Wall clock time and date at job start Tue Mar 31 2020 15:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47060 * 54.99940 * 4 3 2 6 6 C 1.53003 * 109.47033 * 174.99814 * 4 3 2 7 7 C 1.52995 * 109.47012 * 188.65999 * 6 4 3 8 8 S 1.81400 * 109.46659 * 294.99736 * 4 3 2 9 9 O 1.42097 * 110.54191 * 288.51201 * 8 4 3 10 10 O 1.42097 * 110.54113 * 65.27141 * 8 4 3 11 11 N 1.65606 * 104.44405 * 176.88932 * 8 4 3 12 12 C 1.46503 * 119.99527 * 115.91750 * 11 8 4 13 13 C 1.50697 * 109.47277 * 95.87050 * 12 11 8 14 14 H 1.07999 * 120.00308 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00129 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00256 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00145 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47127 * 60.00069 * 17 15 13 19 19 H 1.48507 * 109.47105 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47072 * 299.99672 * 17 15 13 21 21 C 1.39674 * 120.00197 * 295.91438 * 11 8 4 22 22 C 1.38913 * 120.07204 * 333.04474 * 21 11 8 23 23 C 1.38111 * 119.91991 * 179.77239 * 22 21 11 24 24 C 1.38281 * 120.07288 * 0.50586 * 23 22 21 25 25 C 1.38283 * 120.15407 * 359.74511 * 24 23 22 26 26 C 1.38099 * 120.07342 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46886 * 299.99506 * 1 2 3 28 28 H 1.08998 * 109.47192 * 59.99806 * 1 2 3 29 29 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47193 * 240.00060 * 2 1 3 31 31 H 1.08998 * 109.47192 * 120.00194 * 2 1 3 32 32 H 1.08993 * 109.47399 * 59.99950 * 3 2 1 33 33 H 1.09003 * 109.46862 * 299.99867 * 3 2 1 34 34 H 1.09001 * 109.47318 * 308.66081 * 6 4 3 35 35 H 1.09005 * 109.46879 * 68.66030 * 6 4 3 36 36 H 1.09000 * 109.47418 * 170.49310 * 7 6 4 37 37 H 1.09007 * 109.47180 * 290.49447 * 7 6 4 38 38 H 1.09003 * 109.47010 * 50.49332 * 7 6 4 39 39 H 1.09000 * 109.46808 * 215.87080 * 12 11 8 40 40 H 1.08999 * 109.47353 * 335.86890 * 12 11 8 41 41 H 0.97000 * 120.00072 * 180.02562 * 16 15 13 42 42 H 1.08001 * 120.03860 * 359.97438 * 22 21 11 43 43 H 1.08002 * 119.95772 * 180.25532 * 23 22 21 44 44 H 1.07995 * 119.92005 * 179.72884 * 24 23 22 45 45 H 1.07999 * 119.96717 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.03830 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0800 2.8795 -0.1264 7 6 5.5943 2.8661 -0.3439 8 16 4.1752 0.7195 1.5491 9 8 3.9435 1.6048 2.6362 10 8 3.8166 -0.6529 1.6325 11 7 5.8226 0.7016 1.3809 12 6 6.6588 1.5084 2.2733 13 6 7.1450 0.6537 3.4152 14 1 6.8595 -0.3864 3.4710 15 6 7.9544 1.1995 4.3888 16 7 8.3026 2.4659 4.3206 17 14 8.5566 0.1402 5.8047 18 1 9.3526 -0.9940 5.2707 19 1 9.4053 0.9577 6.7085 20 1 7.3912 -0.3853 6.5602 21 6 6.4149 -0.0827 0.3885 22 6 5.7726 -1.2253 -0.0715 23 6 6.3588 -1.9960 -1.0563 24 6 7.5886 -1.6370 -1.5769 25 6 8.2332 -0.5031 -1.1175 26 6 7.6504 0.2746 -0.1364 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.5955 3.3641 -0.9741 35 1 3.8489 3.4282 0.7866 36 1 5.9335 3.8696 -0.6009 37 1 6.0898 2.5380 0.5700 38 1 5.8387 2.1810 -1.1557 39 1 7.5140 1.8949 1.7189 40 1 6.0740 2.3404 2.6655 41 1 8.8724 2.8498 5.0054 42 1 4.8143 -1.5088 0.3382 43 1 5.8581 -2.8822 -1.4173 44 1 8.0468 -2.2439 -2.3437 45 1 9.1937 -0.2258 -1.5259 46 1 8.1545 1.1599 0.2223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517069296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:25 Heat of formation + Delta-G solvation = -64.475365 kcal Electronic energy + Delta-G solvation = -27754.133642 eV Core-core repulsion = 24156.258828 eV Total energy + Delta-G solvation = -3597.874814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50793 -38.46908 -37.91319 -37.16627 -37.02450 -34.78191 -34.16333 -31.81522 -30.79890 -29.94018 -28.58937 -25.68839 -24.83619 -23.54015 -23.08240 -22.47181 -22.11790 -20.13296 -19.00119 -18.90881 -17.95293 -17.91987 -16.91159 -16.50717 -16.06567 -15.87318 -15.54694 -15.30481 -15.11463 -14.94714 -14.78840 -14.63108 -14.29087 -14.05422 -13.65495 -13.54527 -13.40950 -13.30958 -13.26430 -13.14337 -13.04564 -12.88787 -12.56096 -12.46820 -12.29541 -12.21071 -12.15841 -12.03475 -11.95451 -11.67553 -11.59286 -11.38440 -11.09451 -10.82780 -10.63231 -9.76100 -8.85556 -8.24724 -6.39495 -0.85773 0.56017 0.62622 1.33687 1.36581 1.44024 1.55783 2.35147 2.75434 2.95130 3.03715 3.06694 3.34647 3.54479 3.88676 3.91809 4.10814 4.13250 4.22950 4.29616 4.33078 4.41300 4.45641 4.54967 4.67602 4.69426 4.74634 4.80510 4.81598 4.90716 4.94419 5.01600 5.09100 5.11201 5.17318 5.19354 5.24953 5.30387 5.38986 5.41321 5.59363 5.65061 5.75207 5.83059 5.88052 6.03140 6.33171 6.67621 7.28881 8.80440 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.005893 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.617889 B = 4750.289898 C = 5755.485926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.168 4.168 3 C -0.106 4.106 4 C -0.553 4.553 5 H 0.159 0.841 6 C -0.103 4.103 7 C -0.198 4.198 8 S 2.581 3.419 9 O -0.988 6.988 10 O -0.980 6.980 11 N -0.929 5.929 12 C 0.263 3.737 13 C -0.558 4.558 14 H 0.044 0.956 15 C 0.020 3.980 16 N -0.917 5.917 17 Si 0.953 3.047 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.278 1.278 21 C 0.170 3.830 22 C -0.221 4.221 23 C -0.087 4.087 24 C -0.149 4.149 25 C -0.093 4.093 26 C -0.155 4.155 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.270 0.730 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 -2.713 -17.295 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C -0.145 4.145 4 C -0.667 4.667 5 H 0.176 0.824 6 C -0.141 4.141 7 C -0.255 4.255 8 S 2.683 3.317 9 O -0.979 6.979 10 O -0.970 6.970 11 N -0.753 5.753 12 C 0.141 3.859 13 C -0.597 4.597 14 H 0.062 0.938 15 C -0.181 4.181 16 N -0.556 5.556 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.203 1.203 21 C 0.073 3.927 22 C -0.242 4.242 23 C -0.106 4.106 24 C -0.168 4.168 25 C -0.112 4.112 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.166 0.834 43 H 0.168 0.832 44 H 0.171 0.829 45 H 0.163 0.837 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.073 -2.807 -16.304 18.868 hybrid contribution 0.724 -0.050 1.028 1.258 sum -8.349 -2.857 -15.276 17.642 Atomic orbital electron populations 1.21746 0.93348 1.02741 1.02813 1.22114 0.98759 0.95833 1.03861 1.21642 0.87768 0.98952 1.06178 1.30262 1.07372 1.09610 1.19490 0.82356 1.21379 0.96817 0.90936 1.04953 1.22528 0.95469 1.03796 1.03685 1.06022 0.72757 0.74703 0.78267 1.93520 1.84171 1.67805 1.52413 1.93388 1.82538 1.33798 1.87279 1.55363 1.24699 1.54844 1.40378 1.18859 0.90224 0.89910 0.86885 1.21700 1.31593 0.96869 1.09514 0.93789 1.25663 0.95883 0.96346 1.00173 1.69984 1.36516 1.13051 1.36011 0.85693 0.78431 0.79083 0.79067 1.19141 1.19388 1.20326 1.17844 0.95348 0.90982 0.88530 1.22137 1.04783 0.94706 1.02614 1.21246 0.95657 0.98955 0.94726 1.21406 0.95545 0.97820 1.02042 1.21285 0.99999 0.94576 0.95321 1.21088 0.95654 1.01924 0.99092 0.92826 0.90427 0.91811 0.89481 0.92693 0.91152 0.85431 0.86129 0.91633 0.90462 0.92340 0.90982 0.93870 0.94978 0.92089 0.83401 0.83235 0.82920 0.83669 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.17 -3.79 5.62 30.59 0.17 -3.61 16 3 C -0.11 -2.31 4.67 30.59 0.14 -2.16 16 4 C -0.55 -14.81 2.32 30.60 0.07 -14.73 16 5 H 0.16 3.58 7.97 -2.39 -0.02 3.56 16 6 C -0.10 -2.59 5.36 30.59 0.16 -2.43 16 7 C -0.20 -5.62 8.35 71.98 0.60 -5.02 16 8 S 2.58 105.53 4.17 -56.49 -0.24 105.30 16 9 O -0.99 -49.11 15.87 -127.65 -2.03 -51.14 16 10 O -0.98 -42.14 12.31 -127.65 -1.57 -43.71 16 11 N -0.93 -40.71 1.30 -343.13 -0.45 -41.15 16 12 C 0.26 13.83 3.04 85.63 0.26 14.09 16 13 C -0.56 -33.08 9.35 25.60 0.24 -32.84 16 14 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 15 C 0.02 1.16 5.46 84.65 0.46 1.62 16 16 N -0.92 -54.40 13.29 21.45 0.28 -54.12 16 17 Si 0.95 45.97 29.54 68.60 2.03 48.00 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 21 C 0.17 6.53 5.07 38.21 0.19 6.73 16 22 C -0.22 -7.59 9.08 22.40 0.20 -7.38 16 23 C -0.09 -2.32 10.04 22.25 0.22 -2.10 16 24 C -0.15 -3.55 10.04 22.29 0.22 -3.33 16 25 C -0.09 -2.55 10.04 22.25 0.22 -2.32 16 26 C -0.16 -5.48 8.60 22.40 0.19 -5.29 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.05 1.60 5.47 -2.39 -0.01 1.59 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.13 1.82 8.13 -2.39 -0.02 1.80 16 34 H 0.12 2.09 8.11 -2.39 -0.02 2.07 16 35 H 0.06 1.88 7.76 -2.38 -0.02 1.86 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 2.11 3.01 -2.38 -0.01 2.10 16 38 H 0.07 1.84 7.50 -2.39 -0.02 1.82 16 39 H 0.04 2.26 5.65 -2.39 -0.01 2.25 16 40 H 0.03 1.85 6.81 -2.39 -0.02 1.83 16 41 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.15 5.36 4.86 -2.91 -0.01 5.35 16 43 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 44 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 46 H 0.11 4.35 6.25 -2.91 -0.02 4.33 16 Total: -1.00 -74.47 365.42 3.08 -71.39 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.96 Total: 26.12 kcal Atomic # 6 Polarization: -64.76 SS G_CDS: 4.09 Total: -60.68 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -0.16 Total: -95.27 kcal Atomic # 8 Polarization: -91.25 SS G_CDS: -3.60 Total: -94.85 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 105.53 SS G_CDS: -0.24 Total: 105.30 kcal Total: -74.47 3.08 -71.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517069296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.914 kcal (2) G-P(sol) polarization free energy of solvation -74.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds