Wall clock time and date at job start Tue Mar 31 2020 13:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.94076 * 2 1 4 4 C 1.38140 * 120.05416 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.94770 * 359.97438 * 4 3 2 6 6 O 1.35904 * 120.06091 * 180.02562 * 5 4 3 7 7 C 1.42895 * 116.99707 * 355.08316 * 6 5 4 8 8 H 1.09000 * 109.47488 * 328.46444 * 7 6 5 9 9 C 1.53008 * 109.47079 * 88.46028 * 7 6 5 10 10 C 1.50701 * 109.47254 * 208.46193 * 7 6 5 11 11 O 1.21287 * 119.99706 * 359.97438 * 10 7 6 12 12 N 1.34771 * 119.99875 * 180.02562 * 10 7 6 13 13 C 1.39133 * 119.99937 * 185.12849 * 12 10 7 14 14 C 1.38647 * 120.28295 * 327.47637 * 13 12 10 15 15 C 1.38218 * 120.03380 * 180.29830 * 14 13 12 16 16 C 1.38866 * 120.61640 * 359.43859 * 15 14 13 17 17 C 1.36467 * 120.57443 * 0.56140 * 16 15 14 18 18 C 1.40737 * 119.94357 * 359.72125 * 17 16 15 19 19 C 1.41067 * 120.29883 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99699 * 144.68797 * 19 18 17 21 21 C 1.39958 * 120.00601 * 324.68991 * 19 18 17 22 22 N 1.30855 * 119.99666 * 357.81950 * 21 19 18 23 23 Si 1.86799 * 120.00272 * 177.81895 * 21 19 18 24 24 H 1.48505 * 109.47170 * 59.99776 * 23 21 19 25 25 H 1.48501 * 109.47274 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47183 * 300.00061 * 23 21 19 27 27 C 1.38736 * 119.88526 * 0.27405 * 5 4 3 28 28 C 1.38141 * 119.94129 * 359.42707 * 27 5 4 29 29 H 1.09008 * 109.46874 * 90.00413 * 1 2 3 30 30 H 1.08999 * 109.47062 * 210.00011 * 1 2 3 31 31 H 1.08992 * 109.47662 * 330.00776 * 1 2 3 32 32 H 1.08003 * 119.97028 * 359.96872 * 3 2 1 33 33 H 1.08004 * 120.02725 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.47079 * 179.97438 * 9 7 6 35 35 H 1.08993 * 109.46918 * 300.00075 * 9 7 6 36 36 H 1.09000 * 109.46620 * 59.99885 * 9 7 6 37 37 H 0.96997 * 120.00460 * 5.12431 * 12 10 7 38 38 H 1.08005 * 119.98011 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.69413 * 179.69885 * 15 14 13 40 40 H 1.08002 * 119.71474 * 180.30957 * 16 15 14 41 41 H 1.08002 * 120.02874 * 179.74248 * 17 16 15 42 42 H 0.97001 * 119.99625 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.02599 * 179.72002 * 27 5 4 44 44 H 1.08009 * 119.97305 * 180.27589 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0002 0.0016 6 8 5.6325 0.0002 0.0027 7 6 6.2812 1.2687 -0.1065 8 1 5.6662 1.9411 -0.7046 9 6 6.4771 1.8632 1.2897 10 6 7.6228 1.0914 -0.7698 11 8 7.9876 -0.0127 -1.1146 12 7 8.4175 2.1596 -0.9789 13 6 9.6071 2.0139 -1.6856 14 6 10.3271 0.8317 -1.6063 15 6 11.5114 0.6948 -2.3057 16 6 11.9866 1.7291 -3.1012 17 6 11.2981 2.9034 -3.1974 18 6 10.0925 3.0708 -2.4909 19 6 9.3744 4.2813 -2.5854 20 1 8.2946 4.2712 -2.5703 21 6 10.0612 5.4955 -2.6986 22 7 11.3694 5.5119 -2.6740 23 14 9.1105 7.0926 -2.8850 24 1 8.2317 7.2864 -1.7036 25 1 10.0633 8.2273 -2.9839 26 1 8.2804 7.0340 -4.1149 27 6 3.5786 -1.2006 -0.0036 28 6 2.1973 -1.1980 0.0021 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6556 2.1327 -0.0005 33 1 4.1171 2.1370 0.0001 34 1 6.9724 2.8307 1.2064 35 1 5.5068 1.9914 1.7693 36 1 7.0921 1.1908 1.8878 37 1 8.1602 3.0300 -0.6367 38 1 9.9646 0.0190 -0.9943 39 1 12.0703 -0.2267 -2.2362 40 1 12.9112 1.6046 -3.6454 41 1 11.6779 3.7036 -3.8155 42 1 11.8454 6.3535 -2.7521 43 1 4.1174 -2.1367 -0.0074 44 1 1.6558 -2.1326 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516890960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:37 Heat of formation + Delta-G solvation = -44.408087 kcal Electronic energy + Delta-G solvation = -26490.547990 eV Core-core repulsion = 22758.099408 eV Total energy + Delta-G solvation = -3732.448583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82905 -40.81973 -39.21920 -38.37805 -35.63472 -35.47343 -33.60553 -32.45174 -31.80899 -31.48899 -30.04378 -27.37133 -27.14320 -25.63180 -24.10487 -23.31781 -22.65901 -21.95993 -20.89770 -19.43115 -19.28391 -18.66959 -17.66362 -17.11618 -16.75635 -16.58952 -16.28693 -16.00406 -15.71921 -15.34891 -15.28875 -14.85213 -14.50274 -14.44979 -14.38539 -14.17714 -14.04743 -13.63240 -13.43763 -13.28400 -13.06644 -12.89444 -12.83800 -12.74470 -12.59515 -12.40142 -12.15082 -12.00673 -11.87149 -11.67044 -11.59987 -11.06242 -11.00983 -10.51658 -9.96253 -9.26988 -9.01543 -8.83256 -8.47975 -6.36495 0.37935 0.43594 0.77779 1.03942 1.44106 1.54185 1.54612 1.61212 1.71073 2.24498 2.65178 2.78526 2.81073 3.51220 3.65309 3.70100 3.84663 3.89991 3.97742 4.10717 4.33496 4.45957 4.48160 4.51862 4.59285 4.62931 4.70819 4.74737 4.84284 4.91428 5.05174 5.08798 5.11049 5.18116 5.19035 5.30126 5.38139 5.39806 5.40378 5.69066 5.76342 5.81419 5.86348 6.09304 6.14755 6.23732 6.38479 6.61597 6.69856 6.93662 6.98437 7.27637 8.42880 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003119 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.594725 B = 8975.510206 C =10513.099148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 C -0.084 4.084 4 C -0.213 4.213 5 C 0.099 3.901 6 O -0.312 6.312 7 C 0.077 3.923 8 H 0.121 0.879 9 C -0.167 4.167 10 C 0.498 3.502 11 O -0.562 6.562 12 N -0.625 5.625 13 C 0.016 3.984 14 C -0.111 4.111 15 C -0.220 4.220 16 C -0.121 4.121 17 C -0.160 4.160 18 C 0.075 3.925 19 C -0.493 4.493 20 H 0.083 0.917 21 C 0.035 3.965 22 N -0.837 5.837 23 Si 0.984 3.016 24 H -0.251 1.251 25 H -0.276 1.276 26 H -0.265 1.265 27 C -0.166 4.166 28 C -0.083 4.083 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.416 0.584 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.285 0.715 43 H 0.125 0.875 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.837 -2.017 7.369 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C -0.102 4.102 4 C -0.231 4.231 5 C 0.055 3.945 6 O -0.226 6.226 7 C 0.017 3.983 8 H 0.138 0.862 9 C -0.225 4.225 10 C 0.286 3.714 11 O -0.440 6.440 12 N -0.269 5.269 13 C -0.079 4.079 14 C -0.131 4.131 15 C -0.240 4.240 16 C -0.140 4.140 17 C -0.180 4.180 18 C 0.071 3.929 19 C -0.524 4.524 20 H 0.101 0.899 21 C -0.179 4.179 22 N -0.464 5.464 23 Si 0.805 3.195 24 H -0.175 1.175 25 H -0.201 1.201 26 H -0.190 1.190 27 C -0.185 4.185 28 C -0.101 4.101 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.143 0.857 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.296 -2.794 7.154 19.843 hybrid contribution 0.398 0.982 -0.186 1.075 sum -17.898 -1.812 6.968 19.292 Atomic orbital electron populations 1.20763 0.88922 1.03721 1.02910 1.20243 0.97833 0.92708 1.02362 1.21182 0.92766 0.99041 0.97190 1.21511 0.96225 0.96980 1.08426 1.19394 0.81597 0.95617 0.97921 1.86162 1.17403 1.30980 1.88053 1.22217 0.90624 0.85586 0.99857 0.86201 1.22321 1.05027 1.02092 0.93036 1.20879 0.86554 0.84470 0.79529 1.90643 1.74883 1.26354 1.52151 1.42675 1.19442 1.11773 1.53033 1.17971 0.90415 0.98165 1.01335 1.20928 0.94691 0.96748 1.00702 1.20688 0.98499 0.99786 1.04994 1.20769 0.99527 0.93957 0.99750 1.21023 0.98050 0.96709 1.02200 1.17755 0.93717 0.92436 0.88986 1.19486 0.94715 0.90666 1.47505 0.89893 1.26708 0.95671 1.04118 0.91370 1.69851 1.09245 1.29985 1.37354 0.85210 0.78528 0.75648 0.80102 1.17458 1.20110 1.18958 1.20660 0.94852 0.96181 1.06820 1.21133 0.92053 0.99254 0.97671 0.90743 0.90641 0.90568 0.83314 0.83849 0.88391 0.88568 0.91793 0.74611 0.87244 0.86689 0.86814 0.87247 0.90415 0.85655 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 71.24 0.71 -0.41 16 2 C -0.13 -2.24 5.88 -19.85 -0.12 -2.36 16 3 C -0.08 -1.50 9.69 22.25 0.22 -1.28 16 4 C -0.21 -4.63 8.44 22.36 0.19 -4.44 16 5 C 0.10 2.71 6.64 22.51 0.15 2.86 16 6 O -0.31 -10.22 9.32 -73.43 -0.68 -10.91 16 7 C 0.08 2.22 2.64 29.85 0.08 2.30 16 8 H 0.12 2.91 6.05 -2.39 -0.01 2.89 16 9 C -0.17 -3.67 9.18 71.98 0.66 -3.01 16 10 C 0.50 19.57 7.09 87.66 0.62 20.19 16 11 O -0.56 -27.04 13.76 15.99 0.22 -26.82 16 12 N -0.62 -25.16 4.92 -302.28 -1.49 -26.64 16 13 C 0.02 0.76 6.38 38.88 0.25 1.01 16 14 C -0.11 -5.46 8.71 22.36 0.19 -5.27 16 15 C -0.22 -10.33 10.04 22.42 0.22 -10.10 16 16 C -0.12 -5.77 9.97 22.01 0.22 -5.55 16 17 C -0.16 -8.33 8.57 22.47 0.19 -8.14 16 18 C 0.07 3.88 5.52 -21.18 -0.12 3.77 16 19 C -0.49 -24.23 8.20 23.38 0.19 -24.04 16 20 H 0.08 3.78 7.62 -2.91 -0.02 3.76 16 21 C 0.03 1.63 5.35 85.26 0.46 2.09 16 22 N -0.84 -41.80 10.88 21.83 0.24 -41.56 16 23 Si 0.98 35.26 29.56 68.60 2.03 37.29 16 24 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 25 H -0.28 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 27 C -0.17 -4.13 9.99 22.37 0.22 -3.91 16 28 C -0.08 -1.58 9.69 22.25 0.22 -1.37 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.14 2.60 5.59 -2.91 -0.02 2.59 16 34 H 0.10 1.82 7.46 -2.39 -0.02 1.80 16 35 H 0.10 1.67 7.36 -2.39 -0.02 1.65 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.42 14.38 7.31 -92.71 -0.68 13.70 16 38 H 0.11 5.46 6.01 -2.91 -0.02 5.45 16 39 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 40 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.11 5.90 6.42 -2.91 -0.02 5.88 16 42 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 43 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 44 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -67.08 366.60 5.23 -61.85 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: 0.35 Total: 44.44 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 4.56 Total: -37.66 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -1.25 Total: -68.20 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.46 Total: -37.72 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Total: -67.08 5.23 -61.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516890960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.441 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds