Wall clock time and date at job start Tue Mar 31 2020 14:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00366 * 2 1 4 4 C 1.52995 * 109.47254 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47129 * 66.05913 * 4 3 2 6 6 C 1.37097 * 120.00073 * 266.65146 * 5 4 3 7 7 H 1.07993 * 120.00486 * 142.11022 * 6 5 4 8 8 C 1.38953 * 119.99523 * 322.10866 * 6 5 4 9 9 N 1.31418 * 119.99648 * 157.75138 * 8 6 5 10 10 Si 1.86799 * 120.00475 * 337.75225 * 8 6 5 11 11 H 1.48505 * 109.47161 * 95.33973 * 10 8 6 12 12 H 1.48496 * 109.47267 * 215.34231 * 10 8 6 13 13 H 1.48497 * 109.46973 * 335.34487 * 10 8 6 14 14 C 1.34775 * 119.99969 * 86.65074 * 5 4 3 15 15 O 1.21296 * 120.00236 * 359.97438 * 14 5 4 16 16 C 1.50700 * 120.00118 * 180.02562 * 14 5 4 17 17 C 1.52991 * 109.47568 * 179.97438 * 16 14 5 18 18 C 1.53000 * 109.47774 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47432 * 180.02562 * 18 17 16 20 20 C 1.38420 * 122.53940 * 265.02413 * 19 18 17 21 21 C 1.33398 * 114.92104 * 179.73544 * 20 19 18 22 22 C 1.50698 * 125.20225 * 179.97438 * 21 20 19 23 23 S 1.75885 * 109.59166 * 359.97438 * 21 20 19 24 24 C 1.33396 * 122.53733 * 84.73724 * 19 18 17 25 25 C 1.50698 * 125.20530 * 0.24436 * 24 19 18 26 26 H 1.09001 * 109.47008 * 300.00163 * 1 2 3 27 27 H 1.08996 * 109.47146 * 59.99801 * 1 2 3 28 28 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47032 * 59.99620 * 3 2 1 30 30 H 1.08999 * 109.47003 * 300.00534 * 3 2 1 31 31 H 1.08994 * 109.47258 * 306.05654 * 4 3 2 32 32 H 1.09003 * 109.47038 * 186.05713 * 4 3 2 33 33 H 0.97003 * 119.99747 * 179.97438 * 9 8 6 34 34 H 1.09008 * 109.47011 * 59.99588 * 16 14 5 35 35 H 1.09002 * 109.47034 * 300.00207 * 16 14 5 36 36 H 1.09008 * 109.47095 * 59.99880 * 17 16 14 37 37 H 1.09002 * 109.47307 * 300.00279 * 17 16 14 38 38 H 1.09000 * 109.47179 * 59.99795 * 18 17 16 39 39 H 1.09002 * 109.46989 * 300.00545 * 18 17 16 40 40 H 1.08000 * 122.54040 * 359.70679 * 20 19 18 41 41 H 1.08995 * 109.47736 * 89.99067 * 22 21 20 42 42 H 1.08997 * 109.46858 * 209.99866 * 22 21 20 43 43 H 1.09008 * 109.46980 * 329.99095 * 22 21 20 44 44 H 1.08996 * 109.46687 * 89.99943 * 25 24 19 45 45 H 1.08992 * 109.47210 * 210.00327 * 25 24 19 46 46 H 1.08999 * 109.46950 * 330.00224 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9775 0.5874 -1.2633 6 6 4.1649 -0.7678 -1.3523 7 1 3.8901 -1.2929 -2.2550 8 6 4.7084 -1.4657 -0.2807 9 7 4.4983 -2.7576 -0.1636 10 14 5.7378 -0.5676 0.9934 11 1 4.8796 -0.1868 2.1440 12 1 6.8301 -1.4569 1.4635 13 1 6.3217 0.6550 0.3855 14 6 4.1999 1.3704 -2.3376 15 8 4.0337 2.5693 -2.2591 16 6 4.6541 0.7561 -3.6366 17 6 4.8311 1.8551 -4.6861 18 6 5.2928 1.2317 -6.0048 19 6 5.4677 2.3143 -7.0383 20 6 4.4742 2.6479 -7.9426 21 6 4.7893 3.6321 -8.7861 22 6 3.8850 4.1778 -9.8611 23 16 6.4217 4.1954 -8.4518 24 6 6.5897 3.0275 -7.1474 25 6 7.8135 2.8592 -6.2844 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8502 0.5527 0.8299 32 1 3.9785 2.1746 0.1078 33 1 4.8781 -3.2449 0.5843 34 1 3.9065 0.0417 -3.9816 35 1 5.6035 0.2430 -3.4836 36 1 5.5784 2.5699 -4.3413 37 1 3.8814 2.3679 -4.8391 38 1 4.5458 0.5167 -6.3499 39 1 6.2425 0.7192 -5.8516 40 1 3.5166 2.1489 -7.9639 41 1 3.2930 4.9984 -9.4559 42 1 4.4880 4.5410 -10.6932 43 1 3.2199 3.3885 -10.2116 44 1 8.4821 2.1292 -6.7406 45 1 8.3279 3.8157 -6.1928 46 1 7.5156 2.5107 -5.2955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457205004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:58 Heat of formation + Delta-G solvation = -75.825807 kcal Electronic energy + Delta-G solvation = -25475.949121 eV Core-core repulsion = 21877.582115 eV Total energy + Delta-G solvation = -3598.367006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81292 -39.67021 -38.63068 -36.70823 -35.36128 -33.92525 -33.57396 -31.36058 -30.40648 -28.68138 -27.24237 -26.58640 -25.30626 -24.41666 -23.08837 -21.80963 -20.74827 -19.25152 -18.64477 -18.07117 -17.98729 -17.50611 -16.97464 -16.57305 -16.24342 -15.92657 -15.89129 -15.35149 -15.19134 -15.06039 -14.46247 -14.36749 -14.18907 -13.98889 -13.92599 -13.63692 -13.52219 -13.25876 -13.17705 -13.08703 -12.85835 -12.63735 -12.52600 -12.41278 -12.36674 -12.08715 -12.02222 -11.87995 -11.72126 -11.56936 -11.41065 -11.04101 -10.60177 -10.34457 -9.69261 -9.31519 -9.13910 -8.42384 -6.00157 0.08905 0.72069 1.07062 1.21511 1.33192 1.43400 1.77983 1.93520 2.24260 2.63040 2.91217 3.15864 3.87316 3.96243 4.04057 4.12949 4.16497 4.21933 4.25650 4.36053 4.40731 4.46802 4.48895 4.53959 4.57967 4.66210 4.70668 4.73406 4.74304 4.77488 4.80738 4.83185 4.85046 4.94855 5.00883 5.07404 5.15594 5.23654 5.30434 5.44557 5.51613 5.61010 5.72687 6.14341 6.30304 6.38718 7.05124 7.48999 7.84102 8.72299 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002921 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.292588 B = 9583.893094 C =10434.846997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.061 3.939 4 C 0.091 3.909 5 N -0.467 5.467 6 C -0.323 4.323 7 H 0.081 0.919 8 C 0.037 3.963 9 N -0.894 5.894 10 Si 0.919 3.081 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.470 3.530 15 O -0.622 6.622 16 C -0.111 4.111 17 C -0.078 4.078 18 C -0.053 4.053 19 C -0.109 4.109 20 C -0.147 4.147 21 C -0.186 4.186 22 C -0.080 4.080 23 S 0.083 5.917 24 C -0.192 4.192 25 C -0.085 4.085 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.276 0.724 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 10.235 -12.980 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.016 4.016 4 C -0.032 4.032 5 N -0.187 5.187 6 C -0.451 4.451 7 H 0.099 0.901 8 C -0.168 4.168 9 N -0.531 5.531 10 Si 0.745 3.255 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.262 3.738 15 O -0.509 6.509 16 C -0.150 4.150 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.121 4.121 20 C -0.177 4.177 21 C -0.303 4.303 22 C -0.139 4.139 23 S 0.347 5.653 24 C -0.309 4.309 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.163 0.837 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.197 11.584 -13.464 17.802 hybrid contribution -0.776 -0.952 1.571 1.994 sum 0.421 10.631 -11.894 15.958 Atomic orbital electron populations 1.22865 0.80490 1.03179 1.00393 1.88141 1.20623 1.27558 1.95337 1.22783 0.93424 0.85020 1.00414 1.21843 0.94127 0.98895 0.88369 1.43805 1.58483 1.06995 1.09430 1.18764 1.41756 0.80638 1.03927 0.90133 1.25722 0.96725 0.95515 0.98806 1.69853 1.42002 1.09464 1.31777 0.86270 0.79525 0.79359 0.80335 1.19151 1.21094 1.19004 1.21165 0.79226 0.85950 0.87459 1.90506 1.58370 1.16042 1.86001 1.21365 1.03236 0.98952 0.91493 1.21116 1.01031 0.96525 0.92921 1.20280 1.02690 0.94940 0.91383 1.18923 0.93543 1.00325 0.99277 1.20165 1.01005 0.99760 0.96738 1.24743 0.98677 1.02456 1.04436 1.20416 0.97293 1.01742 0.94425 1.83949 1.11882 1.38327 1.31113 1.24489 1.01187 1.01859 1.03331 1.20410 0.92831 1.03064 0.98033 0.92614 0.94058 0.89373 0.90704 0.94067 0.91551 0.89471 0.91443 0.89630 0.88940 0.92788 0.93189 0.90228 0.90161 0.83672 0.90156 0.90389 0.89425 0.89575 0.90725 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.94 10.38 -148.98 -1.55 -18.49 16 3 C 0.06 2.40 6.26 71.98 0.45 2.86 16 4 C 0.09 4.03 4.47 86.38 0.39 4.41 16 5 N -0.47 -22.52 2.14 -635.55 -1.36 -23.89 16 6 C -0.32 -16.95 8.76 84.04 0.74 -16.22 16 7 H 0.08 4.48 7.24 -2.91 -0.02 4.46 16 8 C 0.04 1.94 5.28 84.93 0.45 2.39 16 9 N -0.89 -50.16 13.96 21.66 0.30 -49.86 16 10 Si 0.92 42.12 25.06 68.60 1.72 43.84 16 11 H -0.27 -11.64 6.67 99.48 0.66 -10.98 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 14 C 0.47 21.63 7.62 87.66 0.67 22.30 16 15 O -0.62 -30.45 15.62 -3.08 -0.05 -30.50 16 16 C -0.11 -4.20 4.39 29.85 0.13 -4.06 16 17 C -0.08 -2.54 4.43 30.59 0.14 -2.41 16 18 C -0.05 -1.41 4.84 29.85 0.14 -1.27 16 19 C -0.11 -2.85 5.06 -20.92 -0.11 -2.95 16 20 C -0.15 -3.55 9.83 21.22 0.21 -3.34 16 21 C -0.19 -4.00 6.51 24.59 0.16 -3.84 16 22 C -0.08 -1.18 10.38 71.24 0.74 -0.44 16 23 S 0.08 1.80 23.31 -56.49 -1.32 0.49 16 24 C -0.19 -4.74 6.50 24.59 0.16 -4.58 16 25 C -0.08 -1.81 9.79 71.24 0.70 -1.12 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 3.05 3.48 -2.39 -0.01 3.04 16 32 H 0.09 3.69 7.53 -2.39 -0.02 3.67 16 33 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.09 3.19 7.67 -2.38 -0.02 3.17 16 35 H 0.09 3.43 8.10 -2.39 -0.02 3.41 16 36 H 0.05 1.87 7.24 -2.38 -0.02 1.86 16 37 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 39 H 0.08 1.99 7.51 -2.39 -0.02 1.97 16 40 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.72 6.50 -2.39 -0.02 1.70 16 Total: -1.00 -65.00 385.75 4.87 -60.12 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.92 Total: 24.47 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 6.21 Total: -6.19 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.06 Total: -73.75 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -1.59 Total: -48.98 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.72 Total: 43.84 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.49 kcal Total: -65.00 4.87 -60.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457205004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.702 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds