Wall clock time and date at job start Tue Mar 31 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00366 * 2 1 4 4 C 1.52995 * 109.47254 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47129 * 66.05913 * 4 3 2 6 6 C 1.37097 * 120.00073 * 266.65146 * 5 4 3 7 7 H 1.07993 * 120.00486 * 142.11022 * 6 5 4 8 8 C 1.38953 * 119.99523 * 322.10866 * 6 5 4 9 9 N 1.31418 * 119.99648 * 157.75138 * 8 6 5 10 10 Si 1.86799 * 120.00475 * 337.75225 * 8 6 5 11 11 H 1.48505 * 109.47161 * 95.33973 * 10 8 6 12 12 H 1.48496 * 109.47267 * 215.34231 * 10 8 6 13 13 H 1.48497 * 109.46973 * 335.34487 * 10 8 6 14 14 C 1.34775 * 119.99969 * 86.65074 * 5 4 3 15 15 O 1.21296 * 120.00236 * 359.97438 * 14 5 4 16 16 C 1.50700 * 120.00118 * 180.02562 * 14 5 4 17 17 C 1.52991 * 109.47568 * 179.97438 * 16 14 5 18 18 C 1.53000 * 109.47774 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47432 * 180.02562 * 18 17 16 20 20 C 1.38420 * 122.53940 * 265.02413 * 19 18 17 21 21 C 1.33398 * 114.92104 * 179.73544 * 20 19 18 22 22 C 1.50698 * 125.20225 * 179.97438 * 21 20 19 23 23 S 1.75885 * 109.59166 * 359.97438 * 21 20 19 24 24 C 1.33396 * 122.53733 * 84.73724 * 19 18 17 25 25 C 1.50698 * 125.20530 * 0.24436 * 24 19 18 26 26 H 1.09001 * 109.47008 * 300.00163 * 1 2 3 27 27 H 1.08996 * 109.47146 * 59.99801 * 1 2 3 28 28 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47032 * 59.99620 * 3 2 1 30 30 H 1.08999 * 109.47003 * 300.00534 * 3 2 1 31 31 H 1.08994 * 109.47258 * 306.05654 * 4 3 2 32 32 H 1.09003 * 109.47038 * 186.05713 * 4 3 2 33 33 H 0.97003 * 119.99747 * 179.97438 * 9 8 6 34 34 H 1.09008 * 109.47011 * 59.99588 * 16 14 5 35 35 H 1.09002 * 109.47034 * 300.00207 * 16 14 5 36 36 H 1.09008 * 109.47095 * 59.99880 * 17 16 14 37 37 H 1.09002 * 109.47307 * 300.00279 * 17 16 14 38 38 H 1.09000 * 109.47179 * 59.99795 * 18 17 16 39 39 H 1.09002 * 109.46989 * 300.00545 * 18 17 16 40 40 H 1.08000 * 122.54040 * 359.70679 * 20 19 18 41 41 H 1.08995 * 109.47736 * 89.99067 * 22 21 20 42 42 H 1.08997 * 109.46858 * 209.99866 * 22 21 20 43 43 H 1.09008 * 109.46980 * 329.99095 * 22 21 20 44 44 H 1.08996 * 109.46687 * 89.99943 * 25 24 19 45 45 H 1.08992 * 109.47210 * 210.00327 * 25 24 19 46 46 H 1.08999 * 109.46950 * 330.00224 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9775 0.5874 -1.2633 6 6 4.1649 -0.7678 -1.3523 7 1 3.8901 -1.2929 -2.2550 8 6 4.7084 -1.4657 -0.2807 9 7 4.4983 -2.7576 -0.1636 10 14 5.7378 -0.5676 0.9934 11 1 4.8796 -0.1868 2.1440 12 1 6.8301 -1.4569 1.4635 13 1 6.3217 0.6550 0.3855 14 6 4.1999 1.3704 -2.3376 15 8 4.0337 2.5693 -2.2591 16 6 4.6541 0.7561 -3.6366 17 6 4.8311 1.8551 -4.6861 18 6 5.2928 1.2317 -6.0048 19 6 5.4677 2.3143 -7.0383 20 6 4.4742 2.6479 -7.9426 21 6 4.7893 3.6321 -8.7861 22 6 3.8850 4.1778 -9.8611 23 16 6.4217 4.1954 -8.4518 24 6 6.5897 3.0275 -7.1474 25 6 7.8135 2.8592 -6.2844 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8502 0.5527 0.8299 32 1 3.9785 2.1746 0.1078 33 1 4.8781 -3.2449 0.5843 34 1 3.9065 0.0417 -3.9816 35 1 5.6035 0.2430 -3.4836 36 1 5.5784 2.5699 -4.3413 37 1 3.8814 2.3679 -4.8391 38 1 4.5458 0.5167 -6.3499 39 1 6.2425 0.7192 -5.8516 40 1 3.5166 2.1489 -7.9639 41 1 3.2930 4.9984 -9.4559 42 1 4.4880 4.5410 -10.6932 43 1 3.2199 3.3885 -10.2116 44 1 8.4821 2.1292 -6.7406 45 1 8.3279 3.8157 -6.1928 46 1 7.5156 2.5107 -5.2955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457205004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:59 Heat of formation + Delta-G solvation = -59.430114 kcal Electronic energy + Delta-G solvation = -25475.238150 eV Core-core repulsion = 21877.582115 eV Total energy + Delta-G solvation = -3597.656035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.09708 -38.58954 -37.05140 -34.89641 -34.14446 -32.49479 -31.90546 -29.87884 -29.39645 -27.40543 -25.79657 -24.75469 -24.27553 -22.97495 -21.75290 -20.66471 -18.86750 -18.19723 -17.07109 -16.86615 -16.33245 -15.77805 -15.35737 -15.04869 -14.75619 -14.64701 -14.35955 -14.27643 -13.71394 -13.62051 -13.41910 -13.21412 -12.96548 -12.74462 -12.58236 -12.43222 -12.14458 -12.01576 -11.73431 -11.60380 -11.55978 -11.37386 -11.08488 -11.02186 -10.93911 -10.84230 -10.68189 -10.45410 -10.15017 -10.02910 -9.89168 -9.11796 -9.05624 -8.49924 -8.40780 -8.18765 -7.74433 -6.38504 -3.94758 1.01674 1.62144 1.99951 2.75417 3.09387 3.24961 3.31797 3.78117 4.19411 4.35868 4.48810 4.73747 4.92364 5.06513 5.12129 5.21909 5.35013 5.35088 5.47939 5.54106 5.60008 5.64445 5.67745 5.71105 5.71657 5.85219 5.88098 5.91134 5.93350 5.98656 6.05464 6.06949 6.10775 6.19304 6.24193 6.37768 6.45237 6.48026 6.58987 6.63987 6.79229 6.88016 7.40706 7.82379 8.16445 8.32691 9.05043 9.43452 9.75777 10.72829 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002921 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.292588 B = 9583.893094 C =10434.846997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.056 3.944 4 C 0.101 3.899 5 N -0.456 5.456 6 C -0.330 4.330 7 H 0.102 0.898 8 C 0.073 3.927 9 N -0.856 5.856 10 Si 0.869 3.131 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.263 1.263 14 C 0.476 3.524 15 O -0.606 6.606 16 C -0.117 4.117 17 C -0.093 4.093 18 C -0.062 4.062 19 C -0.093 4.093 20 C -0.126 4.126 21 C -0.186 4.186 22 C -0.079 4.079 23 S 0.070 5.930 24 C -0.176 4.176 25 C -0.084 4.084 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.272 0.728 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 9.117 -12.477 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.022 4.022 4 C -0.023 4.023 5 N -0.176 5.176 6 C -0.457 4.457 7 H 0.120 0.880 8 C -0.134 4.134 9 N -0.491 5.491 10 Si 0.697 3.303 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.187 1.187 14 C 0.267 3.733 15 O -0.492 6.492 16 C -0.156 4.156 17 C -0.131 4.131 18 C -0.102 4.102 19 C -0.104 4.104 20 C -0.156 4.156 21 C -0.303 4.303 22 C -0.138 4.138 23 S 0.335 5.665 24 C -0.293 4.293 25 C -0.143 4.143 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.155 0.845 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.308 10.455 -12.962 16.705 hybrid contribution -0.739 -0.664 1.479 1.781 sum 0.569 9.792 -11.484 15.102 Atomic orbital electron populations 1.22654 0.83078 1.02057 0.98710 1.88213 1.17642 1.26708 1.95007 1.22862 0.95072 0.85109 0.99198 1.21703 0.92146 0.99037 0.89386 1.43692 1.57896 1.07559 1.08473 1.18932 1.42229 0.79910 1.04651 0.88045 1.25235 0.96007 0.95065 0.97089 1.69788 1.40571 1.08213 1.30574 0.87067 0.80745 0.80557 0.81933 1.20238 1.21524 1.18697 1.20513 0.80100 0.86081 0.86638 1.90526 1.57834 1.15304 1.85568 1.21349 1.03255 0.98297 0.92733 1.21280 1.02030 0.97641 0.92168 1.20404 1.02219 0.94737 0.92858 1.18856 0.92816 0.99948 0.98812 1.19999 1.00600 0.98807 0.96186 1.24308 0.98505 1.03160 1.04330 1.20295 0.97370 1.01160 0.94960 1.84031 1.11669 1.38982 1.31833 1.24197 1.00789 1.01612 1.02713 1.20370 0.93038 1.02165 0.98727 0.95219 0.94942 0.90095 0.94080 0.93325 0.90664 0.90116 0.91750 0.89953 0.89335 0.91725 0.91836 0.90990 0.90905 0.84463 0.90926 0.91624 0.90665 0.90933 0.91626 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.78 10.38 -35.23 -0.37 -8.14 16 3 C 0.06 1.13 6.26 37.15 0.23 1.36 16 4 C 0.10 2.28 4.47 -4.04 -0.02 2.26 16 5 N -0.46 -11.03 2.14 -114.81 -0.25 -11.27 16 6 C -0.33 -8.58 8.76 -14.93 -0.13 -8.71 16 7 H 0.10 2.76 7.24 -52.49 -0.38 2.38 16 8 C 0.07 1.95 5.28 -17.46 -0.09 1.85 16 9 N -0.86 -23.82 13.96 55.50 0.77 -23.04 16 10 Si 0.87 20.56 25.06 -169.99 -4.26 16.30 16 11 H -0.28 -6.35 6.67 56.52 0.38 -5.97 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.26 -6.24 7.11 56.52 0.40 -5.83 16 14 C 0.48 10.95 7.62 -10.99 -0.08 10.86 16 15 O -0.61 -14.89 15.62 5.54 0.09 -14.80 16 16 C -0.12 -2.20 4.39 -27.89 -0.12 -2.32 16 17 C -0.09 -1.53 4.43 -26.74 -0.12 -1.65 16 18 C -0.06 -0.85 4.84 -27.89 -0.14 -0.98 16 19 C -0.09 -1.25 5.06 -106.25 -0.54 -1.78 16 20 C -0.13 -1.58 9.83 -41.21 -0.41 -1.99 16 21 C -0.19 -2.15 6.51 -36.00 -0.23 -2.38 16 22 C -0.08 -0.67 10.38 36.00 0.37 -0.29 16 23 S 0.07 0.81 23.31 -107.50 -2.51 -1.69 16 24 C -0.18 -2.26 6.50 -36.00 -0.23 -2.50 16 25 C -0.08 -0.94 9.79 36.00 0.35 -0.59 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.77 3.48 -51.93 -0.18 1.59 16 32 H 0.08 1.74 7.53 -51.93 -0.39 1.35 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.52 7.67 -51.92 -0.40 1.12 16 35 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 36 H 0.06 1.12 7.24 -51.92 -0.38 0.75 16 37 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 39 H 0.07 0.93 7.51 -51.93 -0.39 0.54 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.00 6.50 -51.93 -0.34 0.66 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -30.68 385.75 -8.27 -38.95 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.52 Total: 3.12 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.04 Total: -5.22 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.53 Total: -34.31 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.28 Total: -22.95 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.26 Total: 16.30 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.68 -8.27 -38.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457205004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.480 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds