13 12 43 43 H 1.08994 * 109.47382 * 300.00315 * 15 13 12 44 44 H 0.97000 * 120.00202 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 7 6 46 46 H 1.07997 * 120.00423 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2872 -2.4863 2.2324 7 6 2.9532 -2.0141 3.4879 8 16 3.5334 -2.8497 4.9266 9 8 2.6331 -2.5169 5.9744 10 8 3.8057 -4.1871 4.5314 11 7 4.9910 -2.1755 5.3307 12 6 5.0577 -0.7750 5.7555 13 6 6.4107 -0.5068 6.4174 14 6 6.5718 -1.4176 7.6361 15 6 7.5331 -0.7904 5.4170 16 6 6.4796 0.9339 6.8538 17 1 5.6420 1.5924 6.6772 18 6 7.6121 1.4116 7.4787 19 7 8.6319 0.6098 7.6943 20 14 7.6972 3.1974 8.0204 21 1 7.1816 3.3189 9.4077 22 1 9.1067 3.6622 7.9735 23 1 6.8707 4.0305 7.1104 24 6 2.1594 -0.8896 3.6147 25 6 1.6979 -0.2384 2.4860 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.6767 1.9562 0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.0876 -2.2036 0.1228 34 1 3.9078 -3.3647 2.1334 35 1 5.8006 -2.7079 5.2860 36 1 4.9430 -0.1261 4.8872 37 1 4.2582 -0.5731 6.4682 38 1 6.5222 -2.4596 7.3201 39 1 7.5360 -1.2268 8.1075 40 1 5.7723 -1.2156 8.3488 41 1 7.4184 -0.1415 4.5487 42 1 8.4970 -0.5988 5.8884 43 1 7.4835 -1.8323 5.1009 44 1 9.4287 0.9459 8.1336 45 1 1.8980 -0.5208 4.5956 46 1 1.0771 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416529718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:33 Heat of formation + Delta-G solvation = -88.798429 kcal Electronic energy + Delta-G solvation = -26122.050495 eV Core-core repulsion = 22523.120954 eV Total energy + Delta-G solvation = -3598.929541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59819 -38.67325 -38.23807 -36.96450 -36.41475 -34.92395 -32.33012 -32.08381 -31.03053 -27.99575 -27.50999 -27.38443 -26.24269 -24.83640 -23.83999 -21.24969 -20.75476 -20.43599 -19.12867 -18.56619 -17.63205 -17.22739 -16.90112 -16.50976 -16.13737 -15.64417 -15.50887 -15.09046 -14.88450 -14.85990 -14.58238 -14.38491 -14.15524 -14.00361 -13.55905 -13.38919 -13.29175 -13.21107 -13.13803 -12.99426 -12.90345 -12.73001 -12.50381 -12.47681 -12.28891 -12.22629 -12.09091 -12.06519 -11.61518 -11.57621 -11.43507 -11.10178 -10.65471 -10.40519 -10.22825 -10.11113 -10.02416 -7.97060 -6.13245 -0.60097 -0.19027 0.31856 1.45640 1.48649 1.55903 2.04302 2.46934 2.50697 2.80058 3.26798 3.32879 3.60915 3.73332 3.93784 4.11649 4.25229 4.27315 4.33807 4.44731 4.46505 4.57823 4.76182 4.77373 4.80788 4.81907 4.88300 4.98087 4.98601 5.06894 5.09096 5.10359 5.13700 5.24705 5.25725 5.27660 5.31316 5.37808 5.53372 5.56793 5.72073 5.72489 5.86911 6.10429 6.20176 6.29665 6.48283 6.93540 7.54501 9.01890 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.003843 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.827676 B = 7283.596591 C = 8729.508756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.023 4.023 5 C -0.143 4.143 6 C -0.028 4.028 7 C -0.685 4.685 8 S 2.707 3.293 9 O -0.991 6.991 10 O -0.988 6.988 11 N -1.106 6.106 12 C 0.140 3.860 13 C 0.055 3.945 14 C -0.127 4.127 15 C -0.123 4.123 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.024 3.976 19 N -0.903 5.903 20 Si 0.945 3.055 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.269 1.269 24 C -0.033 4.033 25 C -0.141 4.141 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.420 0.580 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.026 0.974 42 H 0.058 0.942 43 H 0.034 0.966 44 H 0.258 0.742 45 H 0.138 0.862 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.044 -1.637 -16.989 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.204 4.204 4 C -0.023 4.023 5 C -0.162 4.162 6 C -0.047 4.047 7 C -0.775 4.775 8 S 2.800 3.200 9 O -0.981 6.981 10 O -0.979 6.979 11 N -0.868 5.868 12 C 0.014 3.986 13 C 0.053 3.947 14 C -0.185 4.185 15 C -0.181 4.181 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.542 5.542 20 Si 0.772 3.228 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.194 1.194 24 C -0.052 4.052 25 C -0.159 4.159 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.257 0.743 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.156 0.844 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.448 -2.202 -16.439 21.353 hybrid contribution 0.781 1.118 0.294 1.395 sum -12.667 -1.084 -16.145 20.550 Atomic orbital electron populations 1.21872 0.93057 1.02260 1.02989 1.20338 0.96903 0.96397 0.94296 1.21882 1.01037 0.94502 1.02958 1.20590 0.92596 0.93454 0.95687 1.21514 0.99047 0.96141 0.99486 1.21135 0.94911 0.97806 0.90881 1.30626 1.16130 1.13211 1.17504 1.01090 0.72532 0.72542 0.73851 1.93525 1.64557 1.84966 1.55086 1.93518 1.85059 1.35043 1.84261 1.55314 1.25588 1.22637 1.83255 1.21358 1.00380 0.78760 0.98105 1.18292 0.90014 0.94228 0.92195 1.21732 1.01341 0.96453 0.98999 1.21688 1.01788 0.97094 0.97568 1.21356 1.00961 0.95685 1.38278 0.92704 1.25508 0.95566 1.00579 0.95869 1.69940 1.05473 1.35822 1.42995 0.85762 0.76950 0.81589 0.78508 1.20832 1.21326 1.19397 1.21116 0.91932 0.91502 1.00689 1.21354 1.01703 1.01243 0.91615 0.92355 0.90551 0.92709 0.88663 0.92415 0.93116 0.90512 0.82487 0.83527 0.74286 0.92067 0.92146 0.95070 0.92149 0.96211 0.95441 0.92289 0.94761 0.93275 0.84397 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.01 71.98 0.65 -0.95 16 2 C -0.06 -0.78 3.09 -11.54 -0.04 -0.82 16 3 C -0.15 -1.85 9.01 71.98 0.65 -1.20 16 4 C -0.02 -0.43 4.78 -19.86 -0.09 -0.52 16 5 C -0.14 -2.79 9.67 22.27 0.22 -2.57 16 6 C -0.03 -0.67 9.52 22.27 0.21 -0.46 16 7 C -0.68 -19.07 5.95 22.27 0.13 -18.94 16 8 S 2.71 87.73 5.74 -56.49 -0.32 87.41 16 9 O -0.99 -37.70 16.75 -128.00 -2.14 -39.84 16 10 O -0.99 -34.64 17.28 -128.00 -2.21 -36.85 16 11 N -1.11 -37.12 5.33 -187.50 -1.00 -38.12 16 12 C 0.14 5.39 5.05 86.38 0.44 5.82 16 13 C 0.05 2.48 0.51 -52.93 -0.03 2.46 16 14 C -0.13 -5.93 8.08 71.98 0.58 -5.35 16 15 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 16 C -0.52 -26.76 8.01 25.60 0.21 -26.55 16 17 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 18 C 0.02 1.26 5.15 84.66 0.44 1.69 16 19 N -0.90 -48.54 9.35 21.45 0.20 -48.34 16 20 Si 0.94 41.82 29.54 68.60 2.03 43.85 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 C -0.03 -0.86 9.52 22.27 0.21 -0.65 16 25 C -0.14 -2.97 8.71 22.27 0.19 -2.77 16 26 H 0.06 0.67 7.39 -2.39 -0.02 0.65 16 27 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.98 7.88 -2.38 -0.02 0.96 16 30 H 0.06 0.76 7.39 -2.39 -0.02 0.74 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.16 2.08 7.95 -2.91 -0.02 2.06 16 34 H 0.15 3.17 7.62 -2.91 -0.02 3.15 16 35 H 0.42 13.36 6.47 -96.74 -0.63 12.74 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 2.40 7.75 -2.39 -0.02 2.38 16 38 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 39 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 2.93 6.07 -2.39 -0.01 2.92 16 43 H 0.03 1.29 6.60 -2.39 -0.02 1.27 16 44 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 45 H 0.14 3.57 7.62 -2.91 -0.02 3.55 16 46 H 0.15 2.46 7.10 -2.91 -0.02 2.44 16 Total: -1.00 -63.93 375.61 1.24 -62.69 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.34 Total: 24.87 kcal Atomic # 6 Polarization: -60.01 SS G_CDS: 4.35 Total: -55.66 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -0.80 Total: -86.46 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -4.36 Total: -76.69 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 87.73 SS G_CDS: -0.32 Total: 87.41 kcal Total: -63.93 1.24 -62.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416529718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.107 kcal (2) G-P(sol) polarization free energy of solvation -63.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds