Wall clock time and date at job start Tue Mar 31 2020 13:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.94076 * 2 1 4 4 C 1.38140 * 120.05416 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.94770 * 359.97438 * 4 3 2 6 6 O 1.35904 * 120.06091 * 180.02562 * 5 4 3 7 7 C 1.42895 * 116.99707 * 355.08316 * 6 5 4 8 8 H 1.09000 * 109.47488 * 328.46444 * 7 6 5 9 9 C 1.53008 * 109.47079 * 88.46028 * 7 6 5 10 10 C 1.50701 * 109.47254 * 208.46193 * 7 6 5 11 11 O 1.21287 * 119.99706 * 359.97438 * 10 7 6 12 12 N 1.34771 * 119.99875 * 180.02562 * 10 7 6 13 13 C 1.39133 * 119.99937 * 185.12849 * 12 10 7 14 14 C 1.38647 * 120.28295 * 327.47637 * 13 12 10 15 15 C 1.38218 * 120.03380 * 180.29830 * 14 13 12 16 16 C 1.38866 * 120.61640 * 359.43859 * 15 14 13 17 17 C 1.36467 * 120.57443 * 0.56140 * 16 15 14 18 18 C 1.40737 * 119.94357 * 359.72125 * 17 16 15 19 19 C 1.41067 * 120.29883 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99699 * 144.68797 * 19 18 17 21 21 C 1.39958 * 120.00601 * 324.68991 * 19 18 17 22 22 N 1.30855 * 119.99666 * 357.81950 * 21 19 18 23 23 Si 1.86799 * 120.00272 * 177.81895 * 21 19 18 24 24 H 1.48505 * 109.47170 * 59.99776 * 23 21 19 25 25 H 1.48501 * 109.47274 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47183 * 300.00061 * 23 21 19 27 27 C 1.38736 * 119.88526 * 0.27405 * 5 4 3 28 28 C 1.38141 * 119.94129 * 359.42707 * 27 5 4 29 29 H 1.09008 * 109.46874 * 90.00413 * 1 2 3 30 30 H 1.08999 * 109.47062 * 210.00011 * 1 2 3 31 31 H 1.08992 * 109.47662 * 330.00776 * 1 2 3 32 32 H 1.08003 * 119.97028 * 359.96872 * 3 2 1 33 33 H 1.08004 * 120.02725 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.47079 * 179.97438 * 9 7 6 35 35 H 1.08993 * 109.46918 * 300.00075 * 9 7 6 36 36 H 1.09000 * 109.46620 * 59.99885 * 9 7 6 37 37 H 0.96997 * 120.00460 * 5.12431 * 12 10 7 38 38 H 1.08005 * 119.98011 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.69413 * 179.69885 * 15 14 13 40 40 H 1.08002 * 119.71474 * 180.30957 * 16 15 14 41 41 H 1.08002 * 120.02874 * 179.74248 * 17 16 15 42 42 H 0.97001 * 119.99625 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.02599 * 179.72002 * 27 5 4 44 44 H 1.08009 * 119.97305 * 180.27589 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0002 0.0016 6 8 5.6325 0.0002 0.0027 7 6 6.2812 1.2687 -0.1065 8 1 5.6662 1.9411 -0.7046 9 6 6.4771 1.8632 1.2897 10 6 7.6228 1.0914 -0.7698 11 8 7.9876 -0.0127 -1.1146 12 7 8.4175 2.1596 -0.9789 13 6 9.6071 2.0139 -1.6856 14 6 10.3271 0.8317 -1.6063 15 6 11.5114 0.6948 -2.3057 16 6 11.9866 1.7291 -3.1012 17 6 11.2981 2.9034 -3.1974 18 6 10.0925 3.0708 -2.4909 19 6 9.3744 4.2813 -2.5854 20 1 8.2946 4.2712 -2.5703 21 6 10.0612 5.4955 -2.6986 22 7 11.3694 5.5119 -2.6740 23 14 9.1105 7.0926 -2.8850 24 1 8.2317 7.2864 -1.7036 25 1 10.0633 8.2273 -2.9839 26 1 8.2804 7.0340 -4.1149 27 6 3.5786 -1.2006 -0.0036 28 6 2.1973 -1.1980 0.0021 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6556 2.1327 -0.0005 33 1 4.1171 2.1370 0.0001 34 1 6.9724 2.8307 1.2064 35 1 5.5068 1.9914 1.7693 36 1 7.0921 1.1908 1.8878 37 1 8.1602 3.0300 -0.6367 38 1 9.9646 0.0190 -0.9943 39 1 12.0703 -0.2267 -2.2362 40 1 12.9112 1.6046 -3.6454 41 1 11.6779 3.7036 -3.8155 42 1 11.8454 6.3535 -2.7521 43 1 4.1174 -2.1367 -0.0074 44 1 1.6558 -2.1326 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516890960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:38 Heat of formation + Delta-G solvation = -30.032329 kcal Electronic energy + Delta-G solvation = -26489.924611 eV Core-core repulsion = 22758.099408 eV Total energy + Delta-G solvation = -3731.825203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61507 -39.46550 -37.89694 -36.93005 -33.95252 -33.65342 -32.60182 -31.55480 -30.89344 -29.63288 -28.32242 -26.60486 -25.35886 -24.43544 -23.09264 -21.83328 -21.23407 -20.59931 -19.33371 -18.39105 -17.60244 -17.06566 -16.04197 -15.70628 -15.59295 -15.45268 -15.13933 -14.47759 -14.44439 -14.13669 -13.95881 -13.76388 -13.62292 -13.14028 -13.08088 -12.76882 -12.55613 -12.38754 -12.31860 -12.12591 -11.81234 -11.66358 -11.64866 -11.31325 -11.22563 -11.03101 -10.95266 -10.77329 -10.53643 -10.15734 -9.80162 -9.33181 -9.26911 -9.12925 -8.83514 -8.11375 -7.35942 -7.01157 -6.68922 -4.48721 1.21151 1.30108 2.52048 2.81005 2.87375 3.01094 3.02331 3.15100 3.31143 3.62814 3.86740 3.96015 4.61214 4.62997 4.66497 4.73031 4.86082 4.89840 5.04834 5.10318 5.20755 5.32021 5.39772 5.52314 5.55388 5.58508 5.59692 5.73680 5.91359 5.98486 6.17800 6.25399 6.29621 6.46567 6.47446 6.54165 6.65821 6.88213 7.01659 7.12050 7.22714 7.35520 7.61995 7.65190 7.91811 8.04018 8.06961 8.34376 8.50519 8.74771 8.79453 8.94483 10.19368 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003119 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.594725 B = 8975.510206 C =10513.099148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.079 4.079 4 C -0.209 4.209 5 C 0.131 3.869 6 O -0.283 6.283 7 C 0.067 3.933 8 H 0.099 0.901 9 C -0.175 4.175 10 C 0.501 3.499 11 O -0.517 6.517 12 N -0.630 5.630 13 C 0.021 3.979 14 C -0.095 4.095 15 C -0.215 4.215 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.101 3.899 19 C -0.475 4.475 20 H 0.074 0.926 21 C 0.075 3.925 22 N -0.806 5.806 23 Si 0.911 3.089 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.147 4.147 28 C -0.081 4.081 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.404 0.596 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.280 0.720 43 H 0.132 0.868 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.018 -3.477 6.666 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.133 4.133 3 C -0.097 4.097 4 C -0.228 4.228 5 C 0.085 3.915 6 O -0.195 6.195 7 C 0.007 3.993 8 H 0.117 0.883 9 C -0.232 4.232 10 C 0.286 3.714 11 O -0.393 6.393 12 N -0.274 5.274 13 C -0.072 4.072 14 C -0.115 4.115 15 C -0.235 4.235 16 C -0.137 4.137 17 C -0.156 4.156 18 C 0.098 3.902 19 C -0.506 4.506 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.433 5.433 23 Si 0.736 3.264 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.166 4.166 28 C -0.099 4.099 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.240 0.760 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.454 -4.256 6.430 17.271 hybrid contribution -0.428 1.536 0.042 1.595 sum -15.881 -2.720 6.472 17.364 Atomic orbital electron populations 1.20699 0.91216 1.02451 1.02060 1.19809 0.96120 0.93106 1.04238 1.20810 0.93215 0.97662 0.98054 1.21322 0.95406 0.97334 1.08721 1.19120 0.82513 0.94254 0.95566 1.86218 1.15768 1.30282 1.87234 1.22265 0.93433 0.85275 0.98346 0.88331 1.22322 1.03695 1.02036 0.95161 1.20000 0.85238 0.85572 0.80588 1.90677 1.73552 1.24692 1.50360 1.42719 1.20331 1.10833 1.53500 1.17829 0.89238 0.98651 1.01485 1.20772 0.94014 0.96592 1.00083 1.20389 0.98607 0.98925 1.05562 1.20535 0.98822 0.94577 0.99750 1.20983 0.97061 0.96212 1.01367 1.17416 0.93124 0.91391 0.88287 1.19235 0.94219 0.90365 1.46763 0.90810 1.25829 0.94920 1.00942 0.92409 1.69763 1.07632 1.28802 1.37070 0.86320 0.79941 0.80319 0.79799 1.19124 1.20352 1.19030 1.20460 0.93700 0.96512 1.05933 1.20825 0.92903 0.97722 0.98460 0.91527 0.91799 0.91829 0.85877 0.85110 0.89954 0.90943 0.90629 0.75999 0.86788 0.89020 0.89215 0.85919 0.90900 0.85040 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.13 -1.31 5.88 -104.60 -0.62 -1.92 16 3 C -0.08 -0.82 9.69 -39.61 -0.38 -1.20 16 4 C -0.21 -2.46 8.44 -39.44 -0.33 -2.80 16 5 C 0.13 1.81 6.64 -39.22 -0.26 1.55 16 6 O -0.28 -4.56 9.32 -39.35 -0.37 -4.93 16 7 C 0.07 0.98 2.64 -27.88 -0.07 0.91 16 8 H 0.10 1.27 6.05 -51.93 -0.31 0.95 16 9 C -0.17 -2.04 9.18 37.16 0.34 -1.70 16 10 C 0.50 9.69 7.09 -10.99 -0.08 9.61 16 11 O -0.52 -12.01 13.76 -14.36 -0.20 -12.21 16 12 N -0.63 -12.58 4.92 -9.47 -0.05 -12.63 16 13 C 0.02 0.51 6.38 -83.17 -0.53 -0.02 16 14 C -0.09 -2.28 8.71 -39.44 -0.34 -2.63 16 15 C -0.22 -5.00 10.04 -39.36 -0.39 -5.39 16 16 C -0.12 -2.77 9.97 -39.99 -0.40 -3.17 16 17 C -0.14 -3.46 8.57 -39.28 -0.34 -3.80 16 18 C 0.10 2.58 5.52 -106.65 -0.59 1.99 16 19 C -0.47 -11.62 8.20 -37.87 -0.31 -11.93 16 20 H 0.07 1.70 7.62 -52.49 -0.40 1.30 16 21 C 0.08 1.78 5.35 -17.32 -0.09 1.69 16 22 N -0.81 -19.94 10.88 55.55 0.60 -19.34 16 23 Si 0.91 17.66 29.56 -169.99 -5.02 12.63 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 26 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 27 C -0.15 -1.83 9.99 -39.43 -0.39 -2.23 16 28 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.13 1.35 5.59 -52.48 -0.29 1.06 16 34 H 0.08 0.85 7.46 -51.93 -0.39 0.46 16 35 H 0.07 0.72 7.36 -51.93 -0.38 0.33 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 7.07 7.31 -40.82 -0.30 6.77 16 38 H 0.11 2.75 6.01 -52.48 -0.32 2.43 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.12 3.19 6.42 -52.49 -0.34 2.86 16 42 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 43 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -30.03 366.60 -9.98 -40.02 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.66 Total: 13.57 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -4.82 Total: -22.64 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.56 Total: -31.96 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.56 Total: -17.14 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.03 -9.98 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516890960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.986 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds