Wall clock time and date at job start Tue Mar 31 2020 15:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35796 * 117.00114 * 2 1 4 4 C 1.38733 * 119.90251 * 359.97438 * 3 2 1 5 5 C 1.38094 * 120.12220 * 179.97438 * 4 3 2 6 6 F 1.35107 * 120.03422 * 180.02562 * 5 4 3 7 7 C 1.39945 * 119.93541 * 0.02562 * 5 4 3 8 8 C 1.47442 * 120.09652 * 179.97438 * 7 5 4 9 9 O 1.21600 * 120.00108 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00065 * 180.02562 * 8 7 5 11 11 C 1.46496 * 119.99990 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47239 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47198 * 299.99868 * 12 11 10 14 14 C 1.53009 * 109.47247 * 59.99703 * 12 11 10 15 15 C 1.50705 * 109.47365 * 179.97438 * 12 11 10 16 16 H 1.07999 * 119.99758 * 1.35309 * 15 12 11 17 17 C 1.37880 * 119.99752 * 181.34339 * 15 12 11 18 18 N 1.31511 * 119.99455 * 193.97701 * 17 15 12 19 19 Si 1.86797 * 120.00123 * 13.98250 * 17 15 12 20 20 H 1.48499 * 109.47210 * 84.54631 * 19 17 15 21 21 H 1.48500 * 109.46671 * 204.54457 * 19 17 15 22 22 H 1.48494 * 109.47213 * 324.54447 * 19 17 15 23 23 C 1.39833 * 119.80955 * 359.97438 * 7 5 4 24 24 C 1.38030 * 119.87706 * 359.97438 * 23 7 5 25 25 O 1.36045 * 119.96919 * 180.02562 * 24 23 7 26 26 C 1.42900 * 116.99760 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47516 * 299.99931 * 1 2 3 29 29 H 1.09004 * 109.47555 * 60.00063 * 1 2 3 30 30 H 1.07998 * 119.94306 * 0.28253 * 4 3 2 31 31 H 0.97000 * 119.99810 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.47122 * 299.99609 * 11 10 8 33 33 H 1.08998 * 109.47345 * 59.99704 * 11 10 8 34 34 H 1.09004 * 109.47494 * 69.36462 * 13 12 11 35 35 H 1.09000 * 109.47522 * 189.36559 * 13 12 11 36 36 H 1.09002 * 109.46941 * 309.36648 * 13 12 11 37 37 H 1.08995 * 109.46725 * 60.00128 * 14 12 11 38 38 H 1.08991 * 109.47040 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.46897 * 300.00357 * 14 12 11 40 40 H 0.97003 * 119.99828 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.06670 * 180.02562 * 23 7 5 42 42 H 1.09000 * 109.46584 * 179.97438 * 26 25 24 43 43 H 1.08991 * 109.47364 * 300.00179 * 26 25 24 44 44 H 1.09005 * 109.46648 * 60.00300 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2879 2.3722 -0.0005 5 6 1.9102 3.6050 0.0000 6 9 1.1707 4.7357 0.0000 7 6 3.3075 3.6820 0.0005 8 6 3.9755 4.9964 0.0005 9 8 3.3123 6.0155 -0.0004 10 7 5.3214 5.0683 0.0005 11 6 5.9852 6.3742 0.0011 12 6 7.5022 6.1753 0.0016 13 6 7.9137 5.3937 1.2508 14 6 7.9146 5.3941 -1.2477 15 6 8.1851 7.5188 0.0016 16 1 7.5961 8.4238 0.0233 17 6 9.5616 7.5924 -0.0260 18 7 10.1649 8.7283 0.2486 19 14 10.5695 6.0789 -0.4535 20 1 10.6789 5.9578 -1.9295 21 1 11.9271 6.2061 0.1347 22 1 9.9038 4.8699 0.0944 23 6 4.0683 2.5088 0.0011 24 6 3.4383 1.2806 0.0016 25 8 4.1767 0.1380 0.0027 26 6 5.5981 0.2843 0.0026 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2096 2.3128 0.0037 31 1 5.8505 4.2553 0.0009 32 1 5.6918 6.9313 -0.8887 33 1 5.6918 6.9306 0.8913 34 1 7.5568 4.3668 1.1709 35 1 9.0001 5.3949 1.3388 36 1 7.4771 5.8623 2.1328 37 1 7.6215 5.9510 -2.1376 38 1 8.9952 5.2521 -1.2470 39 1 7.4207 4.4225 -1.2481 40 1 11.1333 8.7802 0.2288 41 1 5.1470 2.5633 0.0019 42 1 6.0646 -0.7009 0.0040 43 1 5.9070 0.8318 -0.8878 44 1 5.9069 0.8334 0.8922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457997223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:20 Heat of formation + Delta-G solvation = -107.323615 kcal Electronic energy + Delta-G solvation = -28247.691628 eV Core-core repulsion = 24081.745599 eV Total energy + Delta-G solvation = -4165.946029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.89703 -40.99411 -39.46802 -38.84750 -37.00581 -36.41275 -33.46745 -31.72763 -30.81951 -30.37651 -27.79737 -27.54338 -26.47464 -26.10079 -24.97822 -23.43703 -22.49216 -20.58158 -19.49426 -18.92136 -18.10988 -17.63582 -16.82521 -16.60167 -16.22062 -15.98332 -15.62256 -15.58866 -15.31392 -15.04820 -14.97918 -14.73396 -14.66525 -14.15158 -13.29051 -13.23899 -13.06726 -12.95035 -12.77062 -12.59119 -12.27542 -12.23896 -12.10482 -11.98207 -11.79702 -11.59102 -11.39241 -10.97001 -10.48987 -10.36829 -10.22430 -10.12251 -9.69348 -9.24083 -9.17434 -8.74044 -8.63001 -8.49464 -8.12292 -6.18027 -4.15583 0.47537 0.80749 2.72519 2.73743 2.87552 3.19654 3.26263 3.35136 3.42639 3.58034 3.94555 4.20818 4.31630 4.48687 4.57057 4.75392 4.76109 4.85779 4.88850 4.92622 5.09213 5.09811 5.12270 5.26717 5.44905 5.62249 5.67778 5.76300 5.97752 6.00854 6.18580 6.27758 6.41965 6.45779 6.56706 6.57436 6.63784 6.70063 6.89281 7.09287 7.15906 7.37520 7.67487 7.80467 8.39907 8.48557 8.87683 9.45410 10.95104 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.003341 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.104634 B = 8379.112893 C = 9649.792004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.296 6.296 3 C 0.153 3.847 4 C -0.224 4.224 5 C 0.167 3.833 6 F -0.110 7.110 7 C -0.163 4.163 8 C 0.551 3.449 9 O -0.529 6.529 10 N -0.715 5.715 11 C 0.142 3.858 12 C 0.028 3.972 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.513 4.513 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.250 1.250 23 C -0.115 4.115 24 C 0.084 3.916 25 O -0.302 6.302 26 C 0.020 3.980 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.154 0.846 31 H 0.393 0.607 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.027 0.973 40 H 0.265 0.735 41 H 0.148 0.852 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -20.959 -0.487 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.209 6.209 3 C 0.106 3.894 4 C -0.244 4.244 5 C 0.146 3.854 6 F -0.088 7.088 7 C -0.168 4.168 8 C 0.337 3.663 9 O -0.407 6.407 10 N -0.367 5.367 11 C 0.020 3.980 12 C 0.027 3.973 13 C -0.200 4.200 14 C -0.205 4.205 15 C -0.551 4.551 16 H 0.095 0.905 17 C -0.127 4.127 18 N -0.526 5.526 19 Si 0.718 3.282 20 H -0.213 1.213 21 H -0.234 1.234 22 H -0.176 1.176 23 C -0.134 4.134 24 C 0.038 3.962 25 O -0.216 6.216 26 C -0.075 4.075 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.172 0.828 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.166 0.834 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.507 -20.429 -0.461 25.652 hybrid contribution 0.866 -0.622 -0.317 1.112 sum -14.641 -21.052 -0.778 25.654 Atomic orbital electron populations 1.23198 0.77888 1.04505 1.01793 1.86176 1.21618 1.25178 1.87908 1.18056 0.88885 0.84823 0.97683 1.20921 1.01307 0.89969 1.12208 1.17172 0.87622 0.82134 0.98489 1.91610 1.75874 1.48585 1.92756 1.19901 0.92279 0.94621 1.09996 1.17808 0.82842 0.87766 0.77894 1.90839 1.64536 1.35715 1.49619 1.46199 1.05442 1.11188 1.73826 1.21579 0.92772 0.81793 1.01891 1.18731 0.90590 0.96517 0.91447 1.22309 1.01745 0.96518 0.99414 1.22373 0.99718 0.97948 1.00463 1.20705 0.91582 0.90670 1.52180 0.90455 1.24975 0.97713 0.95831 0.94205 1.69949 1.09605 1.26176 1.46917 0.87294 0.78086 0.84532 0.78278 1.21324 1.23362 1.17573 1.21103 1.00546 0.89759 1.02042 1.17992 0.88250 0.86143 1.03797 1.86189 1.19075 1.27242 1.89100 1.23196 0.78036 1.04473 1.01830 0.87728 0.92188 0.92193 0.82847 0.77142 0.91645 0.91550 0.96174 0.92399 0.93255 0.92626 0.93935 0.95415 0.92514 0.83406 0.87730 0.92228 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.30 -2.92 10.26 -33.78 -0.35 -3.26 16 3 C 0.15 1.66 6.71 -38.94 -0.26 1.40 16 4 C -0.22 -2.36 8.99 -39.45 -0.35 -2.71 16 5 C 0.17 2.27 7.28 -39.00 -0.28 1.99 16 6 F -0.11 -1.73 15.53 2.25 0.03 -1.70 16 7 C -0.16 -2.31 5.88 -104.91 -0.62 -2.93 16 8 C 0.55 9.58 7.76 -12.51 -0.10 9.49 16 9 O -0.53 -11.19 15.32 5.28 0.08 -11.11 16 10 N -0.72 -11.83 4.95 -61.38 -0.30 -12.13 16 11 C 0.14 2.82 4.49 -4.04 -0.02 2.80 16 12 C 0.03 0.60 0.50 -155.66 -0.08 0.53 16 13 C -0.14 -2.80 7.53 37.16 0.28 -2.52 16 14 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 15 C -0.51 -13.58 8.62 -34.44 -0.30 -13.88 16 16 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 18 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 19 Si 0.89 20.60 22.79 -169.99 -3.87 16.73 16 20 H -0.29 -6.63 7.10 56.52 0.40 -6.23 16 21 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.25 -5.20 4.65 56.52 0.26 -4.93 16 23 C -0.11 -1.32 8.52 -39.06 -0.33 -1.65 16 24 C 0.08 0.95 6.69 -39.20 -0.26 0.69 16 25 O -0.30 -3.25 10.28 -34.56 -0.36 -3.60 16 26 C 0.02 0.14 9.81 101.05 0.99 1.14 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 29 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 30 H 0.15 1.18 6.27 -52.49 -0.33 0.85 16 31 H 0.39 5.49 4.28 -40.82 -0.17 5.31 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.02 0.32 7.13 -51.93 -0.37 -0.05 16 35 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 36 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.15 1.41 4.61 -52.48 -0.24 1.17 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 44 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -33.17 348.82 -4.52 -37.69 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.63 Total: 2.92 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.16 Total: -5.22 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.47 Total: -37.70 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.62 Total: -17.98 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.70 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -3.87 Total: 16.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.17 -4.52 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.631 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds