Wall clock time and date at job start Tue Mar 31 2020 14:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46909 * 2 1 4 4 C 1.50707 * 109.47259 * 180.02562 * 3 2 1 5 5 S 1.70619 * 124.51171 * 270.02551 * 4 3 2 6 6 C 1.75828 * 91.56423 * 179.97438 * 5 4 3 7 7 C 1.46465 * 125.46019 * 179.97438 * 6 5 4 8 8 O 1.21740 * 120.00172 * 186.75270 * 7 6 5 9 9 N 1.34780 * 119.99854 * 6.76007 * 7 6 5 10 10 C 1.36880 * 120.00063 * 356.09352 * 9 7 6 11 11 H 1.07998 * 120.00069 * 49.32477 * 10 9 7 12 12 C 1.39009 * 119.99697 * 229.05216 * 10 9 7 13 13 N 1.31391 * 120.00030 * 6.44222 * 12 10 9 14 14 Si 1.86803 * 119.99672 * 186.44029 * 12 10 9 15 15 H 1.48496 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47006 * 120.00123 * 14 12 10 17 17 H 1.48494 * 109.47139 * 239.99833 * 14 12 10 18 18 C 1.46498 * 119.99861 * 176.09056 * 9 7 6 19 19 C 1.53000 * 109.47451 * 273.51584 * 18 9 7 20 20 O 1.42898 * 109.46780 * 64.99865 * 19 18 9 21 21 C 1.42906 * 113.99505 * 180.02562 * 20 19 18 22 22 C 1.36767 * 109.08029 * 0.26440 * 6 5 4 23 23 C 1.33842 * 124.51794 * 89.97896 * 4 3 2 24 24 C 1.50705 * 122.44394 * 0.02562 * 23 4 3 25 25 C 1.52998 * 109.47115 * 84.99875 * 24 23 4 26 26 H 1.08992 * 109.47361 * 59.99712 * 1 2 3 27 27 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47298 * 299.99824 * 1 2 3 29 29 H 1.09001 * 109.47298 * 240.00176 * 2 1 3 30 30 H 1.08999 * 109.47603 * 119.99639 * 2 1 3 31 31 H 1.09001 * 109.47731 * 60.00099 * 3 2 1 32 32 H 1.09004 * 109.47312 * 299.99875 * 3 2 1 33 33 H 0.97005 * 120.00264 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46699 * 33.51765 * 18 9 7 35 35 H 1.09000 * 109.47167 * 153.51014 * 18 9 7 36 36 H 1.08996 * 109.47235 * 184.99620 * 19 18 9 37 37 H 1.09000 * 109.46931 * 305.00226 * 19 18 9 38 38 H 1.09000 * 109.46892 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47155 * 299.99828 * 21 20 19 40 40 H 1.08991 * 109.47236 * 60.00614 * 21 20 19 41 41 H 1.07997 * 123.36193 * 179.69770 * 22 6 5 42 42 H 1.09000 * 109.46647 * 205.00035 * 24 23 4 43 43 H 1.08997 * 109.46718 * 324.99600 * 24 23 4 44 44 H 1.09001 * 109.47184 * 59.99906 * 25 24 23 45 45 H 1.09001 * 109.46909 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47196 * 300.00101 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 16 4.5143 1.4418 1.4049 6 6 5.9894 1.4417 0.4480 7 6 7.3515 1.4416 0.9864 8 8 8.3025 1.5655 0.2365 9 7 7.5520 1.3042 2.3121 10 6 6.4820 1.2452 3.1637 11 1 5.6629 0.5728 2.9557 12 6 6.4524 2.0465 4.2992 13 7 7.3871 2.9500 4.4902 14 14 5.0838 1.8388 5.5534 15 1 4.1637 0.7615 5.1083 16 1 5.6691 1.4768 6.8694 17 1 4.3310 3.1125 5.6801 18 6 8.9153 1.2181 2.8416 19 6 9.3873 -0.2367 2.8008 20 8 9.4815 -0.6689 1.4420 21 6 9.9161 -2.0219 1.2914 22 6 5.6610 1.4482 -0.8797 23 6 4.3050 1.4424 -1.1037 24 6 3.7146 1.4426 -2.4904 25 6 3.3996 2.8797 -2.9103 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 7.3662 3.5095 5.2823 34 1 9.5801 1.8330 2.2350 35 1 8.9284 1.5757 3.8712 36 1 10.3654 -0.3147 3.2755 37 1 8.6737 -0.8653 3.3334 38 1 9.9620 -2.2729 0.2317 39 1 10.9050 -2.1374 1.7350 40 1 9.2131 -2.6872 1.7925 41 1 6.3941 1.4542 -1.6727 42 1 4.4291 1.0081 -3.1894 43 1 2.7976 0.8534 -2.4948 44 1 4.3166 3.4689 -2.9057 45 1 2.9730 2.8799 -3.9133 46 1 2.6851 3.3142 -2.2111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457180073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:24 Heat of formation + Delta-G solvation = -72.905926 kcal Electronic energy + Delta-G solvation = -26394.607080 eV Core-core repulsion = 22796.366689 eV Total energy + Delta-G solvation = -3598.240390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.74753 -38.02318 -36.84233 -34.82960 -34.44300 -32.15363 -31.79002 -29.89570 -28.98429 -26.30561 -25.69685 -24.98254 -23.60314 -22.96909 -21.25845 -20.98084 -19.32532 -18.16578 -17.17699 -16.57059 -15.83364 -15.44641 -15.39298 -14.72684 -14.52538 -14.39409 -14.25814 -13.90633 -13.74381 -13.55886 -13.24749 -13.01496 -12.74831 -12.38993 -12.21451 -11.90603 -11.76870 -11.67143 -11.44298 -11.38315 -11.21246 -11.18025 -11.09748 -10.91365 -10.82636 -10.66935 -10.58163 -10.45221 -10.38825 -10.24519 -9.67410 -9.04628 -8.99361 -8.51163 -7.73564 -7.46578 -7.36087 -6.56263 -4.41674 1.55348 2.60836 2.96219 3.10274 3.12212 3.14830 3.23691 3.92666 4.45904 4.55121 4.72000 4.94406 5.06191 5.11292 5.21037 5.35840 5.41491 5.61002 5.66181 5.69035 5.73042 5.76506 5.87363 5.92457 5.95023 6.00649 6.05062 6.06264 6.09709 6.11748 6.15890 6.25143 6.33098 6.38759 6.39091 6.42559 6.54083 6.77359 6.91577 7.08058 7.18865 7.24892 7.31598 7.87090 7.91658 8.20677 8.86913 9.43930 9.91547 10.43790 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.005278 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.073838 B = 5303.961759 C = 6754.425734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.041 4.041 4 C -0.284 4.284 5 S 0.277 5.723 6 C -0.214 4.214 7 C 0.553 3.447 8 O -0.574 6.574 9 N -0.440 5.440 10 C -0.340 4.340 11 H 0.096 0.904 12 C 0.061 3.939 13 N -0.848 5.848 14 Si 0.903 3.097 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.273 1.273 18 C 0.127 3.873 19 C 0.046 3.954 20 O -0.367 6.367 21 C 0.032 3.968 22 C -0.095 4.095 23 C -0.120 4.120 24 C -0.060 4.060 25 C -0.144 4.144 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.275 0.725 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.134 0.866 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -4.915 -3.889 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.079 4.079 4 C -0.402 4.402 5 S 0.553 5.447 6 C -0.336 4.336 7 C 0.342 3.658 8 O -0.458 6.458 9 N -0.159 5.159 10 C -0.474 4.474 11 H 0.113 0.887 12 C -0.149 4.149 13 N -0.482 5.482 14 Si 0.728 3.272 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.198 1.198 18 C 0.004 3.996 19 C -0.032 4.032 20 O -0.285 6.285 21 C -0.065 4.065 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.201 4.201 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.152 0.848 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.855 -4.559 -2.719 9.480 hybrid contribution -0.172 -0.284 -0.592 0.679 sum -8.027 -4.843 -3.311 9.942 Atomic orbital electron populations 1.21784 0.96100 1.01348 1.01601 1.21535 0.95024 0.96674 1.02488 1.20010 0.89104 0.96799 1.02026 1.25225 1.01013 1.10713 1.03276 1.84386 0.92410 1.65180 1.02752 1.24647 0.98039 1.13944 0.96926 1.17258 0.86042 0.79235 0.83275 1.90673 1.42128 1.54307 1.58708 1.42999 1.05205 1.63892 1.03850 1.19313 0.99026 1.23478 1.05594 0.88722 1.25601 0.97274 0.93211 0.98810 1.69801 1.32730 1.18068 1.27567 0.86191 0.81211 0.79376 0.80419 1.18165 1.19995 1.19777 1.21384 0.84330 0.91843 1.02086 1.23161 0.98266 0.98555 0.83172 1.88187 1.87982 1.26353 1.25965 1.22625 0.97261 0.85073 1.01542 1.20300 0.94909 1.02384 0.95217 1.18316 0.92541 1.07401 0.95033 1.20153 0.99890 0.96888 0.93034 1.21727 1.01624 0.96801 0.99986 0.92931 0.92930 0.92807 0.91916 0.91787 0.91673 0.91253 0.91411 0.91667 0.86968 0.94198 0.93518 0.90550 0.95130 0.94999 0.84833 0.91894 0.91899 0.92624 0.93252 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 3 C -0.04 -0.56 5.04 -27.88 -0.14 -0.70 16 4 C -0.28 -4.93 5.53 -35.85 -0.20 -5.12 16 5 S 0.28 5.57 18.29 -107.50 -1.97 3.61 16 6 C -0.21 -4.96 6.30 -36.80 -0.23 -5.19 16 7 C 0.55 14.45 7.12 -12.95 -0.09 14.36 16 8 O -0.57 -16.22 15.54 -6.49 -0.10 -16.32 16 9 N -0.44 -11.11 2.44 -116.37 -0.28 -11.39 16 10 C -0.34 -8.25 6.87 -15.01 -0.10 -8.35 16 11 H 0.10 2.24 5.28 -31.11 -0.16 2.08 16 12 C 0.06 1.45 5.18 -17.45 -0.09 1.36 16 13 N -0.85 -21.13 11.49 55.50 0.64 -20.50 16 14 Si 0.90 18.15 29.56 -169.99 -5.02 13.12 16 15 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 18 C 0.13 3.00 5.40 -4.04 -0.02 2.98 16 19 C 0.05 0.94 6.28 37.16 0.23 1.18 16 20 O -0.37 -7.97 9.25 -46.87 -0.43 -8.41 16 21 C 0.03 0.53 11.01 101.05 1.11 1.64 16 22 C -0.10 -1.98 9.79 -40.40 -0.40 -2.37 16 23 C -0.12 -2.13 5.04 -106.45 -0.54 -2.67 16 24 C -0.06 -0.86 5.54 -27.88 -0.15 -1.01 16 25 C -0.14 -1.85 9.83 37.16 0.37 -1.49 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.79 7.74 -51.93 -0.40 0.38 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.89 6.39 -51.93 -0.33 0.56 16 33 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 34 H 0.06 1.63 7.48 -51.93 -0.39 1.24 16 35 H 0.11 2.67 5.92 -51.93 -0.31 2.36 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 42 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 43 H 0.06 0.81 7.06 -51.93 -0.37 0.45 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.68 7.24 -51.93 -0.38 0.31 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -28.83 381.95 -8.85 -37.68 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.39 Total: 4.63 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.04 Total: -8.17 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.35 Total: -31.89 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.53 Total: -24.73 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.12 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.97 Total: 3.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.83 -8.85 -37.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.230 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds