Wall clock time and date at job start Tue Mar 31 2020 15:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47254 * 2 1 4 4 C 1.52995 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47355 * 305.00275 * 4 3 2 6 6 C 1.52997 * 109.47214 * 184.99753 * 4 3 2 7 7 C 1.52998 * 109.46829 * 65.79438 * 6 4 3 8 8 S 1.81402 * 109.46977 * 64.99997 * 4 3 2 9 9 O 1.42106 * 110.54349 * 290.87361 * 8 4 3 10 10 O 1.42106 * 110.54330 * 67.62131 * 8 4 3 11 11 N 1.65599 * 104.44972 * 179.24674 * 8 4 3 12 12 C 1.46501 * 120.00107 * 82.63180 * 11 8 4 13 13 C 1.50697 * 109.47403 * 94.99778 * 12 11 8 14 14 H 1.08005 * 120.00005 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00149 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99897 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99986 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47364 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47244 * 120.00043 * 17 15 13 20 20 H 1.48502 * 109.47316 * 239.99761 * 17 15 13 21 21 C 1.39678 * 120.00199 * 262.62596 * 11 8 4 22 22 C 1.38914 * 120.07554 * 287.33591 * 21 11 8 23 23 C 1.38106 * 119.92332 * 179.76469 * 22 21 11 24 24 C 1.38287 * 120.07086 * 0.50999 * 23 22 21 25 25 C 1.38287 * 120.15353 * 359.73744 * 24 23 22 26 26 C 1.38104 * 120.07143 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46737 * 300.00029 * 1 2 3 28 28 H 1.09000 * 109.46876 * 60.00103 * 1 2 3 29 29 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46876 * 119.99897 * 2 1 3 31 31 H 1.08995 * 109.47237 * 239.99991 * 2 1 3 32 32 H 1.08995 * 109.47066 * 300.00226 * 3 2 1 33 33 H 1.09003 * 109.46719 * 59.99862 * 3 2 1 34 34 H 1.09003 * 109.47297 * 185.78821 * 6 4 3 35 35 H 1.08993 * 109.47390 * 305.79594 * 6 4 3 36 36 H 1.09003 * 109.47144 * 173.23764 * 7 6 4 37 37 H 1.09003 * 109.47466 * 293.23401 * 7 6 4 38 38 H 1.09001 * 109.47528 * 53.23726 * 7 6 4 39 39 H 1.08997 * 109.46930 * 214.99804 * 12 11 8 40 40 H 1.08999 * 109.46557 * 334.99901 * 12 11 8 41 41 H 0.97000 * 120.00131 * 180.02562 * 16 15 13 42 42 H 1.07996 * 120.03851 * 359.97438 * 22 21 11 43 43 H 1.07995 * 119.96064 * 180.24912 * 23 22 21 44 44 H 1.08002 * 119.92382 * 179.72227 * 24 23 22 45 45 H 1.07994 * 119.96088 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.03196 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0800 2.8795 0.1263 7 6 3.6918 3.4404 1.4958 8 16 4.1753 0.7195 -1.5490 9 8 3.8945 -0.6729 -1.5928 10 8 3.8643 1.5644 -2.6485 11 7 5.8247 0.7998 -1.4260 12 6 6.5554 -0.2335 -0.6880 13 6 7.0383 -1.2899 -1.6480 14 1 6.8222 -1.2008 -2.7025 15 6 7.7552 -2.3708 -1.1802 16 7 8.0180 -2.4796 0.1038 17 14 8.3531 -3.6807 -2.3702 18 1 7.9303 -3.3270 -3.7491 19 1 9.8348 -3.7623 -2.3129 20 1 7.7702 -4.9939 -1.9947 21 6 6.5194 1.8527 -2.0259 22 6 6.6584 1.8975 -3.4073 23 6 7.3417 2.9425 -3.9975 24 6 7.8963 3.9380 -3.2141 25 6 7.7642 3.8938 -1.8383 26 6 7.0780 2.8542 -1.2420 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 5.1651 2.8903 0.0237 35 1 3.6348 3.4929 -0.6570 36 1 4.1559 4.4171 1.6333 37 1 2.6080 3.5421 1.5529 38 1 4.0348 2.7620 2.2769 39 1 7.4101 0.2165 -0.1830 40 1 5.8950 -0.6881 0.0504 41 1 8.5226 -3.2398 0.4329 42 1 6.2296 1.1177 -4.0193 43 1 7.4466 2.9800 -5.0717 44 1 8.4340 4.7518 -3.6779 45 1 8.1989 4.6727 -1.2295 46 1 6.9756 2.8201 -0.1674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517069295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:21 Heat of formation + Delta-G solvation = -79.255346 kcal Electronic energy + Delta-G solvation = -27298.769046 eV Core-core repulsion = 23700.253324 eV Total energy + Delta-G solvation = -3598.515722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32474 -38.17766 -38.05250 -37.02716 -36.88428 -34.64868 -34.19512 -31.76855 -30.85127 -29.71686 -28.51309 -26.06643 -24.85738 -23.50253 -22.92086 -22.50636 -22.14562 -19.93133 -19.06640 -18.70330 -17.78260 -17.64383 -17.14418 -16.44184 -16.19739 -15.85723 -15.74878 -15.59738 -15.05584 -14.78869 -14.50900 -14.35345 -14.14965 -14.04735 -13.84132 -13.48127 -13.44713 -13.31948 -13.17937 -13.01073 -12.93998 -12.85460 -12.67083 -12.57306 -12.32297 -12.23604 -12.14600 -12.12575 -11.88588 -11.73999 -11.70184 -11.52673 -11.07080 -10.62653 -10.17702 -9.75557 -9.34775 -8.24030 -6.33587 -0.76087 0.48248 0.56928 1.33195 1.35224 1.46997 1.69111 2.37534 2.85443 2.91493 3.05768 3.11776 3.39306 3.60579 3.90209 4.08822 4.10469 4.15936 4.17095 4.23012 4.30145 4.38354 4.46429 4.52018 4.65251 4.70821 4.71900 4.74300 4.79475 4.86743 4.90548 5.09570 5.12602 5.13797 5.15977 5.19404 5.21558 5.29963 5.35398 5.40476 5.52647 5.65398 5.68993 5.72465 5.90579 6.06771 6.33002 6.71905 7.33663 8.83743 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.006418 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.224396 B = 4361.805005 C = 6144.852269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.169 4.169 3 C -0.103 4.103 4 C -0.564 4.564 5 H 0.144 0.856 6 C -0.116 4.116 7 C -0.140 4.140 8 S 2.583 3.417 9 O -0.984 6.984 10 O -0.984 6.984 11 N -0.950 5.950 12 C 0.274 3.726 13 C -0.538 4.538 14 H 0.042 0.958 15 C 0.016 3.984 16 N -0.922 5.922 17 Si 0.951 3.049 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.275 1.275 21 C 0.139 3.861 22 C -0.133 4.133 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.108 4.108 26 C -0.133 4.133 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.031 0.969 40 H 0.024 0.976 41 H 0.268 0.732 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.160 0.840 45 H 0.162 0.838 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 16.116 2.490 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C -0.141 4.141 4 C -0.678 4.678 5 H 0.162 0.838 6 C -0.154 4.154 7 C -0.198 4.198 8 S 2.684 3.316 9 O -0.975 6.975 10 O -0.975 6.975 11 N -0.781 5.781 12 C 0.153 3.847 13 C -0.578 4.578 14 H 0.060 0.940 15 C -0.184 4.184 16 N -0.562 5.562 17 Si 0.776 3.224 18 H -0.201 1.201 19 H -0.193 1.193 20 H -0.201 1.201 21 C 0.046 3.954 22 C -0.154 4.154 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.153 4.153 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.160 0.840 44 H 0.178 0.822 45 H 0.179 0.821 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.032 15.549 1.879 17.602 hybrid contribution 0.536 -1.508 -0.178 1.610 sum -7.497 14.041 1.701 16.008 Atomic orbital electron populations 1.21733 0.92886 1.02654 1.03106 1.22079 0.99106 0.96430 1.03045 1.21617 0.88199 0.98065 1.06249 1.30377 1.07449 1.09801 1.20145 0.83824 1.21561 1.02037 0.89962 1.01855 1.21748 1.02659 1.01400 0.93979 1.05880 0.73007 0.74181 0.78532 1.93552 1.83423 1.32808 1.87687 1.93481 1.83519 1.69746 1.50757 1.55168 1.23511 1.32479 1.66899 1.18738 0.91753 0.83843 0.90384 1.21701 1.34351 1.07400 0.94319 0.93962 1.25631 0.96076 0.99731 0.96939 1.69979 1.40858 1.31522 1.13823 0.85616 0.78494 0.79168 0.79116 1.20117 1.19277 1.20086 1.17596 0.97832 0.88473 0.91546 1.21476 0.99957 0.99343 0.94624 1.21297 0.97418 0.93762 1.01176 1.21548 0.99267 0.98975 0.93913 1.21420 0.97846 0.97929 0.95482 1.21576 0.99278 0.94053 1.00421 0.90278 0.92155 0.92190 0.90691 0.93503 0.90394 0.85745 0.90424 0.90208 0.90628 0.90927 0.92231 0.95084 0.95780 0.92294 0.89050 0.83962 0.82241 0.82095 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.28 16 2 C -0.17 -4.59 5.62 30.60 0.17 -4.42 16 3 C -0.10 -2.45 4.56 30.59 0.14 -2.31 16 4 C -0.56 -16.32 2.49 30.59 0.08 -16.25 16 5 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 6 C -0.12 -2.77 5.31 30.59 0.16 -2.61 16 7 C -0.14 -2.37 9.52 71.98 0.69 -1.68 16 8 S 2.58 107.66 4.37 -56.49 -0.25 107.41 16 9 O -0.98 -49.52 15.06 -127.65 -1.92 -51.44 16 10 O -0.98 -43.09 16.34 -127.65 -2.09 -45.17 16 11 N -0.95 -42.12 2.35 -343.14 -0.81 -42.93 16 12 C 0.27 14.30 4.97 85.63 0.43 14.72 16 13 C -0.54 -31.86 9.33 25.60 0.24 -31.62 16 14 H 0.04 2.60 7.81 -2.91 -0.02 2.57 16 15 C 0.02 0.91 5.46 84.66 0.46 1.37 16 16 N -0.92 -54.51 13.29 21.45 0.28 -54.22 16 17 Si 0.95 46.34 29.54 68.60 2.03 48.36 16 18 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 C 0.14 5.57 4.50 38.21 0.17 5.74 16 22 C -0.13 -5.32 9.04 22.40 0.20 -5.11 16 23 C -0.12 -3.58 10.04 22.25 0.22 -3.35 16 24 C -0.12 -2.87 10.04 22.29 0.22 -2.65 16 25 C -0.11 -2.66 10.04 22.25 0.22 -2.44 16 26 C -0.13 -4.18 8.29 22.40 0.19 -4.00 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.61 5.65 -2.39 -0.01 1.59 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.12 2.11 6.52 -2.39 -0.02 2.09 16 34 H 0.08 1.97 4.21 -2.39 -0.01 1.96 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.01 6.81 -2.39 -0.02 0.99 16 38 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 39 H 0.03 1.64 8.02 -2.39 -0.02 1.62 16 40 H 0.02 1.30 7.82 -2.39 -0.02 1.28 16 41 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.09 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 44 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.14 3.84 6.82 -2.91 -0.02 3.82 16 Total: -1.00 -76.37 378.86 2.50 -73.87 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.95 Total: 21.01 kcal Atomic # 6 Polarization: -61.20 SS G_CDS: 4.31 Total: -56.89 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -0.52 Total: -97.15 kcal Atomic # 8 Polarization: -92.61 SS G_CDS: -4.01 Total: -96.61 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: 107.66 SS G_CDS: -0.25 Total: 107.41 kcal Total: -76.37 2.50 -73.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517069295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.385 kcal (2) G-P(sol) polarization free energy of solvation -76.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds