Wall clock time and date at job start Tue Mar 31 2020 14:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46808 * 2 1 4 4 C 1.50700 * 109.47179 * 120.00052 * 2 1 3 5 5 C 1.38556 * 119.79878 * 299.97940 * 4 2 1 6 6 C 1.37786 * 120.30128 * 179.76263 * 5 4 2 7 7 C 1.39731 * 119.90300 * 0.51350 * 6 5 4 8 8 C 1.47482 * 120.19510 * 179.76637 * 7 6 5 9 9 O 1.21599 * 120.00218 * 179.72173 * 8 7 6 10 10 N 1.34779 * 119.99991 * 359.72032 * 8 7 6 11 11 C 1.39124 * 120.00241 * 185.10174 * 10 8 7 12 12 C 1.39518 * 119.83764 * 34.47963 * 11 10 8 13 13 C 1.36355 * 120.16893 * 180.29552 * 12 11 10 14 14 C 1.40873 * 119.82961 * 359.45663 * 13 12 11 15 15 C 1.41137 * 120.16309 * 180.27149 * 14 13 12 16 16 H 1.08012 * 119.99911 * 25.64209 * 15 14 13 17 17 C 1.39908 * 120.00727 * 205.63813 * 15 14 13 18 18 N 1.30870 * 119.99504 * 16.83940 * 17 15 14 19 19 Si 1.86792 * 120.00650 * 196.83882 * 17 15 14 20 20 H 1.48497 * 109.47156 * 59.99785 * 19 17 15 21 21 H 1.48498 * 109.47419 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46865 * 300.00209 * 19 17 15 23 23 C 1.40882 * 119.68119 * 0.53834 * 14 13 12 24 24 C 1.36360 * 119.82660 * 359.73766 * 23 14 13 25 25 C 1.40169 * 119.61237 * 359.48770 * 7 6 5 26 26 O 1.35658 * 120.15177 * 180.23269 * 25 7 6 27 27 C 1.38057 * 119.80433 * 119.99820 * 4 2 1 28 28 H 1.08993 * 109.47236 * 300.00186 * 1 2 3 29 29 H 1.08994 * 109.47199 * 60.00436 * 1 2 3 30 30 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47100 * 239.99961 * 2 1 3 32 32 H 1.09002 * 109.47321 * 60.00096 * 3 2 1 33 33 H 1.09002 * 109.46961 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47460 * 299.99824 * 3 2 1 35 35 H 1.07996 * 119.85366 * 0.02562 * 5 4 2 36 36 H 1.07995 * 120.04762 * 180.25353 * 6 5 4 37 37 H 0.97005 * 119.99735 * 5.10758 * 10 8 7 38 38 H 1.08000 * 119.91113 * 0.02562 * 12 11 10 39 39 H 1.08007 * 120.08154 * 179.72321 * 13 12 11 40 40 H 0.97000 * 120.00418 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.08708 * 179.71364 * 23 14 13 42 42 H 1.07997 * 119.91738 * 179.97438 * 24 23 14 43 43 H 0.96698 * 113.99721 * 89.99757 * 26 25 7 44 44 H 1.08001 * 119.95961 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6955 -0.2332 2.4868 6 6 2.1450 -0.8775 3.6188 7 6 2.9533 -2.0112 3.5004 8 6 3.4423 -2.7028 4.7078 9 8 4.1413 -3.6920 4.6007 10 7 3.1145 -2.2384 5.9298 11 6 3.6608 -2.8254 7.0667 12 6 4.9652 -3.3194 7.0343 13 6 5.5052 -3.9014 8.1429 14 6 4.7465 -3.9930 9.3263 15 6 5.3005 -4.5889 10.4795 16 1 6.3714 -4.6000 10.6203 17 6 4.4628 -5.1652 11.4405 18 7 3.2218 -5.4515 11.1395 19 14 5.1155 -5.5259 13.1531 20 1 5.5707 -4.2619 13.7858 21 1 4.0377 -6.1307 13.9764 22 1 6.2568 -6.4713 13.0589 23 6 3.4301 -3.4919 9.3515 24 6 2.9014 -2.9176 8.2335 25 6 3.2917 -2.4907 2.2276 26 8 4.0719 -3.5931 2.1000 27 6 2.8258 -1.8325 1.0991 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.0742 0.6453 2.5794 36 1 1.8766 -0.5044 4.5960 37 1 2.4975 -1.4948 6.0166 38 1 5.5471 -3.2444 6.1276 39 1 6.5136 -4.2874 8.1149 40 1 2.6410 -5.8514 11.8055 41 1 2.8409 -3.5629 10.2539 42 1 1.8923 -2.5333 8.2511 43 1 3.5769 -4.4231 2.0635 44 1 3.0847 -2.1980 0.1163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436660290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:18 Heat of formation + Delta-G solvation = -61.159837 kcal Electronic energy + Delta-G solvation = -26057.255442 eV Core-core repulsion = 22324.080449 eV Total energy + Delta-G solvation = -3733.174993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72010 -40.39255 -38.95705 -38.23033 -36.20242 -35.81378 -34.68935 -31.90590 -31.46005 -30.88284 -30.19954 -27.92729 -27.00678 -25.12284 -23.75544 -23.45643 -22.66423 -21.61976 -21.00370 -19.39997 -19.18760 -18.38260 -18.01672 -17.13364 -16.88740 -16.45408 -16.19540 -15.93462 -15.71609 -15.47542 -14.90713 -14.74912 -14.71913 -14.37758 -14.30528 -14.02194 -13.79323 -13.67301 -13.26158 -13.16888 -12.93542 -12.88269 -12.76625 -12.69146 -12.47855 -12.23513 -11.96960 -11.82774 -11.62842 -11.49340 -11.45729 -11.16129 -10.81401 -10.59791 -9.93636 -9.63693 -9.50253 -8.86513 -8.61505 -6.29310 -0.27293 0.25644 0.83840 1.11479 1.39024 1.48311 1.52194 1.92196 2.21105 2.28371 2.65564 2.78302 3.20017 3.60237 3.70064 3.75020 3.85913 4.11653 4.23343 4.33790 4.36827 4.39221 4.45200 4.46860 4.77597 4.84853 4.87850 4.89347 4.98326 5.05220 5.08397 5.12527 5.15850 5.20805 5.26629 5.32604 5.37773 5.41168 5.44599 5.59902 5.63494 5.77246 5.87698 6.00827 6.08026 6.34399 6.62207 6.69937 6.77270 6.90741 6.96467 7.36511 8.31962 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.002245 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.282379 B =12467.711114 C =12888.378759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.030 4.030 5 C -0.128 4.128 6 C -0.066 4.066 7 C -0.188 4.188 8 C 0.537 3.463 9 O -0.560 6.560 10 N -0.640 5.640 11 C 0.008 3.992 12 C -0.086 4.086 13 C -0.234 4.234 14 C 0.076 3.924 15 C -0.495 4.495 16 H 0.075 0.925 17 C 0.034 3.966 18 N -0.823 5.823 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.263 1.263 23 C -0.170 4.170 24 C -0.110 4.110 25 C 0.151 3.849 26 O -0.499 6.499 27 C -0.157 4.157 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.413 0.587 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.290 0.710 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.405 0.595 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 13.195 -18.945 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.030 4.030 5 C -0.146 4.146 6 C -0.084 4.084 7 C -0.192 4.192 8 C 0.328 3.672 9 O -0.440 6.440 10 N -0.285 5.285 11 C -0.086 4.086 12 C -0.106 4.106 13 C -0.254 4.254 14 C 0.073 3.927 15 C -0.524 4.524 16 H 0.093 0.907 17 C -0.181 4.181 18 N -0.449 5.449 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.187 1.187 23 C -0.190 4.190 24 C -0.130 4.130 25 C 0.105 3.895 26 O -0.312 6.312 27 C -0.176 4.176 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.252 0.748 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.264 0.736 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.126 12.795 -18.950 24.620 hybrid contribution 0.039 -0.833 0.922 1.243 sum -9.087 11.962 -18.028 23.467 Atomic orbital electron populations 1.21868 0.92930 1.02186 1.03124 1.20273 0.96930 0.96441 0.94016 1.21879 1.00909 0.94288 1.03159 1.20281 0.93508 0.93000 0.96228 1.21225 1.01417 1.01274 0.90643 1.21481 0.93679 0.92285 1.00984 1.20359 1.05489 1.01146 0.92212 1.18724 0.80820 0.83853 0.83846 1.90774 1.39201 1.27045 1.86945 1.42789 1.46905 1.35197 1.03606 1.17187 0.93191 1.10410 0.87802 1.20322 0.94062 0.99404 0.96846 1.20771 1.00837 1.10067 0.93719 1.17988 0.92767 0.89836 0.92116 1.19764 0.94994 1.33733 1.03901 0.90704 1.26791 0.94574 0.92545 1.04179 1.69873 1.07813 1.30456 1.36734 0.85194 0.78923 0.79486 0.75744 1.18247 1.18934 1.18695 1.20922 0.97267 1.02560 0.98260 1.20490 0.98394 1.01430 0.92658 1.18787 0.89995 0.89599 0.91125 1.84699 1.34998 1.16177 1.95339 1.21472 0.99946 0.97997 0.98152 0.91701 0.90877 0.92966 0.89566 0.91694 0.93268 0.90782 0.82218 0.83288 0.74841 0.88660 0.88863 0.89917 0.86888 0.85661 0.73607 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.01 71.98 0.65 -0.51 16 2 C -0.06 -0.59 3.09 -11.54 -0.04 -0.62 16 3 C -0.15 -1.27 9.00 71.98 0.65 -0.62 16 4 C -0.03 -0.46 4.79 -19.83 -0.09 -0.56 16 5 C -0.13 -1.94 8.68 22.24 0.19 -1.74 16 6 C -0.07 -1.32 9.53 22.52 0.21 -1.11 16 7 C -0.19 -5.42 5.89 -20.01 -0.12 -5.54 16 8 C 0.54 20.50 7.48 86.68 0.65 21.15 16 9 O -0.56 -26.37 12.88 16.89 0.22 -26.15 16 10 N -0.64 -23.30 5.25 -306.00 -1.61 -24.90 16 11 C 0.01 0.35 6.27 38.60 0.24 0.59 16 12 C -0.09 -4.44 8.57 22.14 0.19 -4.25 16 13 C -0.23 -12.78 9.74 22.48 0.22 -12.56 16 14 C 0.08 4.27 5.57 -21.28 -0.12 4.15 16 15 C -0.49 -27.51 9.04 23.39 0.21 -27.29 16 16 H 0.07 4.03 7.90 -2.90 -0.02 4.01 16 17 C 0.03 1.74 5.15 85.24 0.44 2.18 16 18 N -0.82 -43.31 10.95 21.82 0.24 -43.07 16 19 Si 0.99 38.53 29.59 68.60 2.03 40.56 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C -0.17 -9.03 8.63 22.48 0.19 -8.83 16 24 C -0.11 -5.06 9.90 22.14 0.22 -4.84 16 25 C 0.15 4.12 6.72 22.85 0.15 4.28 16 26 O -0.50 -15.20 11.58 -68.82 -0.80 -16.00 16 27 C -0.16 -3.11 9.59 22.34 0.21 -2.90 16 28 H 0.06 0.47 7.37 -2.39 -0.02 0.45 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.79 7.86 -2.39 -0.02 0.77 16 32 H 0.06 0.51 7.37 -2.39 -0.02 0.49 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.16 1.44 7.07 -2.91 -0.02 1.42 16 36 H 0.15 2.30 6.42 -2.91 -0.02 2.29 16 37 H 0.41 11.25 6.86 -92.70 -0.64 10.62 16 38 H 0.10 4.96 6.47 -2.91 -0.02 4.94 16 39 H 0.09 4.93 8.06 -2.91 -0.02 4.90 16 40 H 0.29 13.71 8.30 -92.71 -0.77 12.95 16 41 H 0.11 6.11 6.18 -2.91 -0.02 6.09 16 42 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.40 9.52 9.06 -74.06 -0.67 8.85 16 44 H 0.15 2.37 7.93 -2.91 -0.02 2.34 16 Total: -1.00 -73.17 365.65 3.90 -69.27 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.26 Total: 39.30 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 4.07 Total: -39.02 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.37 Total: -67.97 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.58 Total: -42.15 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -73.17 3.90 -69.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436660290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.114 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds