Wall clock time and date at job start Tue Mar 31 2020 15:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47254 * 2 1 4 4 C 1.52995 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47355 * 305.00275 * 4 3 2 6 6 C 1.52997 * 109.47214 * 184.99753 * 4 3 2 7 7 C 1.52998 * 109.46829 * 65.79438 * 6 4 3 8 8 S 1.81402 * 109.46977 * 64.99997 * 4 3 2 9 9 O 1.42106 * 110.54349 * 290.87361 * 8 4 3 10 10 O 1.42106 * 110.54330 * 67.62131 * 8 4 3 11 11 N 1.65599 * 104.44972 * 179.24674 * 8 4 3 12 12 C 1.46501 * 120.00107 * 82.63180 * 11 8 4 13 13 C 1.50697 * 109.47403 * 94.99778 * 12 11 8 14 14 H 1.08005 * 120.00005 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00149 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99897 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99986 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47364 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47244 * 120.00043 * 17 15 13 20 20 H 1.48502 * 109.47316 * 239.99761 * 17 15 13 21 21 C 1.39678 * 120.00199 * 262.62596 * 11 8 4 22 22 C 1.38914 * 120.07554 * 287.33591 * 21 11 8 23 23 C 1.38106 * 119.92332 * 179.76469 * 22 21 11 24 24 C 1.38287 * 120.07086 * 0.50999 * 23 22 21 25 25 C 1.38287 * 120.15353 * 359.73744 * 24 23 22 26 26 C 1.38104 * 120.07143 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46737 * 300.00029 * 1 2 3 28 28 H 1.09000 * 109.46876 * 60.00103 * 1 2 3 29 29 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46876 * 119.99897 * 2 1 3 31 31 H 1.08995 * 109.47237 * 239.99991 * 2 1 3 32 32 H 1.08995 * 109.47066 * 300.00226 * 3 2 1 33 33 H 1.09003 * 109.46719 * 59.99862 * 3 2 1 34 34 H 1.09003 * 109.47297 * 185.78821 * 6 4 3 35 35 H 1.08993 * 109.47390 * 305.79594 * 6 4 3 36 36 H 1.09003 * 109.47144 * 173.23764 * 7 6 4 37 37 H 1.09003 * 109.47466 * 293.23401 * 7 6 4 38 38 H 1.09001 * 109.47528 * 53.23726 * 7 6 4 39 39 H 1.08997 * 109.46930 * 214.99804 * 12 11 8 40 40 H 1.08999 * 109.46557 * 334.99901 * 12 11 8 41 41 H 0.97000 * 120.00131 * 180.02562 * 16 15 13 42 42 H 1.07996 * 120.03851 * 359.97438 * 22 21 11 43 43 H 1.07995 * 119.96064 * 180.24912 * 23 22 21 44 44 H 1.08002 * 119.92382 * 179.72227 * 24 23 22 45 45 H 1.07994 * 119.96088 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.03196 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0800 2.8795 0.1263 7 6 3.6918 3.4404 1.4958 8 16 4.1753 0.7195 -1.5490 9 8 3.8945 -0.6729 -1.5928 10 8 3.8643 1.5644 -2.6485 11 7 5.8247 0.7998 -1.4260 12 6 6.5554 -0.2335 -0.6880 13 6 7.0383 -1.2899 -1.6480 14 1 6.8222 -1.2008 -2.7025 15 6 7.7552 -2.3708 -1.1802 16 7 8.0180 -2.4796 0.1038 17 14 8.3531 -3.6807 -2.3702 18 1 7.9303 -3.3270 -3.7491 19 1 9.8348 -3.7623 -2.3129 20 1 7.7702 -4.9939 -1.9947 21 6 6.5194 1.8527 -2.0259 22 6 6.6584 1.8975 -3.4073 23 6 7.3417 2.9425 -3.9975 24 6 7.8963 3.9380 -3.2141 25 6 7.7642 3.8938 -1.8383 26 6 7.0780 2.8542 -1.2420 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 5.1651 2.8903 0.0237 35 1 3.6348 3.4929 -0.6570 36 1 4.1559 4.4171 1.6333 37 1 2.6080 3.5421 1.5529 38 1 4.0348 2.7620 2.2769 39 1 7.4101 0.2165 -0.1830 40 1 5.8950 -0.6881 0.0504 41 1 8.5226 -3.2398 0.4329 42 1 6.2296 1.1177 -4.0193 43 1 7.4466 2.9800 -5.0717 44 1 8.4340 4.7518 -3.6779 45 1 8.1989 4.6727 -1.2295 46 1 6.9756 2.8201 -0.1674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517069295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:22 Heat of formation + Delta-G solvation = -59.881968 kcal Electronic energy + Delta-G solvation = -27297.928954 eV Core-core repulsion = 23700.253324 eV Total energy + Delta-G solvation = -3597.675629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.02120 -36.96294 -36.54704 -35.44924 -35.29508 -33.25030 -32.52649 -30.54075 -29.33306 -28.74662 -26.66058 -25.05953 -22.97945 -22.23947 -21.58515 -21.43180 -21.00949 -18.45404 -17.63407 -16.78670 -16.25300 -16.11219 -15.63784 -15.00949 -14.76682 -14.62371 -14.42072 -14.19901 -13.92633 -13.42270 -13.32322 -13.01632 -12.83172 -12.57789 -12.47598 -12.36951 -12.08975 -11.84248 -11.75968 -11.61492 -11.49736 -11.31967 -11.21642 -11.14016 -10.98440 -10.88021 -10.77381 -10.64147 -10.55789 -10.49964 -10.09652 -9.88397 -9.71539 -8.59126 -8.52253 -8.45285 -7.92546 -6.07560 -4.09868 0.70957 1.75724 1.82109 3.22502 3.31695 3.38928 3.45543 4.14975 4.29277 4.38378 4.45021 4.55640 4.88032 4.97977 5.15126 5.16727 5.24129 5.27895 5.29217 5.33401 5.40584 5.43488 5.47583 5.65557 5.68816 5.71591 5.78877 5.83018 5.86518 5.94419 6.00309 6.03103 6.10381 6.14839 6.24831 6.33379 6.36696 6.43867 6.74953 6.86765 6.95394 7.11663 7.23743 7.28532 7.75848 7.91342 8.16488 8.91836 9.54648 11.01503 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.006418 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.224396 B = 4361.805005 C = 6144.852269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.160 4.160 3 C -0.102 4.102 4 C -0.597 4.597 5 H 0.136 0.864 6 C -0.112 4.112 7 C -0.143 4.143 8 S 2.601 3.399 9 O -0.931 6.931 10 O -0.964 6.964 11 N -0.946 5.946 12 C 0.257 3.743 13 C -0.519 4.519 14 H 0.062 0.938 15 C 0.062 3.938 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.282 1.282 21 C 0.176 3.824 22 C -0.095 4.095 23 C -0.114 4.114 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.126 4.126 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 13.191 1.229 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.197 4.197 3 C -0.140 4.140 4 C -0.705 4.705 5 H 0.154 0.846 6 C -0.150 4.150 7 C -0.201 4.201 8 S 2.695 3.305 9 O -0.921 6.921 10 O -0.955 6.955 11 N -0.779 5.779 12 C 0.137 3.863 13 C -0.558 4.558 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.208 1.208 21 C 0.081 3.919 22 C -0.116 4.116 23 C -0.133 4.133 24 C -0.148 4.148 25 C -0.136 4.136 26 C -0.147 4.147 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.239 12.637 0.684 15.101 hybrid contribution 0.621 -0.714 0.220 0.972 sum -7.618 11.923 0.904 14.178 Atomic orbital electron populations 1.21726 0.95217 1.02011 1.01637 1.22015 0.96891 0.96104 1.04696 1.21453 0.90205 0.98203 1.04177 1.30665 1.05920 1.08775 1.25183 0.84562 1.21425 1.02263 0.91673 0.99675 1.21732 1.01385 1.00708 0.96317 1.05551 0.73305 0.74961 0.76647 1.93622 1.82909 1.29433 1.86147 1.93528 1.83556 1.70068 1.48301 1.55434 1.23241 1.32396 1.66798 1.19219 0.92250 0.83622 0.91170 1.21436 1.33917 1.05845 0.94610 0.91957 1.24896 0.95902 0.97899 0.95301 1.69915 1.40363 1.30754 1.12725 0.86454 0.78186 0.81532 0.81386 1.19602 1.20985 1.20809 1.17246 0.95900 0.87668 0.91056 1.21428 0.97592 0.98120 0.94417 1.20978 0.98306 0.94402 0.99626 1.21046 1.00766 0.99073 0.93939 1.20906 0.99642 0.98269 0.94829 1.21355 0.99380 0.94173 0.99833 0.92761 0.92664 0.92278 0.90677 0.90029 0.90928 0.89638 0.89901 0.90528 0.92424 0.92568 0.92356 0.94302 0.94380 0.92755 0.85941 0.86182 0.86489 0.86252 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.16 -2.17 5.62 -26.73 -0.15 -2.32 16 3 C -0.10 -1.30 4.56 -26.73 -0.12 -1.42 16 4 C -0.60 -8.76 2.49 -26.73 -0.07 -8.83 16 5 H 0.14 1.92 8.14 -51.92 -0.42 1.50 16 6 C -0.11 -1.45 5.31 -26.73 -0.14 -1.59 16 7 C -0.14 -1.48 9.52 37.16 0.35 -1.13 16 8 S 2.60 51.02 4.37 -107.50 -0.47 50.55 16 9 O -0.93 -21.54 15.06 -57.54 -0.87 -22.40 16 10 O -0.96 -19.84 16.34 -57.54 -0.94 -20.78 16 11 N -0.95 -19.82 2.35 -59.81 -0.14 -19.96 16 12 C 0.26 6.34 4.97 -5.19 -0.03 6.31 16 13 C -0.52 -14.54 9.33 -34.44 -0.32 -14.86 16 14 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.18 3.39 4.50 -83.79 -0.38 3.02 16 22 C -0.09 -1.80 9.04 -39.38 -0.36 -2.15 16 23 C -0.11 -1.77 10.04 -39.61 -0.40 -2.17 16 24 C -0.13 -1.78 10.04 -39.55 -0.40 -2.17 16 25 C -0.12 -1.64 10.04 -39.61 -0.40 -2.04 16 26 C -0.13 -2.05 8.29 -39.38 -0.33 -2.38 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.31 5.65 -51.93 -0.29 1.02 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.89 6.52 -51.93 -0.34 0.56 16 34 H 0.08 1.10 4.21 -51.93 -0.22 0.88 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.52 6.81 -51.93 -0.35 0.17 16 38 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.04 0.98 8.02 -51.93 -0.42 0.56 16 40 H 0.04 0.96 7.82 -51.93 -0.41 0.56 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.81 6.82 -52.49 -0.36 1.46 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -32.69 378.86 -10.87 -43.56 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.43 Total: 2.88 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: -2.46 Total: -31.33 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.60 Total: -45.20 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.81 Total: -43.19 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.47 Total: 50.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.69 -10.87 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517069295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.318 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds