Wall clock time and date at job start Tue Mar 31 2020 15:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35796 * 117.00114 * 2 1 4 4 C 1.38733 * 119.90251 * 359.97438 * 3 2 1 5 5 C 1.38094 * 120.12220 * 179.97438 * 4 3 2 6 6 F 1.35107 * 120.03422 * 180.02562 * 5 4 3 7 7 C 1.39945 * 119.93541 * 0.02562 * 5 4 3 8 8 C 1.47442 * 120.09652 * 179.97438 * 7 5 4 9 9 O 1.21600 * 120.00108 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00065 * 180.02562 * 8 7 5 11 11 C 1.46496 * 119.99990 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47239 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47198 * 299.99868 * 12 11 10 14 14 C 1.53009 * 109.47247 * 59.99703 * 12 11 10 15 15 C 1.50705 * 109.47365 * 179.97438 * 12 11 10 16 16 H 1.07999 * 119.99758 * 1.35309 * 15 12 11 17 17 C 1.37880 * 119.99752 * 181.34339 * 15 12 11 18 18 N 1.31511 * 119.99455 * 193.97701 * 17 15 12 19 19 Si 1.86797 * 120.00123 * 13.98250 * 17 15 12 20 20 H 1.48499 * 109.47210 * 84.54631 * 19 17 15 21 21 H 1.48500 * 109.46671 * 204.54457 * 19 17 15 22 22 H 1.48494 * 109.47213 * 324.54447 * 19 17 15 23 23 C 1.39833 * 119.80955 * 359.97438 * 7 5 4 24 24 C 1.38030 * 119.87706 * 359.97438 * 23 7 5 25 25 O 1.36045 * 119.96919 * 180.02562 * 24 23 7 26 26 C 1.42900 * 116.99760 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47516 * 299.99931 * 1 2 3 29 29 H 1.09004 * 109.47555 * 60.00063 * 1 2 3 30 30 H 1.07998 * 119.94306 * 0.28253 * 4 3 2 31 31 H 0.97000 * 119.99810 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.47122 * 299.99609 * 11 10 8 33 33 H 1.08998 * 109.47345 * 59.99704 * 11 10 8 34 34 H 1.09004 * 109.47494 * 69.36462 * 13 12 11 35 35 H 1.09000 * 109.47522 * 189.36559 * 13 12 11 36 36 H 1.09002 * 109.46941 * 309.36648 * 13 12 11 37 37 H 1.08995 * 109.46725 * 60.00128 * 14 12 11 38 38 H 1.08991 * 109.47040 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.46897 * 300.00357 * 14 12 11 40 40 H 0.97003 * 119.99828 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.06670 * 180.02562 * 23 7 5 42 42 H 1.09000 * 109.46584 * 179.97438 * 26 25 24 43 43 H 1.08991 * 109.47364 * 300.00179 * 26 25 24 44 44 H 1.09005 * 109.46648 * 60.00300 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2879 2.3722 -0.0005 5 6 1.9102 3.6050 0.0000 6 9 1.1707 4.7357 0.0000 7 6 3.3075 3.6820 0.0005 8 6 3.9755 4.9964 0.0005 9 8 3.3123 6.0155 -0.0004 10 7 5.3214 5.0683 0.0005 11 6 5.9852 6.3742 0.0011 12 6 7.5022 6.1753 0.0016 13 6 7.9137 5.3937 1.2508 14 6 7.9146 5.3941 -1.2477 15 6 8.1851 7.5188 0.0016 16 1 7.5961 8.4238 0.0233 17 6 9.5616 7.5924 -0.0260 18 7 10.1649 8.7283 0.2486 19 14 10.5695 6.0789 -0.4535 20 1 10.6789 5.9578 -1.9295 21 1 11.9271 6.2061 0.1347 22 1 9.9038 4.8699 0.0944 23 6 4.0683 2.5088 0.0011 24 6 3.4383 1.2806 0.0016 25 8 4.1767 0.1380 0.0027 26 6 5.5981 0.2843 0.0026 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2096 2.3128 0.0037 31 1 5.8505 4.2553 0.0009 32 1 5.6918 6.9313 -0.8887 33 1 5.6918 6.9306 0.8913 34 1 7.5568 4.3668 1.1709 35 1 9.0001 5.3949 1.3388 36 1 7.4771 5.8623 2.1328 37 1 7.6215 5.9510 -2.1376 38 1 8.9952 5.2521 -1.2470 39 1 7.4207 4.4225 -1.2481 40 1 11.1333 8.7802 0.2288 41 1 5.1470 2.5633 0.0019 42 1 6.0646 -0.7009 0.0040 43 1 5.9070 0.8318 -0.8878 44 1 5.9069 0.8334 0.8922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457997223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:19 Heat of formation + Delta-G solvation = -131.398574 kcal Electronic energy + Delta-G solvation = -28248.735597 eV Core-core repulsion = 24081.745599 eV Total energy + Delta-G solvation = -4166.989998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.97812 -41.85235 -40.76510 -39.56911 -38.50234 -37.47149 -35.10818 -33.56103 -31.87209 -31.15872 -28.50692 -28.09111 -28.03003 -27.57742 -26.92449 -24.48056 -23.34121 -21.84968 -21.03964 -19.96774 -19.11207 -18.52775 -18.12302 -17.86819 -17.37417 -17.19773 -16.79681 -16.62999 -16.33415 -16.24525 -16.11114 -15.85654 -15.55999 -15.27268 -14.95465 -14.68609 -14.58452 -14.10305 -14.01040 -13.75272 -13.72338 -13.44943 -13.11749 -12.97171 -12.58661 -12.41603 -12.37213 -12.17437 -12.13651 -11.95668 -11.84010 -11.76917 -11.17221 -11.00198 -10.61763 -10.39041 -10.18426 -10.00351 -8.99643 -8.29356 -6.31760 -0.47749 -0.06722 1.36880 1.39521 1.52829 1.65277 2.04880 2.11343 2.20053 2.36042 2.47459 3.02931 3.06704 3.39368 3.50535 3.81709 3.92816 4.05267 4.28298 4.30810 4.32327 4.36310 4.40765 4.41104 4.47005 4.57283 4.70010 4.74748 4.79514 4.81659 4.84102 4.85837 4.87290 4.94350 5.04854 5.14838 5.28546 5.36539 5.50585 5.71256 5.79685 5.91129 6.29622 6.37087 6.49951 6.72785 7.14964 7.33116 8.88032 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.003341 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.104634 B = 8379.112893 C = 9649.792004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.308 6.308 3 C 0.158 3.842 4 C -0.212 4.212 5 C 0.146 3.854 6 F -0.130 7.130 7 C -0.182 4.182 8 C 0.551 3.449 9 O -0.577 6.577 10 N -0.701 5.701 11 C 0.156 3.844 12 C 0.028 3.972 13 C -0.143 4.143 14 C -0.149 4.149 15 C -0.520 4.520 16 H 0.025 0.975 17 C 0.015 3.985 18 N -0.948 5.948 19 Si 0.946 3.054 20 H -0.281 1.281 21 H -0.316 1.316 22 H -0.198 1.198 23 C -0.105 4.105 24 C 0.083 3.917 25 O -0.314 6.314 26 C 0.006 3.994 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.181 0.819 31 H 0.410 0.590 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.264 0.736 41 H 0.170 0.830 42 H 0.124 0.876 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 -26.033 -0.768 30.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.111 3.889 4 C -0.231 4.231 5 C 0.125 3.875 6 F -0.109 7.109 7 C -0.187 4.187 8 C 0.340 3.660 9 O -0.458 6.458 10 N -0.353 5.353 11 C 0.033 3.967 12 C 0.027 3.973 13 C -0.200 4.200 14 C -0.206 4.206 15 C -0.558 4.558 16 H 0.044 0.956 17 C -0.182 4.182 18 N -0.587 5.587 19 Si 0.774 3.226 20 H -0.209 1.209 21 H -0.246 1.246 22 H -0.121 1.121 23 C -0.124 4.124 24 C 0.037 3.963 25 O -0.228 6.228 26 C -0.088 4.088 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.198 0.802 31 H 0.248 0.752 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.187 0.813 42 H 0.142 0.858 43 H 0.088 0.912 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.962 -25.571 -0.742 30.153 hybrid contribution 0.846 0.924 -0.211 1.270 sum -15.116 -24.646 -0.953 28.929 Atomic orbital electron populations 1.23562 0.75621 1.06417 1.02931 1.86182 1.23982 1.24528 1.87337 1.18225 0.89143 0.85277 0.96300 1.21065 1.02629 0.88537 1.10854 1.17504 0.87648 0.82534 0.99798 1.91558 1.76297 1.49883 1.93132 1.19626 0.92566 0.93503 1.12992 1.18300 0.82652 0.88613 0.76472 1.90814 1.65480 1.37762 1.51751 1.45877 1.05429 1.10328 1.73692 1.21120 0.92471 0.83231 0.99913 1.18657 0.90511 0.94305 0.93810 1.22243 1.01112 0.98894 0.97746 1.22316 0.99765 0.99895 0.98581 1.21021 0.91709 0.91859 1.51192 0.95630 1.25910 0.99037 0.99343 0.93957 1.70122 1.09860 1.29327 1.49381 0.86323 0.75701 0.82326 0.78203 1.20851 1.24577 1.12110 1.21160 1.01316 0.88744 1.01188 1.18119 0.88718 0.86318 1.03163 1.86197 1.20838 1.26893 1.88833 1.23530 0.76269 1.06203 1.02787 0.85601 0.91029 0.91026 0.80196 0.75162 0.93689 0.93898 0.91279 0.93305 0.94109 0.93485 0.94358 0.90588 0.92670 0.81299 0.85826 0.91178 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.31 -5.04 10.26 -77.23 -0.79 -5.83 16 3 C 0.16 2.97 6.71 22.68 0.15 3.12 16 4 C -0.21 -3.94 8.99 22.35 0.20 -3.74 16 5 C 0.15 3.82 7.28 22.65 0.16 3.99 16 6 F -0.13 -4.15 15.53 44.97 0.70 -3.45 16 7 C -0.18 -4.89 5.88 -20.05 -0.12 -5.00 16 8 C 0.55 18.92 7.76 86.67 0.67 19.59 16 9 O -0.58 -25.18 15.32 -4.03 -0.06 -25.24 16 10 N -0.70 -21.96 4.95 -466.36 -2.31 -24.27 16 11 C 0.16 6.27 4.49 86.38 0.39 6.66 16 12 C 0.03 1.17 0.50 -52.92 -0.03 1.15 16 13 C -0.14 -5.16 7.53 71.98 0.54 -4.62 16 14 C -0.15 -5.31 7.52 71.99 0.54 -4.77 16 15 C -0.52 -28.47 8.62 25.60 0.22 -28.25 16 16 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 17 C 0.01 0.83 5.32 84.66 0.45 1.28 16 18 N -0.95 -58.62 13.96 21.45 0.30 -58.33 16 19 Si 0.95 41.45 22.79 68.60 1.56 43.01 16 20 H -0.28 -12.09 7.10 99.48 0.71 -11.38 16 21 H -0.32 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.20 -7.05 4.65 99.48 0.46 -6.59 16 23 C -0.10 -2.07 8.52 22.61 0.19 -1.87 16 24 C 0.08 1.61 6.69 22.51 0.15 1.76 16 25 O -0.31 -5.55 10.28 -80.02 -0.82 -6.37 16 26 C 0.01 0.06 9.81 113.37 1.11 1.17 16 27 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 29 H 0.07 0.39 7.65 -2.39 -0.02 0.38 16 30 H 0.18 2.23 6.27 -2.91 -0.02 2.21 16 31 H 0.41 9.74 4.28 -92.71 -0.40 9.35 16 32 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.82 7.13 -2.38 -0.02 1.81 16 35 H 0.05 1.86 4.30 -2.39 -0.01 1.85 16 36 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 1.41 2.25 -2.39 -0.01 1.41 16 39 H 0.08 1.97 6.86 -2.39 -0.02 1.96 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.17 2.43 4.61 -2.91 -0.01 2.41 16 42 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 44 H 0.07 0.59 7.66 -2.38 -0.02 0.57 16 Total: -1.00 -77.97 348.82 4.75 -73.23 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.42 Total: 15.63 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.76 Total: -8.37 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.01 Total: -82.60 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.68 Total: -37.44 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.70 Total: -3.45 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.56 Total: 43.01 kcal Total: -77.97 4.75 -73.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.170 kcal (2) G-P(sol) polarization free energy of solvation -77.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds