Wall clock time and date at job start Tue Mar 31 2020 14:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46909 * 2 1 4 4 C 1.50707 * 109.47259 * 180.02562 * 3 2 1 5 5 S 1.70619 * 124.51171 * 270.02551 * 4 3 2 6 6 C 1.75828 * 91.56423 * 179.97438 * 5 4 3 7 7 C 1.46465 * 125.46019 * 179.97438 * 6 5 4 8 8 O 1.21740 * 120.00172 * 186.75270 * 7 6 5 9 9 N 1.34780 * 119.99854 * 6.76007 * 7 6 5 10 10 C 1.36880 * 120.00063 * 356.09352 * 9 7 6 11 11 H 1.07998 * 120.00069 * 49.32477 * 10 9 7 12 12 C 1.39009 * 119.99697 * 229.05216 * 10 9 7 13 13 N 1.31391 * 120.00030 * 6.44222 * 12 10 9 14 14 Si 1.86803 * 119.99672 * 186.44029 * 12 10 9 15 15 H 1.48496 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47006 * 120.00123 * 14 12 10 17 17 H 1.48494 * 109.47139 * 239.99833 * 14 12 10 18 18 C 1.46498 * 119.99861 * 176.09056 * 9 7 6 19 19 C 1.53000 * 109.47451 * 273.51584 * 18 9 7 20 20 O 1.42898 * 109.46780 * 64.99865 * 19 18 9 21 21 C 1.42906 * 113.99505 * 180.02562 * 20 19 18 22 22 C 1.36767 * 109.08029 * 0.26440 * 6 5 4 23 23 C 1.33842 * 124.51794 * 89.97896 * 4 3 2 24 24 C 1.50705 * 122.44394 * 0.02562 * 23 4 3 25 25 C 1.52998 * 109.47115 * 84.99875 * 24 23 4 26 26 H 1.08992 * 109.47361 * 59.99712 * 1 2 3 27 27 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47298 * 299.99824 * 1 2 3 29 29 H 1.09001 * 109.47298 * 240.00176 * 2 1 3 30 30 H 1.08999 * 109.47603 * 119.99639 * 2 1 3 31 31 H 1.09001 * 109.47731 * 60.00099 * 3 2 1 32 32 H 1.09004 * 109.47312 * 299.99875 * 3 2 1 33 33 H 0.97005 * 120.00264 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46699 * 33.51765 * 18 9 7 35 35 H 1.09000 * 109.47167 * 153.51014 * 18 9 7 36 36 H 1.08996 * 109.47235 * 184.99620 * 19 18 9 37 37 H 1.09000 * 109.46931 * 305.00226 * 19 18 9 38 38 H 1.09000 * 109.46892 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47155 * 299.99828 * 21 20 19 40 40 H 1.08991 * 109.47236 * 60.00614 * 21 20 19 41 41 H 1.07997 * 123.36193 * 179.69770 * 22 6 5 42 42 H 1.09000 * 109.46647 * 205.00035 * 24 23 4 43 43 H 1.08997 * 109.46718 * 324.99600 * 24 23 4 44 44 H 1.09001 * 109.47184 * 59.99906 * 25 24 23 45 45 H 1.09001 * 109.46909 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47196 * 300.00101 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 16 4.5143 1.4418 1.4049 6 6 5.9894 1.4417 0.4480 7 6 7.3515 1.4416 0.9864 8 8 8.3025 1.5655 0.2365 9 7 7.5520 1.3042 2.3121 10 6 6.4820 1.2452 3.1637 11 1 5.6629 0.5728 2.9557 12 6 6.4524 2.0465 4.2992 13 7 7.3871 2.9500 4.4902 14 14 5.0838 1.8388 5.5534 15 1 4.1637 0.7615 5.1083 16 1 5.6691 1.4768 6.8694 17 1 4.3310 3.1125 5.6801 18 6 8.9153 1.2181 2.8416 19 6 9.3873 -0.2367 2.8008 20 8 9.4815 -0.6689 1.4420 21 6 9.9161 -2.0219 1.2914 22 6 5.6610 1.4482 -0.8797 23 6 4.3050 1.4424 -1.1037 24 6 3.7146 1.4426 -2.4904 25 6 3.3996 2.8797 -2.9103 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 7.3662 3.5095 5.2823 34 1 9.5801 1.8330 2.2350 35 1 8.9284 1.5757 3.8712 36 1 10.3654 -0.3147 3.2755 37 1 8.6737 -0.8653 3.3334 38 1 9.9620 -2.2729 0.2317 39 1 10.9050 -2.1374 1.7350 40 1 9.2131 -2.6872 1.7925 41 1 6.3941 1.4542 -1.6727 42 1 4.4291 1.0081 -3.1894 43 1 2.7976 0.8534 -2.4948 44 1 4.3166 3.4689 -2.9057 45 1 2.9730 2.8799 -3.9133 46 1 2.6851 3.3142 -2.2111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:23 Heat of formation + Delta-G solvation = -87.225862 kcal Electronic energy + Delta-G solvation = -26395.228039 eV Core-core repulsion = 22796.366689 eV Total energy + Delta-G solvation = -3598.861349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.56148 -39.51460 -38.47169 -36.66806 -35.62059 -33.65523 -33.42537 -31.43384 -30.35842 -27.68730 -27.24878 -26.67837 -24.78956 -24.51918 -22.70863 -22.20104 -21.13438 -19.73229 -18.81179 -18.26064 -17.45393 -17.10312 -16.86310 -16.39360 -16.08031 -15.93717 -15.57160 -15.36265 -15.21871 -14.79589 -14.49944 -14.42409 -14.19278 -13.74607 -13.52899 -13.48330 -13.21365 -13.17528 -12.90289 -12.75359 -12.70168 -12.58383 -12.42394 -12.25651 -12.16556 -12.00981 -11.92880 -11.88309 -11.72572 -11.53215 -11.28718 -10.72852 -10.60749 -10.41503 -9.49459 -9.13263 -8.99734 -8.38113 -6.31073 -0.07220 0.98740 1.37792 1.45503 1.55950 1.59355 1.68780 2.24403 2.61571 2.91746 2.97199 3.16573 3.92982 4.14995 4.15734 4.25079 4.25299 4.34636 4.35918 4.40079 4.52128 4.54049 4.54765 4.61055 4.64422 4.75264 4.76895 4.83653 4.87945 4.92544 4.96832 5.05185 5.07821 5.11566 5.20621 5.26325 5.31139 5.34790 5.39796 5.44159 5.52679 5.69587 5.84488 6.04791 6.30407 6.42060 7.00617 7.51991 8.01083 8.63967 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.005278 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.073838 B = 5303.961759 C = 6754.425734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.042 4.042 4 C -0.258 4.258 5 S 0.272 5.728 6 C -0.266 4.266 7 C 0.536 3.464 8 O -0.615 6.615 9 N -0.445 5.445 10 C -0.355 4.355 11 H 0.101 0.899 12 C 0.026 3.974 13 N -0.883 5.883 14 Si 0.960 3.040 15 H -0.244 1.244 16 H -0.268 1.268 17 H -0.271 1.271 18 C 0.126 3.874 19 C 0.056 3.944 20 O -0.405 6.405 21 C 0.027 3.973 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.057 4.057 25 C -0.141 4.141 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.279 0.721 34 H 0.037 0.963 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 -5.967 -4.193 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.081 4.081 4 C -0.376 4.376 5 S 0.547 5.453 6 C -0.386 4.386 7 C 0.326 3.674 8 O -0.503 6.503 9 N -0.163 5.163 10 C -0.487 4.487 11 H 0.118 0.882 12 C -0.180 4.180 13 N -0.518 5.518 14 Si 0.781 3.219 15 H -0.167 1.167 16 H -0.193 1.193 17 H -0.196 1.196 18 C 0.003 3.997 19 C -0.021 4.021 20 O -0.325 6.325 21 C -0.069 4.069 22 C -0.123 4.123 23 C -0.139 4.139 24 C -0.097 4.097 25 C -0.198 4.198 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.143 0.857 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.053 -5.632 -2.992 12.761 hybrid contribution 0.793 0.034 -0.615 1.004 sum -10.260 -5.598 -3.607 12.232 Atomic orbital electron populations 1.21745 0.93903 1.02301 1.02414 1.21514 0.96892 0.95129 1.01992 1.20206 0.86035 0.98381 1.03461 1.25515 1.02825 1.07924 1.01375 1.84043 0.91522 1.65722 1.04015 1.24544 0.97916 1.17817 0.98341 1.17777 0.87079 0.79004 0.83502 1.90607 1.43674 1.56495 1.59542 1.43226 1.05972 1.63202 1.03941 1.19589 0.99339 1.24024 1.05752 0.88202 1.26348 0.99157 0.92483 1.00051 1.69902 1.34453 1.19028 1.28374 0.85343 0.78746 0.79670 0.78141 1.16675 1.19315 1.19603 1.21354 0.83701 0.93847 1.00825 1.22988 0.99683 0.96175 0.83262 1.88134 1.88645 1.29294 1.26400 1.22849 0.98729 0.82702 1.02658 1.20520 0.96482 1.01035 0.94247 1.18591 0.91107 1.06913 0.97331 1.20233 1.00636 0.98275 0.90522 1.21709 1.01055 0.95396 1.01683 0.91712 0.91986 0.92434 0.91915 0.92934 0.90875 0.89161 0.91091 0.94454 0.87585 0.91217 0.93351 0.89655 0.92657 0.93891 0.85705 0.91531 0.89718 0.94304 0.90497 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.12 -2.50 5.92 30.59 0.18 -2.32 16 3 C -0.04 -1.02 5.04 29.85 0.15 -0.87 16 4 C -0.26 -8.46 5.53 24.69 0.14 -8.33 16 5 S 0.27 10.91 18.29 -56.49 -1.03 9.87 16 6 C -0.27 -12.73 6.30 24.07 0.15 -12.58 16 7 C 0.54 29.55 7.12 86.39 0.62 30.17 16 8 O -0.62 -37.06 15.54 6.66 0.10 -36.96 16 9 N -0.45 -23.52 2.44 -640.28 -1.57 -25.09 16 10 C -0.35 -17.62 6.87 84.09 0.58 -17.04 16 11 H 0.10 4.79 5.28 -16.50 -0.09 4.71 16 12 C 0.03 1.26 5.18 84.94 0.44 1.70 16 13 N -0.88 -45.22 11.49 21.67 0.25 -44.97 16 14 Si 0.96 36.65 29.56 68.60 2.03 38.68 16 15 H -0.24 -8.67 7.11 99.48 0.71 -7.96 16 16 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 18 C 0.13 6.27 5.40 86.38 0.47 6.74 16 19 C 0.06 2.35 6.28 71.98 0.45 2.80 16 20 O -0.41 -18.08 9.25 -137.85 -1.27 -19.35 16 21 C 0.03 0.86 11.01 113.37 1.25 2.11 16 22 C -0.09 -3.76 9.79 21.74 0.21 -3.54 16 23 C -0.13 -4.37 5.04 -21.05 -0.11 -4.47 16 24 C -0.06 -1.47 5.54 29.85 0.17 -1.31 16 25 C -0.14 -3.22 9.83 71.98 0.71 -2.51 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.35 7.74 -2.39 -0.02 1.33 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.89 6.39 -2.38 -0.02 1.88 16 33 H 0.28 13.27 8.31 -92.70 -0.77 12.50 16 34 H 0.04 2.00 7.48 -2.39 -0.02 1.99 16 35 H 0.11 5.30 5.92 -2.39 -0.01 5.29 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.13 5.40 8.06 -2.91 -0.02 5.37 16 42 H 0.07 1.67 8.11 -2.39 -0.02 1.65 16 43 H 0.08 1.83 7.06 -2.39 -0.02 1.81 16 44 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.05 1.24 7.24 -2.39 -0.02 1.22 16 Total: -1.00 -65.91 381.95 5.51 -60.40 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.89 Total: 28.50 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 6.11 Total: -11.09 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -1.32 Total: -70.05 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -1.17 Total: -56.31 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 16 Polarization: 10.91 SS G_CDS: -1.03 Total: 9.87 kcal Total: -65.91 5.51 -60.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.822 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds