Wall clock time and date at job start Tue Mar 31 2020 14:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47067 * 2 1 4 4 O 1.33911 * 125.11669 * 270.17763 * 3 2 1 5 5 C 1.34926 * 111.37077 * 180.26996 * 4 3 2 6 6 C 1.38973 * 133.04792 * 179.72604 * 5 4 3 7 7 C 1.37847 * 119.97418 * 180.02562 * 6 5 4 8 8 C 1.38677 * 120.65417 * 0.02562 * 7 6 5 9 9 C 1.37856 * 120.19350 * 359.95670 * 8 7 6 10 10 C 1.39088 * 119.63409 * 0.04607 * 9 8 7 11 11 C 1.36408 * 125.11224 * 90.00476 * 3 2 1 12 12 C 1.46493 * 127.16355 * 0.02562 * 11 3 2 13 13 C 1.35482 * 119.99792 * 120.49925 * 12 11 3 14 14 C 1.41435 * 119.99549 * 352.81944 * 13 12 11 15 15 O 1.21823 * 120.00378 * 353.99873 * 14 13 12 16 16 N 1.34776 * 119.99828 * 174.00060 * 14 13 12 17 17 C 1.36803 * 120.00285 * 183.75272 * 16 14 13 18 18 H 1.07999 * 119.99799 * 16.23048 * 17 16 14 19 19 C 1.39040 * 120.00009 * 196.23313 * 17 16 14 20 20 N 1.31377 * 120.00042 * 17.48884 * 19 17 16 21 21 Si 1.86802 * 119.99955 * 197.49008 * 19 17 16 22 22 H 1.48503 * 109.47104 * 59.99790 * 21 19 17 23 23 H 1.48500 * 109.47130 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46987 * 299.99830 * 21 19 17 25 25 C 1.46505 * 120.00056 * 3.74773 * 16 14 13 26 26 C 1.53001 * 117.49882 * 309.03035 * 25 16 14 27 27 C 1.52986 * 117.50417 * 240.40323 * 25 16 14 28 28 H 1.09009 * 109.46776 * 59.99924 * 1 2 3 29 29 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47018 * 300.00396 * 1 2 3 31 31 H 1.09000 * 109.47068 * 240.00142 * 2 1 3 32 32 H 1.08999 * 109.47215 * 120.00421 * 2 1 3 33 33 H 1.07992 * 120.00989 * 0.04484 * 6 5 4 34 34 H 1.08009 * 119.66969 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.89941 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.18084 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.00255 * 300.49235 * 12 11 3 38 38 H 1.07991 * 120.00123 * 173.09825 * 13 12 11 39 39 H 0.97001 * 120.00084 * 180.02562 * 20 19 17 40 40 H 1.09008 * 115.54891 * 94.72962 * 25 16 14 41 41 H 1.08993 * 117.50016 * 359.97438 * 26 25 16 42 42 H 1.08995 * 117.49845 * 145.01631 * 26 25 16 43 43 H 1.09005 * 117.50379 * 214.98119 * 27 25 16 44 44 H 1.09002 * 117.49806 * 359.97180 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2859 2.1482 -1.0954 5 6 2.7293 3.3816 -0.7748 6 6 3.1215 4.4762 -1.5359 7 6 3.5385 5.6336 -0.9140 8 6 3.5724 5.7200 0.4697 9 6 3.1867 4.6446 1.2411 10 6 2.7643 3.4718 0.6241 11 6 2.2940 2.1605 1.1159 12 6 2.1459 1.7399 2.5112 13 6 3.2197 1.7435 3.3374 14 6 4.5094 2.0060 2.8195 15 8 4.6715 2.1204 1.6176 16 7 5.5590 2.1295 3.6559 17 6 6.7917 2.4592 3.1625 18 1 6.8827 2.8728 2.1690 19 6 7.9273 2.2617 3.9401 20 7 7.8794 1.4623 4.9815 21 14 9.5210 3.1332 3.5040 22 1 9.3090 4.6024 3.5451 23 1 10.5739 2.7579 4.4817 24 1 9.9468 2.7324 2.1390 25 6 5.3800 1.9109 5.0934 26 6 4.2425 2.6640 5.7862 27 6 5.6949 3.0787 6.0302 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0993 4.4202 -2.6141 34 1 3.8419 6.4815 -1.5103 35 1 3.9017 6.6326 0.9442 36 1 3.2136 4.7119 2.3187 37 1 1.1808 1.4269 2.8815 38 1 3.0914 1.5417 4.3905 39 1 8.6716 1.3248 5.5242 40 1 5.6078 0.9056 5.4480 41 1 3.6277 3.3224 5.1726 42 1 3.7217 2.1543 6.5967 43 1 6.1296 2.8418 7.0014 44 1 6.0358 4.0096 5.5771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491200810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:11 Heat of formation + Delta-G solvation = 43.721427 kcal Electronic energy + Delta-G solvation = -28130.347531 eV Core-core repulsion = 24401.720531 eV Total energy + Delta-G solvation = -3728.627000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.26041 -40.76230 -38.71031 -37.97675 -35.89091 -34.97559 -33.92338 -33.01212 -32.08222 -31.13681 -29.37304 -27.38430 -25.26953 -24.51781 -23.66933 -23.15885 -22.94670 -22.05754 -21.41348 -19.49764 -18.87729 -18.32828 -17.65779 -17.22183 -17.07216 -16.80698 -16.37790 -15.99523 -15.72946 -15.35576 -15.02627 -14.92870 -14.71029 -14.63772 -14.32809 -13.96535 -13.87541 -13.44747 -13.32770 -13.02867 -12.93981 -12.83363 -12.70106 -12.44769 -12.35310 -12.26234 -12.17034 -11.99889 -11.77857 -11.61325 -11.27433 -10.90133 -10.63085 -10.12453 -9.90547 -9.63950 -9.36533 -8.67211 -8.29457 -5.81750 0.01288 0.35049 0.54050 1.36753 1.37161 1.45795 1.60124 1.86821 2.26694 2.63248 2.87767 3.03037 3.19465 3.31553 3.55102 3.77122 4.05923 4.09617 4.13771 4.18232 4.22263 4.27712 4.36808 4.38424 4.44843 4.54572 4.61877 4.63077 4.72096 4.76981 4.86158 4.96714 5.02634 5.08653 5.10067 5.30716 5.32279 5.37652 5.39445 5.44089 5.44673 5.46726 5.55043 5.57572 5.72788 5.85127 6.15164 6.34596 6.60733 7.27391 7.58121 8.21195 8.70960 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.004794 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.996220 B = 5839.002843 C = 6784.672782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C 0.020 3.980 4 O -0.208 6.208 5 C 0.014 3.986 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.143 4.143 9 C -0.086 4.086 10 C -0.087 4.087 11 C -0.133 4.133 12 C -0.028 4.028 13 C -0.190 4.190 14 C 0.458 3.542 15 O -0.611 6.611 16 N -0.427 5.427 17 C -0.334 4.334 18 H 0.063 0.937 19 C 0.012 3.988 20 N -0.872 5.872 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.268 1.268 24 H -0.282 1.282 25 C 0.106 3.894 26 C -0.178 4.178 27 C -0.157 4.157 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.272 0.728 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 1.950 -2.234 14.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 C -0.027 4.027 4 O -0.111 6.111 5 C -0.032 4.032 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.161 4.161 9 C -0.104 4.104 10 C -0.088 4.088 11 C -0.135 4.135 12 C -0.049 4.049 13 C -0.210 4.210 14 C 0.252 3.748 15 O -0.499 6.499 16 N -0.145 5.145 17 C -0.462 4.462 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.510 5.510 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.192 1.192 24 H -0.208 1.208 25 C 0.002 3.998 26 C -0.215 4.215 27 C -0.195 4.195 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.163 0.837 36 H 0.122 0.878 37 H 0.188 0.812 38 H 0.171 0.829 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.150 0.850 43 H 0.115 0.885 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.719 1.837 -2.886 14.139 hybrid contribution 1.717 0.359 0.045 1.755 sum -12.002 2.196 -2.842 12.528 Atomic orbital electron populations 1.21741 0.91491 1.03767 1.02584 1.20302 0.98074 0.84917 1.04615 1.23145 1.01746 0.95327 0.82521 1.83648 1.70365 1.22264 1.34795 1.19938 1.03120 0.86015 0.94106 1.20257 1.02945 0.90030 1.00373 1.21188 0.98951 0.97472 0.94420 1.21293 1.01352 0.98892 0.94578 1.20478 0.98267 0.92295 0.99343 1.19749 1.01216 0.94774 0.93064 1.19794 1.05782 0.93430 0.94464 1.21850 0.98761 0.95019 0.89265 1.22619 0.92159 1.04652 1.01567 1.17493 0.86635 0.84269 0.86383 1.90716 1.86002 1.57202 1.16006 1.43335 1.07535 1.58533 1.05056 1.19335 0.84103 1.40976 1.01775 0.91871 1.25744 1.01000 0.96265 0.96209 1.69984 1.30963 1.32236 1.17779 0.85348 0.78205 0.79023 0.77907 1.19733 1.19201 1.20819 1.21131 1.02003 0.96592 0.80117 1.23655 0.91251 1.03491 1.03130 1.22745 0.97814 0.98585 1.00390 0.92764 0.89121 0.91713 0.89634 0.88495 0.83258 0.81453 0.83686 0.87752 0.81162 0.82852 0.91814 0.88477 0.89196 0.85033 0.88452 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.04 -1.07 6.26 29.85 0.19 -0.88 16 3 C 0.02 0.71 6.57 25.26 0.17 0.88 16 4 O -0.21 -8.10 10.53 -4.98 -0.05 -8.15 16 5 C 0.01 0.58 7.38 22.93 0.17 0.75 16 6 C -0.12 -3.85 10.06 22.35 0.22 -3.63 16 7 C -0.10 -3.01 10.01 22.28 0.22 -2.79 16 8 C -0.14 -4.75 10.04 22.28 0.22 -4.52 16 9 C -0.09 -3.40 9.52 22.38 0.21 -3.19 16 10 C -0.09 -3.63 4.50 -20.08 -0.09 -3.72 16 11 C -0.13 -5.13 4.12 -19.04 -0.08 -5.21 16 12 C -0.03 -0.92 9.67 23.79 0.23 -0.69 16 13 C -0.19 -7.19 8.03 22.42 0.18 -7.01 16 14 C 0.46 22.85 7.04 85.03 0.60 23.44 16 15 O -0.61 -34.78 11.94 -4.74 -0.06 -34.84 16 16 N -0.43 -22.21 2.93 -623.25 -1.83 -24.04 16 17 C -0.33 -19.28 9.22 84.11 0.78 -18.51 16 18 H 0.06 4.02 7.36 -2.91 -0.02 4.00 16 19 C 0.01 0.63 4.86 84.95 0.41 1.05 16 20 N -0.87 -45.53 10.52 21.68 0.23 -45.31 16 21 Si 0.97 43.38 29.59 68.60 2.03 45.41 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 C 0.11 4.65 3.58 44.99 0.16 4.81 16 26 C -0.18 -5.80 7.83 30.59 0.24 -5.56 16 27 C -0.16 -6.19 9.14 30.59 0.28 -5.91 16 28 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.10 2.39 7.87 -2.39 -0.02 2.37 16 33 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 34 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 37 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.15 4.88 5.20 -2.92 -0.02 4.86 16 39 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 40 H 0.10 4.52 7.65 -2.38 -0.02 4.50 16 41 H 0.09 2.95 7.07 -2.39 -0.02 2.94 16 42 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 44 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -74.29 365.31 6.16 -68.13 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 1.01 Total: 31.29 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 4.83 Total: -32.50 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.60 Total: -69.34 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.11 Total: -42.99 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.29 6.16 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491200810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.853 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds