Wall clock time and date at job start Tue Mar 31 2020 14:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 C 1.53003 * 109.47220 * 175.75008 * 3 2 1 5 5 C 1.53001 * 109.90631 * 62.70285 * 4 3 2 6 6 F 1.39902 * 109.47376 * 293.58286 * 5 4 3 7 7 F 1.39907 * 109.47000 * 53.58185 * 5 4 3 8 8 F 1.39898 * 109.47056 * 173.57896 * 5 4 3 9 9 C 1.53993 * 109.91483 * 301.60649 * 4 3 2 10 10 C 1.54602 * 105.13811 * 241.87130 * 9 4 3 11 11 C 1.54931 * 103.08081 * 21.86576 * 10 9 4 12 12 N 1.47898 * 109.91907 * 184.01227 * 4 3 2 13 13 C 1.46893 * 111.00168 * 333.51039 * 12 4 3 14 14 C 1.53001 * 109.47444 * 189.99909 * 13 12 4 15 15 C 1.52995 * 109.47281 * 179.97438 * 14 13 12 16 16 S 1.81000 * 109.47158 * 179.97438 * 15 14 13 17 17 C 1.76201 * 100.00233 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99623 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99793 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99249 * 179.97438 * 19 17 16 21 21 Si 1.86790 * 120.00193 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47301 * 89.99874 * 21 19 17 23 23 H 1.48501 * 109.47271 * 209.99678 * 21 19 17 24 24 H 1.48498 * 109.47371 * 330.00072 * 21 19 17 25 25 H 1.08997 * 109.47041 * 299.99949 * 1 2 3 26 26 H 1.09005 * 109.46974 * 60.00031 * 1 2 3 27 27 H 1.08997 * 109.46797 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46855 * 240.00291 * 2 1 3 29 29 H 1.08998 * 109.47090 * 120.00283 * 2 1 3 30 30 H 1.08997 * 109.47248 * 55.74990 * 3 2 1 31 31 H 1.09001 * 109.47455 * 295.74743 * 3 2 1 32 32 H 1.09001 * 110.31281 * 122.95758 * 9 4 3 33 33 H 1.09002 * 110.31229 * 0.78466 * 9 4 3 34 34 H 1.09001 * 110.72347 * 140.31767 * 10 9 4 35 35 H 1.09004 * 110.71863 * 263.42079 * 10 9 4 36 36 H 1.08995 * 110.66816 * 81.11163 * 11 10 9 37 37 H 1.08999 * 110.66986 * 204.23933 * 11 10 9 38 38 H 1.09000 * 109.47123 * 310.00170 * 13 12 4 39 39 H 1.09000 * 109.47641 * 69.99834 * 13 12 4 40 40 H 1.08998 * 109.46953 * 299.99735 * 14 13 12 41 41 H 1.08999 * 109.47268 * 59.99537 * 14 13 12 42 42 H 1.08996 * 109.47517 * 299.99582 * 15 14 13 43 43 H 1.09005 * 109.47221 * 60.00416 * 15 14 13 44 44 H 0.97000 * 119.99256 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5663 1.4439 0.1069 5 6 4.1747 0.7532 -1.1153 6 9 3.8367 -0.6043 -1.1003 7 9 3.6769 1.3449 -2.2812 8 9 5.5668 0.8876 -1.0819 9 6 4.0028 0.7163 1.3920 10 6 4.7442 1.7842 2.2286 11 6 4.1983 3.1174 1.6586 12 7 4.0633 2.8334 0.2049 13 6 3.1300 3.7724 -0.4316 14 6 3.7843 5.1517 -0.5333 15 6 2.8125 6.1296 -1.1967 16 16 3.5862 7.7614 -1.3163 17 6 2.2854 8.6607 -2.0934 18 1 1.3589 8.1643 -2.3412 19 6 2.4516 10.0071 -2.3871 20 7 1.4799 10.6787 -2.9681 21 14 4.0540 10.8658 -1.9579 22 1 4.9962 10.7554 -3.1004 23 1 3.7869 12.2986 -1.6733 24 1 4.6527 10.2261 -0.7590 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6158 1.9778 0.8494 31 1 1.7402 1.9339 -0.9256 32 1 4.6738 -0.1082 1.1507 33 1 3.1310 0.3494 1.9338 34 1 4.4966 1.6864 3.2856 35 1 5.8214 1.7126 2.0780 36 1 3.2277 3.3535 2.0947 37 1 4.9061 3.9281 1.8312 38 1 2.8792 3.4147 -1.4302 39 1 2.2220 3.8443 0.1672 40 1 4.0350 5.5094 0.4654 41 1 4.6923 5.0799 -1.1320 42 1 2.5621 5.7718 -2.1954 43 1 1.9043 6.2015 -0.5982 44 1 1.5960 11.6197 -3.1730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441300452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:07 Heat of formation + Delta-G solvation = -187.251207 kcal Electronic energy + Delta-G solvation = -27045.477958 eV Core-core repulsion = 22900.422443 eV Total energy + Delta-G solvation = -4145.055514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.10852 -48.61617 -48.51793 -41.00699 -36.13389 -35.16048 -34.68927 -32.12284 -31.40367 -28.00525 -27.32496 -26.69456 -25.72806 -23.43966 -22.55755 -21.81722 -20.88926 -19.62832 -19.37814 -19.25999 -18.21925 -17.13113 -16.98389 -16.48252 -16.19549 -15.90768 -15.81904 -15.49332 -15.37846 -15.05716 -14.95096 -14.93943 -14.81914 -14.72066 -14.53850 -14.23676 -13.87205 -13.58143 -13.46219 -13.40548 -13.09813 -13.01214 -12.90798 -12.49611 -12.42634 -12.18312 -12.10299 -12.02374 -11.82852 -11.66410 -11.65333 -11.57439 -11.30485 -11.16716 -10.57283 -9.61122 -8.99591 -8.52542 -6.23750 1.11631 1.32144 1.47356 1.68887 1.76132 2.24490 2.51512 2.68740 2.83661 2.85726 2.93081 3.37472 3.58493 3.63305 3.74143 3.95403 4.03097 4.05824 4.16366 4.22190 4.26825 4.37146 4.43926 4.45580 4.62761 4.66848 4.72210 4.75972 4.80695 4.83591 4.90537 4.99467 5.09064 5.09707 5.19753 5.23993 5.25098 5.25830 5.40770 5.67829 5.69319 5.84261 6.09429 6.91671 8.60684 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.002965 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.418385 B = 9441.582543 C = 9768.771565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C -0.139 4.139 4 C 0.056 3.944 5 C 0.460 3.540 6 F -0.178 7.178 7 F -0.194 7.194 8 F -0.183 7.183 9 C -0.119 4.119 10 C -0.116 4.116 11 C 0.035 3.965 12 N -0.517 5.517 13 C 0.056 3.944 14 C -0.081 4.081 15 C -0.069 4.069 16 S -0.218 6.218 17 C -0.523 4.523 18 H 0.050 0.950 19 C 0.038 3.962 20 N -0.923 5.923 21 Si 0.926 3.074 22 H -0.263 1.263 23 H -0.262 1.262 24 H -0.228 1.228 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -25.841 12.807 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.178 4.178 4 C -0.036 4.036 5 C 0.405 3.595 6 F -0.159 7.159 7 F -0.175 7.175 8 F -0.165 7.165 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.092 4.092 12 N -0.241 5.241 13 C -0.074 4.074 14 C -0.120 4.120 15 C -0.218 4.218 16 S 0.010 5.990 17 C -0.671 4.671 18 H 0.068 0.932 19 C -0.166 4.166 20 N -0.561 5.561 21 Si 0.747 3.253 22 H -0.188 1.188 23 H -0.186 1.186 24 H -0.151 1.151 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.678 -25.245 12.756 28.849 hybrid contribution -1.761 0.342 -1.064 2.086 sum 3.917 -24.902 11.692 27.788 Atomic orbital electron populations 1.21747 0.94892 1.02275 1.01873 1.21867 0.96879 0.94918 1.03622 1.22309 0.91381 0.99876 1.04221 1.22920 0.95621 0.91988 0.93057 1.20744 0.76437 0.76883 0.85407 1.93113 1.91702 1.34368 1.96726 1.93140 1.87461 1.83909 1.53033 1.93156 1.31080 1.95601 1.96641 1.22614 1.02362 0.98362 0.92315 1.22511 1.00592 0.91994 1.00278 1.23431 1.01465 0.99454 0.84823 1.64450 1.45039 0.99252 1.15322 1.22307 0.93911 0.91319 0.99846 1.21133 0.97455 0.92157 1.01232 1.23056 1.01308 0.94657 1.02768 1.83850 1.27174 1.07904 1.80083 1.22350 1.01355 0.98292 1.45069 0.93191 1.25777 1.00579 0.97021 0.93258 1.70043 1.34430 1.10358 1.41255 0.85713 0.79198 0.79031 0.81403 1.18790 1.18642 1.15098 0.92075 0.93518 0.91756 0.91719 0.89746 0.88608 0.91277 0.90078 0.87241 0.87938 0.90709 0.91864 0.89184 0.91014 0.92237 0.90590 0.91601 0.92075 0.91251 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.14 -1.81 4.92 30.60 0.15 -1.66 16 3 C -0.14 -2.19 2.81 30.59 0.09 -2.11 16 4 C 0.06 0.99 0.26 3.67 0.00 0.99 16 5 C 0.46 10.12 2.17 71.98 0.16 10.28 16 6 F -0.18 -3.51 13.63 44.97 0.61 -2.90 16 7 F -0.19 -5.07 15.34 44.97 0.69 -4.38 16 8 F -0.18 -4.57 16.92 44.97 0.76 -3.81 16 9 C -0.12 -1.45 5.26 31.48 0.17 -1.29 16 10 C -0.12 -1.34 7.05 31.80 0.22 -1.12 16 11 C 0.03 0.55 5.92 86.61 0.51 1.06 16 12 N -0.52 -10.67 4.68 -833.61 -3.90 -14.58 16 13 C 0.06 1.31 3.58 86.30 0.31 1.62 16 14 C -0.08 -2.37 5.31 30.59 0.16 -2.21 16 15 C -0.07 -2.62 5.67 71.98 0.41 -2.22 16 16 S -0.22 -10.57 19.41 -56.49 -1.10 -11.66 16 17 C -0.52 -31.13 10.04 67.95 0.68 -30.45 16 18 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 19 C 0.04 2.27 5.50 84.86 0.47 2.73 16 20 N -0.92 -57.21 13.97 21.65 0.30 -56.90 16 21 Si 0.93 44.41 27.74 68.60 1.90 46.31 16 22 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.23 -10.47 6.74 99.48 0.67 -9.80 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 1.04 5.83 -2.38 -0.01 1.02 16 29 H 0.08 0.87 6.23 -2.39 -0.01 0.86 16 30 H 0.10 1.31 7.58 -2.39 -0.02 1.29 16 31 H 0.07 1.32 6.03 -2.39 -0.01 1.31 16 32 H 0.08 1.01 7.32 -2.39 -0.02 1.00 16 33 H 0.11 0.90 6.21 -2.39 -0.01 0.89 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.06 0.89 7.81 -2.39 -0.02 0.87 16 37 H 0.09 1.52 7.82 -2.39 -0.02 1.50 16 38 H 0.07 1.85 5.96 -2.39 -0.01 1.84 16 39 H 0.06 1.26 6.68 -2.39 -0.02 1.24 16 40 H 0.08 2.11 7.37 -2.39 -0.02 2.10 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -67.46 357.37 4.26 -63.19 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.96 Total: 10.26 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 4.04 Total: -25.54 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -3.60 Total: -71.48 kcal Atomic # 9 Polarization: -13.15 SS G_CDS: 2.06 Total: -11.09 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.31 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.10 Total: -11.66 kcal Total: -67.46 4.26 -63.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441300452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.058 kcal (2) G-P(sol) polarization free energy of solvation -67.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds