Wall clock time and date at job start Tue Mar 31 2020 15:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47060 * 54.99940 * 4 3 2 6 6 C 1.53003 * 109.47033 * 174.99814 * 4 3 2 7 7 C 1.52995 * 109.47012 * 188.65999 * 6 4 3 8 8 S 1.81400 * 109.46659 * 294.99736 * 4 3 2 9 9 O 1.42097 * 110.54191 * 288.51201 * 8 4 3 10 10 O 1.42097 * 110.54113 * 65.27141 * 8 4 3 11 11 N 1.65606 * 104.44405 * 176.88932 * 8 4 3 12 12 C 1.46503 * 119.99527 * 115.91750 * 11 8 4 13 13 C 1.50697 * 109.47277 * 95.87050 * 12 11 8 14 14 H 1.07999 * 120.00308 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00129 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00256 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00145 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47127 * 60.00069 * 17 15 13 19 19 H 1.48507 * 109.47105 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47072 * 299.99672 * 17 15 13 21 21 C 1.39674 * 120.00197 * 295.91438 * 11 8 4 22 22 C 1.38913 * 120.07204 * 333.04474 * 21 11 8 23 23 C 1.38111 * 119.91991 * 179.77239 * 22 21 11 24 24 C 1.38281 * 120.07288 * 0.50586 * 23 22 21 25 25 C 1.38283 * 120.15407 * 359.74511 * 24 23 22 26 26 C 1.38099 * 120.07342 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46886 * 299.99506 * 1 2 3 28 28 H 1.08998 * 109.47192 * 59.99806 * 1 2 3 29 29 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47193 * 240.00060 * 2 1 3 31 31 H 1.08998 * 109.47192 * 120.00194 * 2 1 3 32 32 H 1.08993 * 109.47399 * 59.99950 * 3 2 1 33 33 H 1.09003 * 109.46862 * 299.99867 * 3 2 1 34 34 H 1.09001 * 109.47318 * 308.66081 * 6 4 3 35 35 H 1.09005 * 109.46879 * 68.66030 * 6 4 3 36 36 H 1.09000 * 109.47418 * 170.49310 * 7 6 4 37 37 H 1.09007 * 109.47180 * 290.49447 * 7 6 4 38 38 H 1.09003 * 109.47010 * 50.49332 * 7 6 4 39 39 H 1.09000 * 109.46808 * 215.87080 * 12 11 8 40 40 H 1.08999 * 109.47353 * 335.86890 * 12 11 8 41 41 H 0.97000 * 120.00072 * 180.02562 * 16 15 13 42 42 H 1.08001 * 120.03860 * 359.97438 * 22 21 11 43 43 H 1.08002 * 119.95772 * 180.25532 * 23 22 21 44 44 H 1.07995 * 119.92005 * 179.72884 * 24 23 22 45 45 H 1.07999 * 119.96717 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.03830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0800 2.8795 -0.1264 7 6 5.5943 2.8661 -0.3439 8 16 4.1752 0.7195 1.5491 9 8 3.9435 1.6048 2.6362 10 8 3.8166 -0.6529 1.6325 11 7 5.8226 0.7016 1.3809 12 6 6.6588 1.5084 2.2733 13 6 7.1450 0.6537 3.4152 14 1 6.8595 -0.3864 3.4710 15 6 7.9544 1.1995 4.3888 16 7 8.3026 2.4659 4.3206 17 14 8.5566 0.1402 5.8047 18 1 9.3526 -0.9940 5.2707 19 1 9.4053 0.9577 6.7085 20 1 7.3912 -0.3853 6.5602 21 6 6.4149 -0.0827 0.3885 22 6 5.7726 -1.2253 -0.0715 23 6 6.3588 -1.9960 -1.0563 24 6 7.5886 -1.6370 -1.5769 25 6 8.2332 -0.5031 -1.1175 26 6 7.6504 0.2746 -0.1364 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.5955 3.3641 -0.9741 35 1 3.8489 3.4282 0.7866 36 1 5.9335 3.8696 -0.6009 37 1 6.0898 2.5380 0.5700 38 1 5.8387 2.1810 -1.1557 39 1 7.5140 1.8949 1.7189 40 1 6.0740 2.3404 2.6655 41 1 8.8724 2.8498 5.0054 42 1 4.8143 -1.5088 0.3382 43 1 5.8581 -2.8822 -1.4173 44 1 8.0468 -2.2439 -2.3437 45 1 9.1937 -0.2258 -1.5259 46 1 8.1545 1.1599 0.2223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517069296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:26 Heat of formation + Delta-G solvation = -46.264400 kcal Electronic energy + Delta-G solvation = -27753.343956 eV Core-core repulsion = 24156.258828 eV Total energy + Delta-G solvation = -3597.085127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.18599 -36.95164 -36.79527 -35.67740 -35.46908 -33.29702 -32.56007 -30.55158 -29.37307 -28.85553 -26.79422 -24.48187 -23.19608 -22.25313 -21.88302 -21.17865 -21.06551 -18.68446 -17.64168 -17.09799 -16.51727 -16.24436 -15.39958 -14.98636 -14.78363 -14.48482 -14.32297 -14.01750 -13.89094 -13.64801 -13.48548 -13.24775 -12.93087 -12.68484 -12.50687 -12.31397 -12.21077 -12.01744 -11.77962 -11.55452 -11.33710 -11.30336 -11.16092 -11.10835 -10.95083 -10.83604 -10.72508 -10.70675 -10.60136 -10.41489 -10.17667 -9.90344 -9.76544 -9.14189 -8.52336 -8.47861 -7.42853 -6.11476 -4.16472 0.56811 1.80947 1.88227 3.04679 3.32953 3.35506 3.40979 4.10327 4.22186 4.32303 4.41844 4.49446 4.77033 4.88366 5.09809 5.13363 5.20558 5.27040 5.30456 5.34322 5.40098 5.51272 5.55507 5.62013 5.68175 5.71021 5.75619 5.86848 5.87765 5.96881 6.07362 6.08819 6.11575 6.22649 6.24771 6.28454 6.53074 6.56347 6.72281 6.94818 6.98316 7.16227 7.22984 7.30259 7.70078 7.85425 8.10650 8.86247 9.48965 10.96670 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.005893 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.617889 B = 4750.289898 C = 5755.485926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.162 4.162 3 C -0.102 4.102 4 C -0.595 4.595 5 H 0.135 0.865 6 C -0.100 4.100 7 C -0.195 4.195 8 S 2.604 3.396 9 O -0.935 6.935 10 O -0.957 6.957 11 N -0.924 5.924 12 C 0.240 3.760 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.197 3.803 22 C -0.205 4.205 23 C -0.092 4.092 24 C -0.161 4.161 25 C -0.097 4.097 26 C -0.137 4.137 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.266 0.734 42 H 0.159 0.841 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -1.799 -14.037 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C -0.141 4.141 4 C -0.703 4.703 5 H 0.153 0.847 6 C -0.138 4.138 7 C -0.252 4.252 8 S 2.699 3.301 9 O -0.925 6.925 10 O -0.947 6.947 11 N -0.749 5.749 12 C 0.121 3.879 13 C -0.574 4.574 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.098 3.902 22 C -0.226 4.226 23 C -0.111 4.111 24 C -0.181 4.181 25 C -0.115 4.115 26 C -0.159 4.159 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.176 0.824 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.858 -1.852 -13.080 15.906 hybrid contribution 0.682 -0.304 0.157 0.763 sum -8.176 -2.156 -12.923 15.444 Atomic orbital electron populations 1.21729 0.95126 1.02008 1.01811 1.22065 0.97063 0.96089 1.04686 1.21440 0.89932 0.98363 1.04391 1.30587 1.05863 1.09495 1.24372 0.84719 1.21253 0.97161 0.91572 1.03858 1.22547 0.94897 1.02825 1.04932 1.05497 0.73091 0.75152 0.76354 1.93594 1.83646 1.67032 1.48245 1.93421 1.82638 1.32560 1.86049 1.55647 1.24716 1.54525 1.39997 1.19458 0.90470 0.90833 0.87179 1.21393 1.31087 0.97237 1.07687 0.91935 1.24889 0.95763 0.95095 0.97902 1.69903 1.36113 1.11928 1.35150 0.86557 0.78891 0.80245 0.81839 1.20034 1.21037 1.19950 1.17600 0.94304 0.90148 0.88109 1.22090 1.04696 0.94569 1.01251 1.20849 0.95355 0.98773 0.96109 1.20966 0.96346 0.98480 1.02282 1.20935 0.99135 0.94866 0.96611 1.21073 0.95750 1.01496 0.97588 0.92526 0.92727 0.92296 0.90893 0.89540 0.90709 0.89638 0.90504 0.90195 0.91827 0.89016 0.92113 0.93534 0.92106 0.92475 0.82373 0.86388 0.86857 0.86384 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.16 -1.94 5.62 -26.73 -0.15 -2.09 16 3 C -0.10 -1.22 4.67 -26.73 -0.12 -1.35 16 4 C -0.59 -8.30 2.32 -26.73 -0.06 -8.36 16 5 H 0.13 1.68 7.97 -51.93 -0.41 1.27 16 6 C -0.10 -1.34 5.36 -26.73 -0.14 -1.48 16 7 C -0.19 -2.80 8.35 37.16 0.31 -2.49 16 8 S 2.60 50.49 4.17 -107.50 -0.45 50.04 16 9 O -0.93 -21.46 15.87 -57.54 -0.91 -22.37 16 10 O -0.96 -19.42 12.31 -57.54 -0.71 -20.13 16 11 N -0.92 -19.16 1.30 -59.81 -0.08 -19.24 16 12 C 0.24 5.90 3.04 -5.19 -0.02 5.88 16 13 C -0.53 -15.00 9.35 -34.44 -0.32 -15.32 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 16 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 17 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.20 3.70 5.07 -83.79 -0.43 3.27 16 22 C -0.20 -3.55 9.08 -39.38 -0.36 -3.91 16 23 C -0.09 -1.35 10.04 -39.61 -0.40 -1.75 16 24 C -0.16 -2.23 10.04 -39.55 -0.40 -2.63 16 25 C -0.10 -1.43 10.04 -39.62 -0.40 -1.83 16 26 C -0.14 -2.40 8.60 -39.38 -0.34 -2.74 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.23 5.47 -51.93 -0.28 0.95 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 35 H 0.08 1.14 7.76 -51.93 -0.40 0.73 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.58 3.01 -51.93 -0.16 1.42 16 38 H 0.06 0.81 7.50 -51.93 -0.39 0.42 16 39 H 0.05 1.13 5.65 -51.93 -0.29 0.83 16 40 H 0.06 1.60 6.81 -51.93 -0.35 1.24 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.16 2.81 4.86 -52.49 -0.26 2.56 16 43 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.13 2.37 6.25 -52.49 -0.33 2.05 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -31.72 365.42 -10.55 -42.27 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.07 Total: 6.00 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: -2.55 Total: -34.11 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.66 Total: -44.07 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.62 Total: -42.50 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 50.49 SS G_CDS: -0.45 Total: 50.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.72 -10.55 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517069296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.995 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds