Wall clock time and date at job start Tue Mar 31 2020 14:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.52996 * 109.47146 * 185.62840 * 3 2 1 5 5 C 1.52999 * 110.01193 * 301.27245 * 4 3 2 6 6 F 1.39908 * 109.46639 * 298.69865 * 5 4 3 7 7 F 1.39896 * 109.47553 * 58.69855 * 5 4 3 8 8 F 1.39896 * 109.47175 * 178.70380 * 5 4 3 9 9 C 1.54321 * 109.88936 * 62.38444 * 4 3 2 10 10 C 1.55141 * 103.01971 * 97.11902 * 9 4 3 11 11 C 1.54902 * 101.65008 * 35.65619 * 10 9 4 12 12 N 1.47445 * 109.88895 * 180.15012 * 4 3 2 13 13 C 1.46901 * 110.99614 * 117.33662 * 12 4 3 14 14 C 1.52998 * 109.46994 * 176.64021 * 13 12 4 15 15 C 1.53004 * 109.47336 * 180.02562 * 14 13 12 16 16 S 1.80998 * 109.47021 * 179.97438 * 15 14 13 17 17 C 1.76201 * 99.99784 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00175 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00273 * 179.97438 * 17 16 15 20 20 N 1.31637 * 119.99870 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00407 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47440 * 89.99864 * 21 19 17 23 23 H 1.48502 * 109.47345 * 210.00312 * 21 19 17 24 24 H 1.48509 * 109.46926 * 329.99969 * 21 19 17 25 25 H 1.08998 * 109.47631 * 300.00052 * 1 2 3 26 26 H 1.09001 * 109.47072 * 60.00538 * 1 2 3 27 27 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47631 * 239.99948 * 2 1 3 29 29 H 1.09001 * 109.47072 * 119.99462 * 2 1 3 30 30 H 1.08998 * 109.46794 * 65.62837 * 3 2 1 31 31 H 1.08996 * 109.46588 * 305.62965 * 3 2 1 32 32 H 1.09003 * 110.70863 * 215.50747 * 9 4 3 33 33 H 1.09005 * 110.70151 * 338.56168 * 9 4 3 34 34 H 1.09000 * 110.98997 * 153.74917 * 10 9 4 35 35 H 1.09001 * 110.99066 * 277.52550 * 10 9 4 36 36 H 1.08999 * 110.37294 * 204.09974 * 11 10 9 37 37 H 1.09000 * 110.37752 * 81.75707 * 11 10 9 38 38 H 1.08999 * 109.47531 * 296.63997 * 13 12 4 39 39 H 1.09001 * 109.47161 * 56.63893 * 13 12 4 40 40 H 1.09007 * 109.46938 * 299.99984 * 14 13 12 41 41 H 1.09001 * 109.47271 * 59.99940 * 14 13 12 42 42 H 1.09001 * 109.46332 * 299.99672 * 15 14 13 43 43 H 1.08999 * 109.46815 * 59.99694 * 15 14 13 44 44 H 0.96994 * 119.99818 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5634 1.4449 -0.1415 5 6 4.1972 0.6597 1.0085 6 9 3.8717 1.2697 2.2248 7 9 3.7122 -0.6525 1.0005 8 9 5.5873 0.6440 0.8521 9 6 3.9662 0.8155 -1.4917 10 6 4.1758 2.0519 -2.4050 11 6 4.7772 3.0766 -1.4112 12 7 4.0652 2.8313 -0.1389 13 6 4.9464 3.0700 1.0120 14 6 5.5124 4.4894 0.9352 15 6 6.4307 4.7379 2.1335 16 16 7.1009 6.4167 2.0422 17 6 8.0910 6.4306 3.4996 18 1 8.1357 5.5550 4.1305 19 6 8.8142 7.5663 3.8365 20 7 8.7609 8.6329 3.0669 21 14 9.8644 7.5808 5.3812 22 1 11.2337 7.1086 5.0535 23 1 9.9332 8.9629 5.9202 24 1 9.2612 6.6824 6.3984 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7612 1.9264 0.9361 31 1 1.5966 1.9846 -0.8353 32 1 4.8919 0.2487 -1.3918 33 1 3.1669 0.1810 -1.8748 34 1 4.8777 1.8291 -3.2087 35 1 3.2263 2.4067 -2.8059 36 1 4.5947 4.0937 -1.7581 37 1 5.8461 2.9030 -1.2874 38 1 4.3779 2.9551 1.9349 39 1 5.7654 2.3509 0.9979 40 1 6.0810 4.6043 0.0123 41 1 4.6934 5.2085 0.9493 42 1 5.8624 4.6228 3.0566 43 1 7.2496 4.0187 2.1189 44 1 9.2666 9.4264 3.3022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441300456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:11 Heat of formation + Delta-G solvation = -146.131416 kcal Electronic energy + Delta-G solvation = -27242.245779 eV Core-core repulsion = 23098.973352 eV Total energy + Delta-G solvation = -4143.272426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.60925 -48.03886 -47.86519 -39.90449 -35.53977 -33.88714 -32.40644 -31.18459 -30.40591 -26.58364 -25.88417 -25.45991 -24.63138 -22.54528 -21.94277 -20.69746 -20.18951 -18.67501 -18.55685 -17.42977 -17.26972 -16.24498 -15.78631 -15.40352 -15.19698 -14.78287 -14.64312 -14.46211 -14.33567 -14.25662 -14.14914 -13.95591 -13.77662 -13.52173 -13.20641 -12.91423 -12.77140 -12.60113 -12.45092 -12.03963 -11.71511 -11.56059 -11.36874 -11.18003 -11.16752 -11.05466 -11.01705 -10.96324 -10.74297 -10.59405 -10.55240 -10.24414 -9.50248 -9.03449 -8.55018 -8.27732 -6.49963 -6.20521 -3.90341 2.48698 3.20902 3.23677 3.29312 3.32658 3.49708 3.61988 3.76182 4.01695 4.24816 4.29249 4.33959 4.62545 4.72323 4.79446 4.86788 5.08596 5.15445 5.18334 5.24652 5.28338 5.36823 5.41232 5.44542 5.49697 5.56071 5.61917 5.65279 5.77330 5.79990 5.82579 5.87260 5.94419 5.96025 6.08523 6.14385 6.33480 6.58773 6.65834 6.74937 6.87808 7.63222 8.39373 9.25895 10.87729 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.002877 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.734012 B = 9731.245390 C =10156.128513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C -0.098 4.098 4 C 0.065 3.935 5 C 0.440 3.560 6 F -0.171 7.171 7 F -0.176 7.176 8 F -0.176 7.176 9 C -0.138 4.138 10 C -0.124 4.124 11 C 0.037 3.963 12 N -0.501 5.501 13 C -0.019 4.019 14 C -0.088 4.088 15 C -0.112 4.112 16 S -0.132 6.132 17 C -0.515 4.515 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.870 5.870 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 -19.120 -10.776 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C -0.136 4.136 4 C -0.027 4.027 5 C 0.384 3.616 6 F -0.152 7.152 7 F -0.158 7.158 8 F -0.157 7.157 9 C -0.176 4.176 10 C -0.162 4.162 11 C -0.091 4.091 12 N -0.224 5.224 13 C -0.147 4.147 14 C -0.127 4.127 15 C -0.261 4.261 16 S 0.097 5.903 17 C -0.663 4.663 18 H 0.090 0.910 19 C -0.138 4.138 20 N -0.506 5.506 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.930 -17.755 -11.483 25.884 hybrid contribution 1.794 -1.509 2.168 3.194 sum -13.136 -19.264 -9.315 25.108 Atomic orbital electron populations 1.21736 0.95419 1.01586 1.01925 1.22163 0.96534 0.96428 1.03683 1.21591 0.89839 0.97535 1.04628 1.23186 0.98191 0.89323 0.92013 1.21291 0.76585 0.78483 0.85192 1.93103 1.92399 1.81824 1.47904 1.93088 1.86870 1.39064 1.96741 1.93034 1.31476 1.95600 1.95617 1.22991 1.02880 0.98843 0.92921 1.22694 1.02045 0.94015 0.97447 1.23211 0.97038 1.00628 0.88176 1.63874 1.37543 1.17279 1.03705 1.23852 0.96571 0.99960 0.94330 1.21231 0.98736 0.94576 0.98168 1.23215 1.00455 1.02875 0.99536 1.84583 1.59023 1.10528 1.36216 1.22697 1.31684 1.02524 1.09422 0.90988 1.25013 0.96466 0.94686 0.97649 1.70026 1.40210 1.03174 1.37198 0.86171 0.80082 0.77550 0.81763 1.20301 1.20751 1.19673 0.92614 0.92765 0.92735 0.91469 0.90065 0.90293 0.89324 0.90403 0.88856 0.90075 0.90120 0.88902 0.92490 0.87951 0.91320 0.91733 0.90865 0.92082 0.92374 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.15 -1.15 4.75 -26.73 -0.13 -1.27 16 3 C -0.10 -0.86 4.48 -26.73 -0.12 -0.98 16 4 C 0.06 0.66 0.56 -130.61 -0.07 0.58 16 5 C 0.44 5.14 1.81 37.16 0.07 5.21 16 6 F -0.17 -2.25 13.64 2.25 0.03 -2.22 16 7 F -0.18 -1.89 13.43 2.25 0.03 -1.86 16 8 F -0.18 -2.29 13.50 2.25 0.03 -2.26 16 9 C -0.14 -1.13 5.52 -24.91 -0.14 -1.26 16 10 C -0.12 -0.97 7.08 -24.59 -0.17 -1.14 16 11 C 0.04 0.39 5.34 -2.30 -0.01 0.38 16 12 N -0.50 -6.00 4.89 -215.76 -1.06 -7.06 16 13 C -0.02 -0.28 3.54 -3.82 -0.01 -0.29 16 14 C -0.09 -1.50 5.03 -26.73 -0.13 -1.63 16 15 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 16 S -0.13 -3.51 21.44 -107.50 -2.30 -5.82 16 17 C -0.51 -15.06 9.50 30.94 0.29 -14.77 16 18 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 19 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 20 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 21 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.46 6.08 -51.93 -0.32 0.14 16 29 H 0.08 0.70 5.58 -51.93 -0.29 0.41 16 30 H 0.08 0.79 7.90 -51.93 -0.41 0.37 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.67 7.27 -51.93 -0.38 0.29 16 33 H 0.09 0.61 5.90 -51.93 -0.31 0.30 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.66 7.42 -51.93 -0.39 0.27 16 38 H 0.10 1.54 5.56 -51.93 -0.29 1.25 16 39 H 0.07 1.03 4.89 -51.93 -0.25 0.77 16 40 H 0.06 1.08 6.84 -51.93 -0.36 0.72 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 43 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -31.10 354.67 -8.91 -40.02 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.75 Total: -1.42 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 0.05 Total: -16.00 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: -0.32 Total: -32.64 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.09 Total: -6.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.10 -8.91 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441300456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.112 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds