Wall clock time and date at job start Tue Mar 31 2020 14:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 C 1.53003 * 109.47220 * 175.75008 * 3 2 1 5 5 C 1.53001 * 109.90631 * 62.70285 * 4 3 2 6 6 F 1.39902 * 109.47376 * 293.58286 * 5 4 3 7 7 F 1.39907 * 109.47000 * 53.58185 * 5 4 3 8 8 F 1.39898 * 109.47056 * 173.57896 * 5 4 3 9 9 C 1.53993 * 109.91483 * 301.60649 * 4 3 2 10 10 C 1.54602 * 105.13811 * 241.87130 * 9 4 3 11 11 C 1.54931 * 103.08081 * 21.86576 * 10 9 4 12 12 N 1.47898 * 109.91907 * 184.01227 * 4 3 2 13 13 C 1.46893 * 111.00168 * 333.51039 * 12 4 3 14 14 C 1.53001 * 109.47444 * 189.99909 * 13 12 4 15 15 C 1.52995 * 109.47281 * 179.97438 * 14 13 12 16 16 S 1.81000 * 109.47158 * 179.97438 * 15 14 13 17 17 C 1.76201 * 100.00233 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99623 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99249 * 179.97438 * 19 17 16 21 21 Si 1.86790 * 120.00193 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47301 * 89.99874 * 21 19 17 23 23 H 1.48501 * 109.47271 * 209.99678 * 21 19 17 24 24 H 1.48498 * 109.47371 * 330.00072 * 21 19 17 25 25 H 1.08997 * 109.47041 * 299.99949 * 1 2 3 26 26 H 1.09005 * 109.46974 * 60.00031 * 1 2 3 27 27 H 1.08997 * 109.46797 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46855 * 240.00291 * 2 1 3 29 29 H 1.08998 * 109.47090 * 120.00283 * 2 1 3 30 30 H 1.08997 * 109.47248 * 55.74990 * 3 2 1 31 31 H 1.09001 * 109.47455 * 295.74743 * 3 2 1 32 32 H 1.09001 * 110.31281 * 122.95758 * 9 4 3 33 33 H 1.09002 * 110.31229 * 0.78466 * 9 4 3 34 34 H 1.09001 * 110.72347 * 140.31767 * 10 9 4 35 35 H 1.09004 * 110.71863 * 263.42079 * 10 9 4 36 36 H 1.08995 * 110.66816 * 81.11163 * 11 10 9 37 37 H 1.08999 * 110.66986 * 204.23933 * 11 10 9 38 38 H 1.09000 * 109.47123 * 310.00170 * 13 12 4 39 39 H 1.09000 * 109.47641 * 69.99834 * 13 12 4 40 40 H 1.08998 * 109.46953 * 299.99735 * 14 13 12 41 41 H 1.08999 * 109.47268 * 59.99537 * 14 13 12 42 42 H 1.08996 * 109.47517 * 299.99582 * 15 14 13 43 43 H 1.09005 * 109.47221 * 60.00416 * 15 14 13 44 44 H 0.97000 * 119.99256 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5663 1.4439 0.1069 5 6 4.1747 0.7532 -1.1153 6 9 3.8367 -0.6043 -1.1003 7 9 3.6769 1.3449 -2.2812 8 9 5.5668 0.8876 -1.0819 9 6 4.0028 0.7163 1.3920 10 6 4.7442 1.7842 2.2286 11 6 4.1983 3.1174 1.6586 12 7 4.0633 2.8334 0.2049 13 6 3.1300 3.7724 -0.4316 14 6 3.7843 5.1517 -0.5333 15 6 2.8125 6.1296 -1.1967 16 16 3.5862 7.7614 -1.3163 17 6 2.2854 8.6607 -2.0934 18 1 1.3589 8.1643 -2.3412 19 6 2.4516 10.0071 -2.3871 20 7 1.4799 10.6787 -2.9681 21 14 4.0540 10.8658 -1.9579 22 1 4.9962 10.7554 -3.1004 23 1 3.7869 12.2986 -1.6733 24 1 4.6527 10.2261 -0.7590 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6158 1.9778 0.8494 31 1 1.7402 1.9339 -0.9256 32 1 4.6738 -0.1082 1.1507 33 1 3.1310 0.3494 1.9338 34 1 4.4966 1.6864 3.2856 35 1 5.8214 1.7126 2.0780 36 1 3.2277 3.3535 2.0947 37 1 4.9061 3.9281 1.8312 38 1 2.8792 3.4147 -1.4302 39 1 2.2220 3.8443 0.1672 40 1 4.0350 5.5094 0.4654 41 1 4.6923 5.0799 -1.1320 42 1 2.5621 5.7718 -2.1954 43 1 1.9043 6.2015 -0.5982 44 1 1.5960 11.6197 -3.1730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441300452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:08 Heat of formation + Delta-G solvation = -169.603455 kcal Electronic energy + Delta-G solvation = -27044.712694 eV Core-core repulsion = 22900.422443 eV Total energy + Delta-G solvation = -4144.290250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.19983 -47.71683 -47.56029 -40.24249 -35.24165 -34.29937 -32.43494 -31.24522 -30.58123 -26.59301 -25.96901 -25.56275 -24.71704 -22.64104 -21.73212 -20.93485 -20.00527 -18.47300 -18.37641 -17.60537 -17.27862 -16.18221 -15.39595 -15.30826 -15.13200 -14.97714 -14.65452 -14.46166 -14.32419 -14.10107 -14.01815 -13.94630 -13.77553 -13.65123 -13.35238 -12.93479 -12.82661 -12.77197 -12.48759 -12.14643 -11.92898 -11.69615 -11.59118 -11.44411 -11.39816 -11.22749 -11.04804 -11.03274 -10.96108 -10.74598 -10.38890 -10.16210 -9.78404 -9.00114 -8.78681 -8.56012 -6.93803 -6.28172 -4.00300 2.55723 2.98671 3.30607 3.33515 3.45834 3.58915 3.68014 3.70600 4.13927 4.32091 4.38973 4.42236 4.43260 4.66472 4.70169 4.77480 4.81244 5.02536 5.07303 5.08694 5.11191 5.22750 5.26328 5.35396 5.41176 5.43550 5.48152 5.58061 5.59794 5.65838 5.71507 5.77883 5.83182 5.84800 5.92626 5.98427 6.16909 6.40847 6.49847 6.61248 6.75677 7.95700 8.44477 9.17856 10.81393 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.002965 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.418385 B = 9441.582543 C = 9768.771565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C -0.142 4.142 4 C 0.053 3.947 5 C 0.468 3.532 6 F -0.183 7.183 7 F -0.180 7.180 8 F -0.173 7.173 9 C -0.122 4.122 10 C -0.123 4.123 11 C 0.039 3.961 12 N -0.502 5.502 13 C 0.044 3.956 14 C -0.094 4.094 15 C -0.082 4.082 16 S -0.213 6.213 17 C -0.502 4.502 18 H 0.087 0.913 19 C 0.092 3.908 20 N -0.882 5.882 21 Si 0.862 3.138 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.238 1.238 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -24.643 10.647 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.181 4.181 4 C -0.040 4.040 5 C 0.413 3.587 6 F -0.165 7.165 7 F -0.161 7.161 8 F -0.154 7.154 9 C -0.159 4.159 10 C -0.161 4.161 11 C -0.088 4.088 12 N -0.225 5.225 13 C -0.085 4.085 14 C -0.133 4.133 15 C -0.231 4.231 16 S 0.015 5.985 17 C -0.650 4.650 18 H 0.105 0.895 19 C -0.116 4.116 20 N -0.519 5.519 21 Si 0.687 3.313 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.162 1.162 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.727 -24.033 10.592 26.686 hybrid contribution -1.401 0.092 -0.350 1.447 sum 3.325 -23.941 10.242 26.251 Atomic orbital electron populations 1.21750 0.95275 1.01777 1.02033 1.21896 0.96594 0.95710 1.03462 1.22327 0.92056 0.99115 1.04587 1.22846 0.95277 0.92845 0.92997 1.20334 0.76843 0.76459 0.85110 1.93105 1.91813 1.34788 1.96752 1.93169 1.87343 1.83614 1.52004 1.93181 1.30122 1.95507 1.96596 1.22549 1.01453 0.98528 0.93416 1.22519 1.01043 0.93428 0.99097 1.23332 1.00919 0.98455 0.86067 1.64565 1.45244 0.98777 1.13874 1.22539 0.93501 0.92732 0.99696 1.21269 0.98880 0.91490 1.01614 1.23004 1.00518 0.97097 1.02491 1.84162 1.28305 1.05194 1.80887 1.22130 1.01021 0.97390 1.44462 0.89451 1.24795 0.96960 0.96323 0.93569 1.69943 1.32179 1.09624 1.40170 0.86666 0.83753 0.79675 0.81231 1.19342 1.20127 1.16175 0.92751 0.92515 0.92544 0.90526 0.91316 0.89706 0.89684 0.90160 0.89302 0.90328 0.90162 0.92838 0.88683 0.90028 0.93511 0.91486 0.90587 0.91385 0.91584 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.14 -1.07 4.92 -26.73 -0.13 -1.20 16 3 C -0.14 -1.25 2.81 -26.73 -0.08 -1.32 16 4 C 0.05 0.51 0.26 -130.53 -0.03 0.48 16 5 C 0.47 5.34 2.17 37.16 0.08 5.42 16 6 F -0.18 -1.91 13.63 2.25 0.03 -1.88 16 7 F -0.18 -2.35 15.34 2.25 0.03 -2.31 16 8 F -0.17 -2.21 16.92 2.25 0.04 -2.17 16 9 C -0.12 -0.92 5.26 -25.37 -0.13 -1.05 16 10 C -0.12 -0.90 7.05 -24.87 -0.18 -1.08 16 11 C 0.04 0.36 5.92 -1.79 -0.01 0.35 16 12 N -0.50 -5.60 4.68 -214.84 -1.01 -6.60 16 13 C 0.04 0.55 3.58 -3.83 -0.01 0.54 16 14 C -0.09 -1.43 5.31 -26.73 -0.14 -1.57 16 15 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 16 S -0.21 -5.21 19.41 -107.50 -2.09 -7.30 16 17 C -0.50 -14.64 10.04 30.94 0.31 -14.32 16 18 H 0.09 2.71 8.03 -52.49 -0.42 2.28 16 19 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 20 N -0.88 -26.87 13.97 55.49 0.78 -26.10 16 21 Si 0.86 21.64 27.74 -169.99 -4.71 16.93 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.66 5.83 -51.93 -0.30 0.36 16 29 H 0.07 0.46 6.23 -51.93 -0.32 0.14 16 30 H 0.08 0.70 7.58 -51.93 -0.39 0.31 16 31 H 0.08 0.85 6.03 -51.93 -0.31 0.53 16 32 H 0.08 0.61 7.32 -51.93 -0.38 0.23 16 33 H 0.09 0.55 6.21 -51.93 -0.32 0.22 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.46 7.81 -51.93 -0.41 0.06 16 37 H 0.09 0.91 7.82 -51.93 -0.41 0.50 16 38 H 0.08 1.07 5.96 -51.93 -0.31 0.76 16 39 H 0.05 0.54 6.68 -51.93 -0.35 0.19 16 40 H 0.07 1.00 7.37 -51.93 -0.38 0.61 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 43 H 0.07 1.25 8.14 -51.91 -0.42 0.83 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -30.95 357.37 -8.23 -39.18 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.85 Total: -1.88 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 0.16 Total: -13.25 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: -0.23 Total: -32.70 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.10 Total: -6.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -2.09 Total: -7.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.95 -8.23 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441300452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.424 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds