Wall clock time and date at job start Tue Mar 31 2020 14:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47455 * 2 1 4 4 C 1.50703 * 109.47125 * 120.00497 * 2 1 3 5 5 C 1.38253 * 119.99704 * 294.24757 * 4 2 1 6 6 C 1.38216 * 120.00517 * 180.02562 * 5 4 2 7 7 C 1.38264 * 119.99244 * 359.94928 * 6 5 4 8 8 C 1.38209 * 120.00134 * 359.97438 * 7 6 5 9 9 C 1.38213 * 120.00287 * 114.41074 * 4 2 1 10 10 S 1.76196 * 120.00215 * 0.04540 * 9 4 2 11 11 O 1.42092 * 106.40357 * 177.52640 * 10 9 4 12 12 O 1.42103 * 106.40410 * 310.44789 * 10 9 4 13 13 N 1.65604 * 107.21662 * 63.98467 * 10 9 4 14 14 C 1.46507 * 119.99600 * 65.26633 * 13 10 9 15 15 C 1.52997 * 109.46783 * 164.35643 * 14 13 10 16 16 C 1.52999 * 109.47454 * 299.99921 * 15 14 13 17 17 C 1.53000 * 109.47307 * 59.99926 * 15 14 13 18 18 C 1.50700 * 109.47218 * 179.97438 * 15 14 13 19 19 H 1.08002 * 119.99865 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00402 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99619 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00145 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47137 * 59.99967 * 22 20 18 24 24 H 1.48498 * 109.47226 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47018 * 299.99789 * 22 20 18 26 26 H 1.09005 * 109.46690 * 65.03773 * 1 2 3 27 27 H 1.08998 * 109.47495 * 185.03341 * 1 2 3 28 28 H 1.08997 * 109.47562 * 305.04118 * 1 2 3 29 29 H 1.09006 * 109.46943 * 239.99889 * 2 1 3 30 30 H 1.08995 * 109.47372 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47511 * 299.99875 * 3 2 1 32 32 H 1.09006 * 109.47136 * 60.00007 * 3 2 1 33 33 H 1.08008 * 120.00231 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.00541 * 179.97438 * 6 5 4 35 35 H 1.08004 * 119.99412 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.99773 * 180.02562 * 8 7 6 37 37 H 0.96998 * 119.99946 * 245.26099 * 13 10 9 38 38 H 1.08999 * 109.46509 * 284.35145 * 14 13 10 39 39 H 1.08991 * 109.47173 * 44.35520 * 14 13 10 40 40 H 1.09002 * 109.47414 * 59.99576 * 16 15 14 41 41 H 1.08997 * 109.47125 * 180.02562 * 16 15 14 42 42 H 1.09007 * 109.46831 * 300.00023 * 16 15 14 43 43 H 1.09005 * 109.47352 * 59.99717 * 17 15 14 44 44 H 1.08999 * 109.47312 * 179.97438 * 17 15 14 45 45 H 1.09000 * 109.47036 * 299.99681 * 17 15 14 46 46 H 0.97005 * 119.99755 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7991 -0.1730 2.4826 6 6 2.2602 -0.8242 3.6112 7 6 2.9538 -2.0139 3.4878 8 6 3.1856 -2.5521 2.2360 9 6 2.7291 -1.8978 1.1069 10 16 3.0311 -2.5801 -0.4893 11 8 3.8083 -3.7518 -0.2843 12 8 1.7819 -2.5847 -1.1667 13 7 4.0004 -1.5123 -1.3034 14 6 5.3646 -1.2569 -0.8340 15 6 6.1629 -0.5635 -1.9398 16 6 6.2091 -1.4632 -3.1764 17 6 5.4904 0.7630 -2.2992 18 6 7.5659 -0.3001 -1.4569 19 1 7.8590 -0.5980 -0.4610 20 6 8.4756 0.3201 -2.2867 21 7 8.1188 0.6823 -3.4996 22 14 10.2150 0.6458 -1.6883 23 1 10.8675 -0.6415 -1.3390 24 1 10.9898 1.3190 -2.7614 25 1 10.1701 1.5197 -0.4884 26 1 -0.3633 0.4337 -0.9317 27 1 -0.3634 -1.0237 0.0902 28 1 -0.3634 0.5900 0.8413 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.2573 0.7564 2.5791 34 1 2.0784 -0.4041 4.5894 35 1 3.3138 -2.5230 4.3696 36 1 3.7270 -3.4816 2.1397 37 1 3.6651 -1.0561 -2.0910 38 1 5.3315 -0.6158 0.0469 39 1 5.8436 -2.2018 -0.5780 40 1 5.1942 -1.6534 -3.5256 41 1 6.7782 -0.9694 -3.9640 42 1 6.6883 -2.4083 -2.9204 43 1 5.4574 1.4041 -1.4182 44 1 6.0593 1.2572 -3.0866 45 1 4.4755 0.5729 -2.6484 46 1 8.7590 1.1183 -4.0836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416530560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:37 Heat of formation + Delta-G solvation = -80.605318 kcal Electronic energy + Delta-G solvation = -27282.994077 eV Core-core repulsion = 23684.419816 eV Total energy + Delta-G solvation = -3598.574261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62842 -38.66903 -38.41056 -36.98353 -36.29163 -34.91352 -32.36272 -32.25145 -30.78148 -28.00132 -27.48465 -27.37998 -26.28041 -24.54066 -24.21858 -21.19336 -20.76212 -20.50310 -19.06205 -18.42530 -17.62569 -17.49926 -16.84709 -16.55705 -16.07560 -15.66340 -15.45269 -15.11069 -15.01128 -14.87885 -14.69059 -14.58284 -14.03105 -13.47577 -13.43950 -13.38869 -13.29208 -13.19899 -13.14274 -12.96772 -12.90707 -12.83618 -12.70062 -12.53738 -12.24482 -12.10347 -12.07215 -12.04120 -11.73310 -11.50121 -11.35113 -11.09925 -10.65618 -10.39363 -10.33888 -10.20325 -9.78422 -7.96390 -6.12385 -0.61026 -0.14061 0.33056 1.46819 1.48596 1.54288 2.01062 2.48748 2.51355 2.75881 3.27272 3.35845 3.52772 3.76364 3.98390 4.18256 4.22985 4.24871 4.35057 4.39121 4.45853 4.57286 4.75798 4.77563 4.81299 4.81931 4.87814 4.97642 5.01553 5.09907 5.12770 5.14374 5.16387 5.26078 5.28449 5.30059 5.41057 5.41504 5.45192 5.54859 5.72344 5.73759 5.91577 6.08726 6.21160 6.30383 6.49087 6.93598 7.55069 9.02152 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.004292 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.013233 B = 6521.527919 C = 6624.817851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.143 4.143 4 C 0.020 3.980 5 C -0.142 4.142 6 C -0.057 4.057 7 C -0.148 4.148 8 C -0.041 4.041 9 C -0.686 4.686 10 S 2.700 3.300 11 O -0.996 6.996 12 O -0.982 6.982 13 N -1.103 6.103 14 C 0.144 3.856 15 C 0.056 3.944 16 C -0.126 4.126 17 C -0.119 4.119 18 C -0.525 4.525 19 H 0.052 0.948 20 C 0.026 3.974 21 N -0.901 5.901 22 Si 0.944 3.056 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.273 1.273 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.420 0.580 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.029 0.971 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.028 0.972 44 H 0.057 0.943 45 H 0.033 0.967 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.592 1.156 12.647 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.200 4.200 4 C 0.018 3.982 5 C -0.160 4.160 6 C -0.075 4.075 7 C -0.167 4.167 8 C -0.061 4.061 9 C -0.776 4.776 10 S 2.793 3.207 11 O -0.987 6.987 12 O -0.972 6.972 13 N -0.866 5.866 14 C 0.018 3.982 15 C 0.054 3.946 16 C -0.184 4.184 17 C -0.177 4.177 18 C -0.563 4.563 19 H 0.070 0.930 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.257 0.743 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.755 0.348 12.296 19.210 hybrid contribution 1.282 0.511 0.055 1.381 sum -13.473 0.858 12.351 18.297 Atomic orbital electron populations 1.21774 0.91938 1.02150 1.03447 1.20630 0.98479 0.97694 0.94010 1.21882 1.01188 0.93302 1.03651 1.19748 0.90738 0.90660 0.97048 1.21448 1.01781 1.01616 0.91163 1.21903 0.92203 0.93299 1.00096 1.21619 1.00348 0.97367 0.97344 1.21152 0.94084 0.98498 0.92326 1.30464 1.16169 1.09839 1.21153 1.01303 0.72329 0.72946 0.74103 1.93500 1.71372 1.46995 1.86790 1.93546 1.42843 1.86896 1.73924 1.55317 1.24851 1.64428 1.42020 1.21306 0.79450 0.99403 0.97995 1.18278 0.92868 0.92282 0.91125 1.21722 0.98168 0.97800 1.00701 1.21649 0.97164 0.98335 1.00560 1.21298 0.96499 1.38597 0.99954 0.92996 1.25474 1.01289 0.95472 0.95082 1.69933 1.35338 1.41124 1.07614 0.85846 0.81124 0.78116 0.77860 1.20395 1.21361 1.19874 0.91017 0.93391 0.90307 0.91775 0.93151 0.90897 0.90270 0.82594 0.81662 0.82456 0.84485 0.74273 0.92254 0.92673 0.95161 0.92082 0.96463 0.95247 0.92364 0.94792 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.00 71.98 0.65 -2.11 16 2 C -0.09 -2.14 2.56 -11.54 -0.03 -2.17 16 3 C -0.14 -2.96 8.94 71.98 0.64 -2.32 16 4 C 0.02 0.49 4.78 -19.87 -0.09 0.39 16 5 C -0.14 -2.69 8.84 22.27 0.20 -2.49 16 6 C -0.06 -0.94 10.05 22.27 0.22 -0.71 16 7 C -0.15 -2.87 10.05 22.27 0.22 -2.64 16 8 C -0.04 -1.07 9.55 22.27 0.21 -0.86 16 9 C -0.69 -19.88 5.88 22.27 0.13 -19.75 16 10 S 2.70 91.56 4.92 -56.49 -0.28 91.28 16 11 O -1.00 -39.41 16.42 -128.00 -2.10 -41.51 16 12 O -0.98 -35.23 16.04 -128.00 -2.05 -37.28 16 13 N -1.10 -37.80 4.55 -187.49 -0.85 -38.66 16 14 C 0.14 5.66 5.06 86.38 0.44 6.09 16 15 C 0.06 2.56 0.52 -52.93 -0.03 2.53 16 16 C -0.13 -5.88 8.08 71.98 0.58 -5.30 16 17 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 18 C -0.52 -26.86 8.01 25.60 0.21 -26.66 16 19 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 20 C 0.03 1.37 5.15 84.65 0.44 1.81 16 21 N -0.90 -48.15 9.35 21.45 0.20 -47.95 16 22 Si 0.94 41.89 29.54 68.60 2.03 43.91 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.19 7.94 -2.39 -0.02 1.17 16 29 H 0.06 1.77 4.08 -2.45 -0.01 1.76 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.25 7.09 -2.38 -0.02 1.24 16 33 H 0.16 2.04 7.17 -2.91 -0.02 2.02 16 34 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.14 3.56 7.34 -2.91 -0.02 3.54 16 37 H 0.42 13.54 6.19 -96.75 -0.60 12.94 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 2.28 7.73 -2.39 -0.02 2.26 16 40 H 0.03 1.24 7.21 -2.39 -0.02 1.22 16 41 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 42 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.06 2.85 6.07 -2.39 -0.01 2.84 16 45 H 0.03 1.25 6.59 -2.39 -0.02 1.23 16 46 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 Total: -1.00 -64.25 369.35 1.69 -62.57 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.38 Total: 26.39 kcal Atomic # 6 Polarization: -63.12 SS G_CDS: 4.37 Total: -58.75 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -0.65 Total: -86.61 kcal Atomic # 8 Polarization: -74.64 SS G_CDS: -4.16 Total: -78.79 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 91.56 SS G_CDS: -0.28 Total: 91.28 kcal Total: -64.25 1.69 -62.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.039 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds