Wall clock time and date at job start Tue Mar 31 2020 14:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46808 * 2 1 4 4 C 1.50700 * 109.47179 * 120.00052 * 2 1 3 5 5 C 1.38556 * 119.79878 * 299.97940 * 4 2 1 6 6 C 1.37786 * 120.30128 * 179.76263 * 5 4 2 7 7 C 1.39731 * 119.90300 * 0.51350 * 6 5 4 8 8 C 1.47482 * 120.19510 * 179.76637 * 7 6 5 9 9 O 1.21599 * 120.00218 * 179.72173 * 8 7 6 10 10 N 1.34779 * 119.99991 * 359.72032 * 8 7 6 11 11 C 1.39124 * 120.00241 * 185.10174 * 10 8 7 12 12 C 1.39518 * 119.83764 * 34.47963 * 11 10 8 13 13 C 1.36355 * 120.16893 * 180.29552 * 12 11 10 14 14 C 1.40873 * 119.82961 * 359.45663 * 13 12 11 15 15 C 1.41137 * 120.16309 * 180.27149 * 14 13 12 16 16 H 1.08012 * 119.99911 * 25.64209 * 15 14 13 17 17 C 1.39908 * 120.00727 * 205.63813 * 15 14 13 18 18 N 1.30870 * 119.99504 * 16.83940 * 17 15 14 19 19 Si 1.86792 * 120.00650 * 196.83882 * 17 15 14 20 20 H 1.48497 * 109.47156 * 59.99785 * 19 17 15 21 21 H 1.48498 * 109.47419 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46865 * 300.00209 * 19 17 15 23 23 C 1.40882 * 119.68119 * 0.53834 * 14 13 12 24 24 C 1.36360 * 119.82660 * 359.73766 * 23 14 13 25 25 C 1.40169 * 119.61237 * 359.48770 * 7 6 5 26 26 O 1.35658 * 120.15177 * 180.23269 * 25 7 6 27 27 C 1.38057 * 119.80433 * 119.99820 * 4 2 1 28 28 H 1.08993 * 109.47236 * 300.00186 * 1 2 3 29 29 H 1.08994 * 109.47199 * 60.00436 * 1 2 3 30 30 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47100 * 239.99961 * 2 1 3 32 32 H 1.09002 * 109.47321 * 60.00096 * 3 2 1 33 33 H 1.09002 * 109.46961 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47460 * 299.99824 * 3 2 1 35 35 H 1.07996 * 119.85366 * 0.02562 * 5 4 2 36 36 H 1.07995 * 120.04762 * 180.25353 * 6 5 4 37 37 H 0.97005 * 119.99735 * 5.10758 * 10 8 7 38 38 H 1.08000 * 119.91113 * 0.02562 * 12 11 10 39 39 H 1.08007 * 120.08154 * 179.72321 * 13 12 11 40 40 H 0.97000 * 120.00418 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.08708 * 179.71364 * 23 14 13 42 42 H 1.07997 * 119.91738 * 179.97438 * 24 23 14 43 43 H 0.96698 * 113.99721 * 89.99757 * 26 25 7 44 44 H 1.08001 * 119.95961 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6955 -0.2332 2.4868 6 6 2.1450 -0.8775 3.6188 7 6 2.9533 -2.0112 3.5004 8 6 3.4423 -2.7028 4.7078 9 8 4.1413 -3.6920 4.6007 10 7 3.1145 -2.2384 5.9298 11 6 3.6608 -2.8254 7.0667 12 6 4.9652 -3.3194 7.0343 13 6 5.5052 -3.9014 8.1429 14 6 4.7465 -3.9930 9.3263 15 6 5.3005 -4.5889 10.4795 16 1 6.3714 -4.6000 10.6203 17 6 4.4628 -5.1652 11.4405 18 7 3.2218 -5.4515 11.1395 19 14 5.1155 -5.5259 13.1531 20 1 5.5707 -4.2619 13.7858 21 1 4.0377 -6.1307 13.9764 22 1 6.2568 -6.4713 13.0589 23 6 3.4301 -3.4919 9.3515 24 6 2.9014 -2.9176 8.2335 25 6 3.2917 -2.4907 2.2276 26 8 4.0719 -3.5931 2.1000 27 6 2.8258 -1.8325 1.0991 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.0742 0.6453 2.5794 36 1 1.8766 -0.5044 4.5960 37 1 2.4975 -1.4948 6.0166 38 1 5.5471 -3.2444 6.1276 39 1 6.5136 -4.2874 8.1149 40 1 2.6410 -5.8514 11.8055 41 1 2.8409 -3.5629 10.2539 42 1 1.8923 -2.5333 8.2511 43 1 3.5769 -4.4231 2.0635 44 1 3.0847 -2.1980 0.1163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436660290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:19 Heat of formation + Delta-G solvation = -42.847029 kcal Electronic energy + Delta-G solvation = -26056.461339 eV Core-core repulsion = 22324.080449 eV Total energy + Delta-G solvation = -3732.380890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52790 -39.03821 -37.51441 -36.94908 -35.05087 -34.36905 -32.94673 -30.84546 -29.73921 -29.52052 -28.65726 -27.49401 -25.32052 -23.93984 -22.85881 -21.77942 -20.96087 -20.50452 -19.65515 -18.05522 -17.44015 -17.20655 -16.59563 -15.95307 -15.45185 -15.22092 -14.94226 -14.63442 -14.35411 -14.17216 -13.90074 -13.77185 -13.61018 -13.00051 -12.95037 -12.66027 -12.59490 -12.20135 -12.08309 -11.98714 -11.82607 -11.54232 -11.43020 -11.30573 -11.09865 -11.07532 -11.01982 -10.74198 -10.59647 -9.97714 -9.57172 -9.34510 -9.10737 -9.04705 -8.86954 -8.69931 -7.53402 -6.96227 -6.73438 -4.29253 0.73098 1.11698 2.62976 3.01268 3.06410 3.09784 3.11519 3.26144 3.72057 3.84355 3.93365 4.09643 4.38341 4.46477 4.64070 4.75686 4.82770 4.88425 5.03403 5.12163 5.23491 5.27173 5.44442 5.47334 5.56872 5.67151 5.70826 5.74267 5.83214 5.88080 6.08602 6.16091 6.22012 6.31100 6.45356 6.57883 6.79008 6.96048 7.05059 7.20358 7.29992 7.60559 7.71278 7.74489 7.91159 8.04069 8.28818 8.30956 8.59834 8.79439 8.88681 9.01419 10.18119 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.002245 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.282379 B =12467.711114 C =12888.378759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.145 4.145 4 C -0.043 4.043 5 C -0.134 4.134 6 C -0.072 4.072 7 C -0.158 4.158 8 C 0.538 3.462 9 O -0.513 6.513 10 N -0.646 5.646 11 C -0.007 4.007 12 C -0.074 4.074 13 C -0.215 4.215 14 C 0.106 3.894 15 C -0.457 4.457 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.793 5.793 19 Si 0.910 3.090 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.154 4.154 24 C -0.113 4.113 25 C 0.169 3.831 26 O -0.477 6.477 27 C -0.156 4.156 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.392 0.608 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.281 0.719 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.395 0.605 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 11.069 -17.859 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.044 4.044 5 C -0.152 4.152 6 C -0.090 4.090 7 C -0.162 4.162 8 C 0.325 3.675 9 O -0.390 6.390 10 N -0.289 5.289 11 C -0.099 4.099 12 C -0.094 4.094 13 C -0.235 4.235 14 C 0.103 3.897 15 C -0.486 4.486 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.418 5.418 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.173 4.173 24 C -0.133 4.133 25 C 0.122 3.878 26 O -0.288 6.288 27 C -0.174 4.174 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.226 0.774 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.253 0.747 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.019 10.633 -17.833 21.917 hybrid contribution -0.518 -0.266 0.848 1.028 sum -7.537 10.367 -16.986 21.279 Atomic orbital electron populations 1.21864 0.94001 1.02216 1.02117 1.20193 0.96183 0.96228 0.95171 1.21868 1.01464 0.94808 1.02100 1.19868 0.95435 0.94163 0.94923 1.20868 1.01996 1.00870 0.91471 1.21256 0.94990 0.93624 0.99165 1.20595 1.02434 0.99131 0.94028 1.18031 0.82107 0.84460 0.82884 1.90804 1.37139 1.24826 1.86217 1.42903 1.46623 1.34646 1.04761 1.17129 0.94042 1.12212 0.86503 1.20258 0.92915 0.98686 0.97545 1.20658 1.00587 1.09020 0.93221 1.17664 0.91748 0.88770 0.91517 1.19533 0.94690 1.31885 1.02535 0.90378 1.25933 0.94509 0.93461 1.00477 1.69835 1.06668 1.30168 1.35157 0.86339 0.79398 0.79558 0.81268 1.18820 1.20366 1.18984 1.20892 0.97503 1.01466 0.97484 1.20222 0.97004 1.02476 0.93591 1.18473 0.89420 0.89500 0.90389 1.84745 1.33658 1.15148 1.95219 1.21302 0.99962 0.97725 0.98443 0.92224 0.92255 0.92403 0.90249 0.92230 0.92353 0.92241 0.85425 0.85224 0.77370 0.88060 0.88660 0.90807 0.86073 0.89212 0.74694 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.01 37.16 0.33 -0.53 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.69 16 3 C -0.15 -0.90 9.00 37.16 0.33 -0.57 16 4 C -0.04 -0.40 4.79 -104.57 -0.50 -0.90 16 5 C -0.13 -1.26 8.68 -39.63 -0.34 -1.60 16 6 C -0.07 -0.81 9.53 -39.19 -0.37 -1.19 16 7 C -0.16 -2.33 5.89 -104.85 -0.62 -2.95 16 8 C 0.54 10.18 7.48 -12.49 -0.09 10.09 16 9 O -0.51 -11.65 12.88 -16.60 -0.21 -11.86 16 10 N -0.65 -11.98 5.25 -10.69 -0.06 -12.03 16 11 C -0.01 -0.15 6.27 -83.60 -0.52 -0.68 16 12 C -0.07 -1.84 8.57 -39.78 -0.34 -2.18 16 13 C -0.21 -5.58 9.74 -39.26 -0.38 -5.96 16 14 C 0.11 2.87 5.57 -106.80 -0.59 2.27 16 15 C -0.46 -12.23 9.04 -37.86 -0.34 -12.57 16 16 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 17 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 18 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 19 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 C -0.15 -3.98 8.63 -39.26 -0.34 -4.32 16 24 C -0.11 -2.61 9.90 -39.78 -0.39 -3.01 16 25 C 0.17 2.33 6.72 -38.69 -0.26 2.07 16 26 O -0.48 -7.02 11.58 -40.55 -0.47 -7.49 16 27 C -0.16 -1.68 9.59 -39.48 -0.38 -2.06 16 28 H 0.06 0.34 7.37 -51.93 -0.38 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 32 H 0.06 0.36 7.37 -51.93 -0.38 -0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.13 0.90 7.07 -52.49 -0.37 0.53 16 36 H 0.13 1.22 6.42 -52.49 -0.34 0.88 16 37 H 0.39 5.73 6.86 -40.82 -0.28 5.45 16 38 H 0.10 2.51 6.47 -52.49 -0.34 2.17 16 39 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 40 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 41 H 0.12 3.20 6.18 -52.49 -0.32 2.87 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.40 4.36 9.06 45.56 0.41 4.77 16 44 H 0.13 1.18 7.93 -52.49 -0.42 0.76 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -32.18 365.65 -9.75 -41.93 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -4.91 Total: 13.21 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -5.19 Total: -22.99 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.55 Total: -31.96 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.68 Total: -19.35 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.18 -9.75 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436660290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.918 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds