Wall clock time and date at job start Tue Mar 31 2020 15:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36041 * 117.00064 * 2 1 4 4 C 1.38515 * 119.97105 * 0.02562 * 3 2 1 5 5 C 1.38409 * 120.38076 * 179.97438 * 4 3 2 6 6 C 1.38109 * 120.31073 * 0.02562 * 5 4 3 7 7 F 1.35102 * 120.03183 * 180.02562 * 6 5 4 8 8 C 1.39977 * 119.93192 * 0.02562 * 6 5 4 9 9 C 1.47401 * 120.18479 * 179.97438 * 8 6 5 10 10 O 1.21606 * 120.00376 * 89.99950 * 9 8 6 11 11 N 1.34778 * 119.99761 * 269.99422 * 9 8 6 12 12 C 1.46497 * 120.00077 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47329 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46953 * 300.00143 * 13 12 11 15 15 C 1.52998 * 109.46886 * 59.99865 * 13 12 11 16 16 C 1.50693 * 109.47053 * 180.02562 * 13 12 11 17 17 H 1.07998 * 120.00573 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99841 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99821 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99842 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47468 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47082 * 119.99905 * 20 18 16 23 23 H 1.48501 * 109.46982 * 239.99414 * 20 18 16 24 24 C 1.39026 * 119.96955 * 179.72625 * 3 2 1 25 25 O 1.35752 * 120.15485 * 359.97438 * 24 3 2 26 26 C 1.42898 * 116.99863 * 89.99884 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99824 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99945 * 1 2 3 30 30 H 1.07999 * 119.80787 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.84326 * 180.02562 * 5 4 3 32 32 H 0.97003 * 119.99804 * 0.02562 * 11 9 8 33 33 H 1.08997 * 109.47097 * 299.99879 * 12 11 9 34 34 H 1.08999 * 109.47468 * 59.99732 * 12 11 9 35 35 H 1.09002 * 109.47386 * 59.99498 * 14 13 12 36 36 H 1.08994 * 109.47024 * 180.02562 * 14 13 12 37 37 H 1.09005 * 109.46982 * 299.99796 * 14 13 12 38 38 H 1.08997 * 109.47329 * 60.00358 * 15 13 12 39 39 H 1.09001 * 109.47060 * 180.02562 * 15 13 12 40 40 H 1.09007 * 109.47235 * 299.99808 * 15 13 12 41 41 H 0.96994 * 119.99732 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.47464 * 300.00165 * 26 25 24 43 43 H 1.08999 * 109.47126 * 60.00182 * 26 25 24 44 44 H 1.09004 * 109.47271 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2917 2.3734 0.0005 5 6 1.9112 3.6111 0.0011 6 6 3.2894 3.7007 0.0005 7 9 3.8882 4.9118 0.0016 8 6 4.0651 2.5355 -0.0011 9 6 5.5364 2.6247 -0.0022 10 8 6.1442 2.6606 1.0504 11 7 6.2080 2.6663 -1.1700 12 6 7.6703 2.7543 -1.1712 13 6 8.1782 2.7870 -2.6141 14 6 7.7435 1.5104 -3.3368 15 6 7.5934 4.0043 -3.3331 16 6 9.6824 2.8769 -2.6153 17 1 10.2223 2.9081 -1.6805 18 6 10.3695 2.9204 -3.8100 19 7 9.7120 2.8830 -4.9484 20 14 12.2341 3.0326 -3.8114 21 1 12.7295 3.0605 -2.4118 22 1 12.8004 1.8532 -4.5141 23 1 12.6547 4.2738 -4.5098 24 6 3.4350 1.2841 0.0058 25 8 4.1768 0.1472 0.0119 26 6 4.5368 -0.3994 -1.2584 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 0.2134 2.3128 0.0005 31 1 1.3141 4.5111 0.0019 32 1 5.7231 2.6380 -2.0096 33 1 7.9800 3.6640 -0.6568 34 1 8.0870 1.8873 -0.6585 35 1 6.6554 1.4448 -3.3358 36 1 8.1056 1.5335 -4.3645 37 1 8.1601 0.6431 -2.8245 38 1 7.9030 4.9138 -2.8183 39 1 7.9548 4.0274 -4.3612 40 1 6.5053 3.9388 -3.3322 41 1 10.1954 2.9132 -5.7887 42 1 3.6337 -0.6419 -1.8187 43 1 5.1245 0.3307 -1.8148 44 1 5.1270 -1.3038 -1.1107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:23 Heat of formation + Delta-G solvation = -127.135325 kcal Electronic energy + Delta-G solvation = -28705.155058 eV Core-core repulsion = 24538.349928 eV Total energy + Delta-G solvation = -4166.805130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.97315 -40.87733 -39.29645 -38.12856 -36.90657 -36.28713 -33.32026 -31.42924 -30.60587 -30.02748 -27.66133 -27.03479 -25.75460 -25.72673 -25.10385 -23.37149 -22.61794 -20.51640 -18.96120 -18.64726 -18.02009 -17.68406 -16.88004 -16.44492 -16.08133 -15.80625 -15.64841 -15.21765 -15.08552 -15.06100 -14.69237 -14.64842 -14.31744 -13.66208 -13.31754 -13.08377 -12.95314 -12.62872 -12.57182 -12.42548 -12.21363 -12.02197 -11.41809 -11.38875 -11.23199 -11.17519 -10.88656 -10.67171 -10.41541 -10.28513 -10.16769 -9.76304 -9.65689 -9.31604 -9.21164 -8.79801 -8.49944 -8.35750 -8.34506 -6.03190 -4.12993 0.56495 0.82365 2.64193 2.94780 2.99859 3.27176 3.35850 3.40552 3.48406 3.61493 4.08994 4.39089 4.42531 4.53004 4.74439 4.78811 4.87392 5.00639 5.13047 5.19557 5.23846 5.28290 5.35530 5.62831 5.67123 5.71833 5.77832 6.17907 6.24820 6.31020 6.48338 6.74126 6.78235 6.79970 6.90237 6.95844 6.99954 7.32786 7.34169 7.53711 7.68475 7.93538 7.99077 8.12294 8.36343 8.55767 8.87798 9.52939 10.98331 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.003314 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.094299 B = 8447.492368 C = 9003.222792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.301 6.301 3 C 0.099 3.901 4 C -0.159 4.159 5 C -0.120 4.120 6 C 0.110 3.890 7 F -0.125 7.125 8 C -0.137 4.137 9 C 0.561 3.439 10 O -0.527 6.527 11 N -0.704 5.704 12 C 0.130 3.870 13 C 0.056 3.944 14 C -0.130 4.130 15 C -0.131 4.131 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.129 3.871 25 O -0.316 6.316 26 C 0.033 3.967 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.398 0.602 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.004 0.996 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.259 0.741 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.228 -3.620 4.798 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.052 3.948 4 C -0.178 4.178 5 C -0.139 4.139 6 C 0.090 3.910 7 F -0.103 7.103 8 C -0.142 4.142 9 C 0.344 3.656 10 O -0.404 6.404 11 N -0.354 5.354 12 C 0.009 3.991 13 C 0.056 3.944 14 C -0.188 4.188 15 C -0.189 4.189 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.083 3.917 25 O -0.232 6.232 26 C -0.061 4.061 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.233 0.767 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.524 -3.852 5.493 21.593 hybrid contribution 0.516 0.506 -0.636 0.963 sum -20.008 -3.346 4.857 20.859 Atomic orbital electron populations 1.23151 0.78235 1.04369 1.01437 1.86210 1.21311 1.25412 1.88501 1.19205 0.91058 0.85386 0.99105 1.21045 1.00555 0.90746 1.05485 1.20869 0.92096 0.99010 1.01922 1.17300 0.90356 0.79566 1.03806 1.91568 1.83964 1.41077 1.93694 1.20293 0.95675 0.92169 1.06085 1.17639 0.85307 0.77578 0.85047 1.90805 1.68592 1.49664 1.31333 1.46328 1.09669 1.72278 1.07165 1.21825 0.75617 1.00803 1.00898 1.18364 0.95512 0.92887 0.87668 1.21840 0.95048 0.97523 1.04367 1.21837 0.95028 0.97741 1.04297 1.21017 0.90071 1.50514 0.92736 0.92303 1.24877 0.98331 0.94779 0.95509 1.69809 1.34834 1.50621 0.97183 0.86511 0.85635 0.77542 0.78183 1.19728 1.21067 1.21075 1.17529 0.86339 0.85520 1.02329 1.86072 1.70072 1.37143 1.29931 1.23166 0.99867 0.99373 0.83720 0.87903 0.92439 0.92404 0.83630 0.83465 0.76686 0.92377 0.92303 0.97738 0.89499 0.95309 0.95313 0.89522 0.97603 0.93064 0.93149 0.92700 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.30 -3.22 10.28 -34.52 -0.35 -3.58 16 3 C 0.10 1.17 6.69 -39.19 -0.26 0.91 16 4 C -0.16 -1.45 9.03 -39.42 -0.36 -1.81 16 5 C -0.12 -1.22 10.00 -39.57 -0.40 -1.61 16 6 C 0.11 1.55 7.28 -38.98 -0.28 1.27 16 7 F -0.12 -1.95 16.83 2.25 0.04 -1.91 16 8 C -0.14 -2.22 5.64 -104.82 -0.59 -2.81 16 9 C 0.56 10.96 6.42 -12.53 -0.08 10.88 16 10 O -0.53 -12.24 17.11 5.27 0.09 -12.15 16 11 N -0.70 -13.31 4.55 -61.39 -0.28 -13.59 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 15 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 16 C -0.50 -13.19 8.01 -34.44 -0.28 -13.47 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.42 9.35 55.43 0.52 -22.90 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 C 0.13 1.92 5.75 -38.59 -0.22 1.69 16 25 O -0.32 -5.01 9.65 -33.61 -0.32 -5.34 16 26 C 0.03 0.42 11.13 101.05 1.12 1.55 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.15 0.80 6.26 -52.49 -0.33 0.47 16 31 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.40 6.87 6.12 -40.82 -0.25 6.62 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 36 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 41 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -31.25 367.06 -5.78 -37.03 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.04 Total: 3.07 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 0.06 Total: -1.86 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.24 Total: -36.49 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.59 Total: -21.06 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.25 -5.78 -37.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.101 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds