Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47067 * 2 1 4 4 O 1.33911 * 125.11669 * 270.17763 * 3 2 1 5 5 C 1.34926 * 111.37077 * 180.26996 * 4 3 2 6 6 C 1.38973 * 133.04792 * 179.72604 * 5 4 3 7 7 C 1.37847 * 119.97418 * 180.02562 * 6 5 4 8 8 C 1.38677 * 120.65417 * 0.02562 * 7 6 5 9 9 C 1.37856 * 120.19350 * 359.95670 * 8 7 6 10 10 C 1.39088 * 119.63409 * 0.04607 * 9 8 7 11 11 C 1.36408 * 125.11224 * 90.00476 * 3 2 1 12 12 C 1.46493 * 127.16355 * 0.02562 * 11 3 2 13 13 C 1.35482 * 119.99792 * 120.49925 * 12 11 3 14 14 C 1.41435 * 119.99549 * 352.81944 * 13 12 11 15 15 O 1.21823 * 120.00378 * 353.99873 * 14 13 12 16 16 N 1.34776 * 119.99828 * 174.00060 * 14 13 12 17 17 C 1.36803 * 120.00285 * 183.75272 * 16 14 13 18 18 H 1.07999 * 119.99799 * 16.23048 * 17 16 14 19 19 C 1.39040 * 120.00009 * 196.23313 * 17 16 14 20 20 N 1.31377 * 120.00042 * 17.48884 * 19 17 16 21 21 Si 1.86802 * 119.99955 * 197.49008 * 19 17 16 22 22 H 1.48503 * 109.47104 * 59.99790 * 21 19 17 23 23 H 1.48500 * 109.47130 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46987 * 299.99830 * 21 19 17 25 25 C 1.46505 * 120.00056 * 3.74773 * 16 14 13 26 26 C 1.53001 * 117.49882 * 309.03035 * 25 16 14 27 27 C 1.52986 * 117.50417 * 240.40323 * 25 16 14 28 28 H 1.09009 * 109.46776 * 59.99924 * 1 2 3 29 29 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47018 * 300.00396 * 1 2 3 31 31 H 1.09000 * 109.47068 * 240.00142 * 2 1 3 32 32 H 1.08999 * 109.47215 * 120.00421 * 2 1 3 33 33 H 1.07992 * 120.00989 * 0.04484 * 6 5 4 34 34 H 1.08009 * 119.66969 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.89941 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.18084 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.00255 * 300.49235 * 12 11 3 38 38 H 1.07991 * 120.00123 * 173.09825 * 13 12 11 39 39 H 0.97001 * 120.00084 * 180.02562 * 20 19 17 40 40 H 1.09008 * 115.54891 * 94.72962 * 25 16 14 41 41 H 1.08993 * 117.50016 * 359.97438 * 26 25 16 42 42 H 1.08995 * 117.49845 * 145.01631 * 26 25 16 43 43 H 1.09005 * 117.50379 * 214.98119 * 27 25 16 44 44 H 1.09002 * 117.49806 * 359.97180 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2859 2.1482 -1.0954 5 6 2.7293 3.3816 -0.7748 6 6 3.1215 4.4762 -1.5359 7 6 3.5385 5.6336 -0.9140 8 6 3.5724 5.7200 0.4697 9 6 3.1867 4.6446 1.2411 10 6 2.7643 3.4718 0.6241 11 6 2.2940 2.1605 1.1159 12 6 2.1459 1.7399 2.5112 13 6 3.2197 1.7435 3.3374 14 6 4.5094 2.0060 2.8195 15 8 4.6715 2.1204 1.6176 16 7 5.5590 2.1295 3.6559 17 6 6.7917 2.4592 3.1625 18 1 6.8827 2.8728 2.1690 19 6 7.9273 2.2617 3.9401 20 7 7.8794 1.4623 4.9815 21 14 9.5210 3.1332 3.5040 22 1 9.3090 4.6024 3.5451 23 1 10.5739 2.7579 4.4817 24 1 9.9468 2.7324 2.1390 25 6 5.3800 1.9109 5.0934 26 6 4.2425 2.6640 5.7862 27 6 5.6949 3.0787 6.0302 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0993 4.4202 -2.6141 34 1 3.8419 6.4815 -1.5103 35 1 3.9017 6.6326 0.9442 36 1 3.2136 4.7119 2.3187 37 1 1.1808 1.4269 2.8815 38 1 3.0914 1.5417 4.3905 39 1 8.6716 1.3248 5.5242 40 1 5.6078 0.9056 5.4480 41 1 3.6277 3.3224 5.1726 42 1 3.7217 2.1543 6.5967 43 1 6.1296 2.8418 7.0014 44 1 6.0358 4.0096 5.5771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491200810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = 59.685885 kcal Electronic energy + Delta-G solvation = -28129.655260 eV Core-core repulsion = 24401.720531 eV Total energy + Delta-G solvation = -3727.934729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86693 -39.01538 -37.37489 -36.28468 -34.48435 -33.34569 -32.52850 -31.17484 -30.62691 -29.75057 -28.07324 -25.57677 -24.03281 -23.00132 -22.31984 -21.51594 -21.45582 -20.70222 -19.91429 -17.89704 -17.07877 -16.81994 -16.29100 -15.71596 -15.45036 -15.12817 -15.09267 -14.31198 -14.14046 -14.02958 -13.76478 -13.49384 -13.24671 -13.07940 -12.80410 -12.63273 -12.30418 -12.26281 -11.78495 -11.61663 -11.48831 -11.44566 -11.11443 -11.10521 -10.93419 -10.80638 -10.49662 -10.42293 -10.36232 -9.88534 -9.74298 -9.33587 -8.90545 -8.54892 -8.25722 -7.98396 -7.68688 -7.24613 -6.37134 -3.78450 1.38865 1.78153 1.95111 2.98128 3.19081 3.20495 3.22138 3.26877 4.10434 4.26287 4.45394 4.64030 4.78921 4.85399 5.12674 5.13451 5.22720 5.29442 5.34658 5.36633 5.49309 5.62568 5.72762 5.74327 5.78608 5.82261 5.87575 5.93080 5.95778 6.07923 6.11254 6.18628 6.18829 6.29500 6.35169 6.65101 6.69722 6.76033 6.82225 6.85267 6.90467 6.92743 7.10114 7.18525 7.20549 7.53128 7.74622 8.11587 8.50907 9.21537 9.43250 10.06895 10.66168 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.004794 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.996220 B = 5839.002843 C = 6784.672782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C 0.018 3.982 4 O -0.197 6.197 5 C 0.049 3.951 6 C -0.114 4.114 7 C -0.106 4.106 8 C -0.142 4.142 9 C -0.054 4.054 10 C -0.063 4.063 11 C -0.092 4.092 12 C -0.069 4.069 13 C -0.161 4.161 14 C 0.458 3.542 15 O -0.571 6.571 16 N -0.409 5.409 17 C -0.297 4.297 18 H 0.102 0.898 19 C 0.037 3.963 20 N -0.862 5.862 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.133 3.867 26 C -0.224 4.224 27 C -0.153 4.153 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.268 0.732 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 1.832 -2.670 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.030 4.030 4 O -0.100 6.100 5 C 0.002 3.998 6 C -0.133 4.133 7 C -0.124 4.124 8 C -0.160 4.160 9 C -0.072 4.072 10 C -0.064 4.064 11 C -0.093 4.093 12 C -0.090 4.090 13 C -0.182 4.182 14 C 0.251 3.749 15 O -0.457 6.457 16 N -0.126 5.126 17 C -0.425 4.425 18 H 0.120 0.880 19 C -0.168 4.168 20 N -0.499 5.499 21 Si 0.746 3.254 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.028 3.972 26 C -0.262 4.262 27 C -0.191 4.191 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.899 1.722 -3.351 12.482 hybrid contribution 1.276 0.385 0.356 1.379 sum -10.624 2.107 -2.994 11.237 Atomic orbital electron populations 1.21777 0.94271 1.01929 1.02470 1.20055 0.95819 0.87702 1.04142 1.22288 1.03517 0.94055 0.83121 1.83662 1.70195 1.22042 1.34060 1.19407 1.01579 0.85184 0.93639 1.19746 1.04097 0.90544 0.98888 1.20689 1.00441 0.96664 0.94650 1.20880 1.02704 0.98771 0.93694 1.20346 0.96206 0.91198 0.99495 1.19430 1.00682 0.94005 0.92260 1.19377 1.03934 0.92965 0.93046 1.21284 0.97491 0.99627 0.90646 1.22736 0.94119 1.01383 0.99952 1.16706 0.85120 0.86188 0.86846 1.90751 1.84906 1.55962 1.14121 1.43242 1.08154 1.57721 1.03510 1.19613 0.81929 1.38548 1.02402 0.88035 1.25228 0.99196 0.96112 0.96286 1.69916 1.30336 1.32146 1.17538 0.86104 0.80919 0.79963 0.78464 1.19924 1.20911 1.19807 1.21210 0.97720 0.96790 0.81515 1.23613 0.92735 1.05911 1.03926 1.22805 0.95275 1.00381 1.00655 0.92472 0.91872 0.92192 0.90277 0.88819 0.86006 0.85640 0.86104 0.86615 0.85986 0.85435 0.92121 0.86775 0.89357 0.89169 0.89619 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.04 -0.54 6.26 -27.88 -0.17 -0.71 16 3 C 0.02 0.31 6.57 -34.97 -0.23 0.08 16 4 O -0.20 -3.79 10.53 5.01 0.05 -3.74 16 5 C 0.05 0.95 7.38 -38.56 -0.28 0.67 16 6 C -0.11 -1.91 10.06 -39.45 -0.40 -2.30 16 7 C -0.11 -1.64 10.01 -39.56 -0.40 -2.03 16 8 C -0.14 -2.38 10.04 -39.56 -0.40 -2.77 16 9 C -0.05 -1.05 9.52 -39.41 -0.38 -1.42 16 10 C -0.06 -1.28 4.50 -104.96 -0.47 -1.75 16 11 C -0.09 -1.77 4.12 -103.35 -0.43 -2.19 16 12 C -0.07 -1.19 9.67 -37.24 -0.36 -1.55 16 13 C -0.16 -3.11 8.03 -39.35 -0.32 -3.42 16 14 C 0.46 11.07 7.04 -15.04 -0.11 10.96 16 15 O -0.57 -15.50 11.94 5.08 0.06 -15.44 16 16 N -0.41 -10.24 2.93 -111.00 -0.33 -10.56 16 17 C -0.30 -8.14 9.22 -15.04 -0.14 -8.27 16 18 H 0.10 2.99 7.36 -52.49 -0.39 2.60 16 19 C 0.04 0.96 4.86 -17.45 -0.08 0.87 16 20 N -0.86 -22.08 10.52 55.50 0.58 -21.49 16 21 Si 0.92 20.61 29.59 -169.99 -5.03 15.58 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.13 2.89 3.58 -67.93 -0.24 2.64 16 26 C -0.22 -3.87 7.83 -26.73 -0.21 -4.08 16 27 C -0.15 -3.03 9.14 -26.74 -0.24 -3.28 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.24 7.87 -51.93 -0.41 0.83 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.13 2.16 5.20 -52.49 -0.27 1.89 16 39 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.11 2.62 7.65 -51.92 -0.40 2.22 16 41 H 0.09 1.53 7.07 -51.93 -0.37 1.16 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -31.48 365.31 -9.68 -41.16 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.04 Total: 8.72 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -4.49 Total: -19.72 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.26 Total: -32.05 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.11 Total: -19.18 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.48 -9.68 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491200810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.842 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds