Wall clock time and date at job start Tue Mar 31 2020 14:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47455 * 2 1 4 4 C 1.50703 * 109.47125 * 120.00497 * 2 1 3 5 5 C 1.38253 * 119.99704 * 294.24757 * 4 2 1 6 6 C 1.38216 * 120.00517 * 180.02562 * 5 4 2 7 7 C 1.38264 * 119.99244 * 359.94928 * 6 5 4 8 8 C 1.38209 * 120.00134 * 359.97438 * 7 6 5 9 9 C 1.38213 * 120.00287 * 114.41074 * 4 2 1 10 10 S 1.76196 * 120.00215 * 0.04540 * 9 4 2 11 11 O 1.42092 * 106.40357 * 177.52640 * 10 9 4 12 12 O 1.42103 * 106.40410 * 310.44789 * 10 9 4 13 13 N 1.65604 * 107.21662 * 63.98467 * 10 9 4 14 14 C 1.46507 * 119.99600 * 65.26633 * 13 10 9 15 15 C 1.52997 * 109.46783 * 164.35643 * 14 13 10 16 16 C 1.52999 * 109.47454 * 299.99921 * 15 14 13 17 17 C 1.53000 * 109.47307 * 59.99926 * 15 14 13 18 18 C 1.50700 * 109.47218 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99865 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00402 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99619 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00145 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47137 * 59.99967 * 22 20 18 24 24 H 1.48498 * 109.47226 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47018 * 299.99789 * 22 20 18 26 26 H 1.09005 * 109.46690 * 65.03773 * 1 2 3 27 27 H 1.08998 * 109.47495 * 185.03341 * 1 2 3 28 28 H 1.08997 * 109.47562 * 305.04118 * 1 2 3 29 29 H 1.09006 * 109.46943 * 239.99889 * 2 1 3 30 30 H 1.08995 * 109.47372 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47511 * 299.99875 * 3 2 1 32 32 H 1.09006 * 109.47136 * 60.00007 * 3 2 1 33 33 H 1.08008 * 120.00231 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.00541 * 179.97438 * 6 5 4 35 35 H 1.08004 * 119.99412 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.99773 * 180.02562 * 8 7 6 37 37 H 0.96998 * 119.99946 * 245.26099 * 13 10 9 38 38 H 1.08999 * 109.46509 * 284.35145 * 14 13 10 39 39 H 1.08991 * 109.47173 * 44.35520 * 14 13 10 40 40 H 1.09002 * 109.47414 * 59.99576 * 16 15 14 41 41 H 1.08997 * 109.47125 * 180.02562 * 16 15 14 42 42 H 1.09007 * 109.46831 * 300.00023 * 16 15 14 43 43 H 1.09005 * 109.47352 * 59.99717 * 17 15 14 44 44 H 1.08999 * 109.47312 * 179.97438 * 17 15 14 45 45 H 1.09000 * 109.47036 * 299.99681 * 17 15 14 46 46 H 0.97005 * 119.99755 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7991 -0.1730 2.4826 6 6 2.2602 -0.8242 3.6112 7 6 2.9538 -2.0139 3.4878 8 6 3.1856 -2.5521 2.2360 9 6 2.7291 -1.8978 1.1069 10 16 3.0311 -2.5801 -0.4893 11 8 3.8083 -3.7518 -0.2843 12 8 1.7819 -2.5847 -1.1667 13 7 4.0004 -1.5123 -1.3034 14 6 5.3646 -1.2569 -0.8340 15 6 6.1629 -0.5635 -1.9398 16 6 6.2091 -1.4632 -3.1764 17 6 5.4904 0.7630 -2.2992 18 6 7.5659 -0.3001 -1.4569 19 1 7.8590 -0.5980 -0.4610 20 6 8.4756 0.3201 -2.2867 21 7 8.1188 0.6823 -3.4996 22 14 10.2150 0.6458 -1.6883 23 1 10.8675 -0.6415 -1.3390 24 1 10.9898 1.3190 -2.7614 25 1 10.1701 1.5197 -0.4884 26 1 -0.3633 0.4337 -0.9317 27 1 -0.3634 -1.0237 0.0902 28 1 -0.3634 0.5900 0.8413 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.2573 0.7564 2.5791 34 1 2.0784 -0.4041 4.5894 35 1 3.3138 -2.5230 4.3696 36 1 3.7270 -3.4816 2.1397 37 1 3.6651 -1.0561 -2.0910 38 1 5.3315 -0.6158 0.0469 39 1 5.8436 -2.2018 -0.5780 40 1 5.1942 -1.6534 -3.5256 41 1 6.7782 -0.9694 -3.9640 42 1 6.6883 -2.4083 -2.9204 43 1 5.4574 1.4041 -1.4182 44 1 6.0593 1.2572 -3.0866 45 1 4.4755 0.5729 -2.6484 46 1 8.7590 1.1183 -4.0836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416530560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:37 Heat of formation + Delta-G solvation = -63.682131 kcal Electronic energy + Delta-G solvation = -27282.260232 eV Core-core repulsion = 23684.419816 eV Total energy + Delta-G solvation = -3597.840417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71300 -37.14825 -36.89833 -35.58158 -35.32834 -33.20586 -31.35183 -30.53607 -29.88874 -27.14052 -25.67920 -25.53249 -24.55488 -23.62277 -23.25053 -20.26336 -19.29938 -18.89287 -17.80958 -17.11622 -16.36838 -15.77813 -15.74005 -15.00145 -14.73805 -14.52288 -14.27388 -14.01656 -13.77760 -13.70941 -13.40403 -13.06296 -12.59079 -12.51395 -12.24350 -12.14842 -11.99480 -11.87947 -11.79443 -11.71660 -11.47130 -11.15818 -11.15094 -11.03327 -10.90124 -10.82695 -10.70444 -10.44808 -10.32711 -10.16157 -9.63770 -9.41587 -9.31840 -8.88091 -8.82348 -8.75916 -8.35708 -6.00421 -4.11074 0.62947 0.87866 1.23154 3.25976 3.29429 3.34434 3.37507 3.52046 3.99818 4.39545 4.42632 4.49611 4.74397 4.87695 4.98127 5.13425 5.16590 5.26074 5.29100 5.38428 5.61355 5.65319 5.77250 5.80543 5.81447 5.89184 5.98219 6.07222 6.14242 6.21224 6.27041 6.29415 6.34072 6.47719 6.51061 6.77758 6.78414 6.92606 7.02063 7.08010 7.36417 7.52275 7.60821 7.71300 8.05272 8.16682 8.41034 8.88851 9.54505 11.00588 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.004292 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.013233 B = 6521.527919 C = 6624.817851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C -0.146 4.146 4 C 0.032 3.968 5 C -0.140 4.140 6 C -0.067 4.067 7 C -0.148 4.148 8 C -0.019 4.019 9 C -0.671 4.671 10 S 2.690 3.310 11 O -0.964 6.964 12 O -0.968 6.968 13 N -1.106 6.106 14 C 0.130 3.870 15 C 0.065 3.935 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.508 4.508 19 H 0.056 0.944 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.416 0.584 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.010 0.990 41 H 0.084 0.916 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.008 0.992 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 -0.145 10.224 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C -0.203 4.203 4 C 0.031 3.969 5 C -0.158 4.158 6 C -0.085 4.085 7 C -0.167 4.167 8 C -0.038 4.038 9 C -0.757 4.757 10 S 2.779 3.221 11 O -0.954 6.954 12 O -0.958 6.958 13 N -0.869 5.869 14 C 0.005 3.995 15 C 0.063 3.937 16 C -0.190 4.190 17 C -0.188 4.188 18 C -0.547 4.547 19 H 0.074 0.926 20 C -0.134 4.134 21 N -0.522 5.522 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.204 1.204 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.160 0.840 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.029 0.971 41 H 0.102 0.898 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.104 0.896 45 H 0.027 0.973 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.559 -0.935 9.917 16.825 hybrid contribution 0.972 0.918 0.729 1.523 sum -12.587 -0.018 10.646 16.485 Atomic orbital electron populations 1.21761 0.93089 1.02579 1.01977 1.20564 0.97452 0.97223 0.94887 1.21894 1.02414 0.93867 1.02154 1.19546 0.90651 0.91013 0.95710 1.21075 1.02085 1.00733 0.91920 1.21404 0.94217 0.94233 0.98617 1.21241 1.00934 0.96966 0.97549 1.20980 0.93275 0.98169 0.91407 1.30932 1.13653 1.08336 1.22775 1.01937 0.73066 0.73580 0.73522 1.93548 1.70650 1.45060 1.86094 1.93571 1.42709 1.86699 1.72801 1.55480 1.25631 1.64488 1.41329 1.21649 0.78816 1.00235 0.98804 1.18244 0.93293 0.91607 0.90551 1.21821 0.97546 0.98573 1.01049 1.21824 0.96341 0.99194 1.01426 1.20965 0.94889 1.38778 1.00058 0.92567 1.24870 0.98377 0.95324 0.94848 1.69803 1.34693 1.40733 1.07019 0.86665 0.84605 0.78452 0.78280 1.20285 1.21366 1.20401 0.91714 0.91859 0.92673 0.89831 0.91327 0.91618 0.92471 0.85337 0.85536 0.85279 0.84017 0.74650 0.93151 0.91498 0.97120 0.89765 0.95368 0.95483 0.89646 0.97289 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.00 37.16 0.33 -1.19 16 2 C -0.08 -1.05 2.56 -91.78 -0.23 -1.29 16 3 C -0.15 -1.67 8.94 37.15 0.33 -1.34 16 4 C 0.03 0.43 4.78 -104.62 -0.50 -0.07 16 5 C -0.14 -1.58 8.84 -39.58 -0.35 -1.93 16 6 C -0.07 -0.69 10.05 -39.58 -0.40 -1.08 16 7 C -0.15 -1.65 10.05 -39.58 -0.40 -2.05 16 8 C -0.02 -0.26 9.55 -39.58 -0.38 -0.64 16 9 C -0.67 -9.93 5.88 -39.58 -0.23 -10.16 16 10 S 2.69 44.88 4.92 -107.50 -0.53 44.35 16 11 O -0.96 -18.48 16.42 -57.17 -0.94 -19.42 16 12 O -0.97 -17.09 16.04 -57.17 -0.92 -18.01 16 13 N -1.11 -18.83 4.55 -10.61 -0.05 -18.88 16 14 C 0.13 2.53 5.06 -4.04 -0.02 2.51 16 15 C 0.07 1.47 0.52 -155.66 -0.08 1.39 16 16 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 17 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 18 C -0.51 -12.91 8.01 -34.44 -0.28 -13.18 16 19 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.88 -23.29 9.35 55.43 0.52 -22.78 16 22 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.51 7.94 -51.93 -0.41 0.09 16 29 H 0.08 1.17 4.08 -51.83 -0.21 0.96 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.55 7.09 -51.93 -0.37 0.18 16 33 H 0.13 1.16 7.17 -52.48 -0.38 0.78 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.14 1.82 7.34 -52.49 -0.39 1.43 16 37 H 0.42 6.71 6.19 -34.47 -0.21 6.50 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.35 7.73 -51.93 -0.40 0.95 16 40 H 0.01 0.20 7.21 -51.93 -0.37 -0.17 16 41 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 42 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 2.08 6.07 -51.93 -0.32 1.76 16 45 H 0.01 0.16 6.59 -51.93 -0.34 -0.19 16 46 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -29.58 369.35 -10.12 -39.70 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.06 Total: 6.73 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: -1.69 Total: -32.63 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.47 Total: -41.65 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.86 Total: -37.42 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 44.88 SS G_CDS: -0.53 Total: 44.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.58 -10.12 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.979 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds