Wall clock time and date at job start Tue Mar 31 2020 14:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 C 1.53003 * 109.46695 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47042 * 60.00359 * 4 3 2 6 6 C 1.52995 * 109.47619 * 299.99786 * 4 3 2 7 7 N 1.46504 * 109.46807 * 180.02562 * 4 3 2 8 8 S 1.65600 * 120.00064 * 190.28359 * 7 4 3 9 9 O 1.42104 * 104.27578 * 312.72236 * 8 7 4 10 10 O 1.42098 * 104.27960 * 184.86281 * 8 7 4 11 11 C 1.81408 * 104.44957 * 68.79216 * 8 7 4 12 12 C 1.50701 * 109.47129 * 170.73075 * 11 8 7 13 13 C 1.38632 * 119.74918 * 270.25405 * 12 11 8 14 14 C 1.37616 * 120.24686 * 180.25795 * 13 12 11 15 15 C 1.40717 * 119.74738 * 359.46727 * 14 13 12 16 16 C 1.41393 * 120.24596 * 180.29393 * 15 14 13 17 17 H 1.08004 * 119.99825 * 32.18424 * 16 15 14 18 18 C 1.39939 * 120.00191 * 212.17442 * 16 15 14 19 19 N 1.30821 * 119.99995 * 18.03202 * 18 16 15 20 20 Si 1.86797 * 120.00044 * 198.03214 * 18 16 15 21 21 H 1.48501 * 109.47267 * 90.00062 * 20 18 16 22 22 H 1.48500 * 109.47337 * 209.99780 * 20 18 16 23 23 H 1.48504 * 109.47316 * 330.00125 * 20 18 16 24 24 C 1.40715 * 119.50782 * 0.27441 * 15 14 13 25 25 C 1.37617 * 119.74669 * 0.02562 * 24 15 14 26 26 H 1.09004 * 109.47294 * 300.00020 * 1 2 3 27 27 H 1.09004 * 109.47442 * 60.00055 * 1 2 3 28 28 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47294 * 239.99980 * 2 1 3 30 30 H 1.09004 * 109.47442 * 119.99945 * 2 1 3 31 31 H 1.08999 * 109.46963 * 60.00339 * 3 2 1 32 32 H 1.08997 * 109.47364 * 299.99652 * 3 2 1 33 33 H 1.09009 * 109.46701 * 193.47754 * 5 4 3 34 34 H 1.08995 * 109.46983 * 313.47423 * 5 4 3 35 35 H 1.08996 * 109.47434 * 73.48382 * 5 4 3 36 36 H 1.09002 * 109.47010 * 296.42940 * 6 4 3 37 37 H 1.09002 * 109.46787 * 56.42557 * 6 4 3 38 38 H 1.08998 * 109.47356 * 176.42624 * 6 4 3 39 39 H 0.97003 * 120.00049 * 10.27506 * 7 4 3 40 40 H 1.09002 * 109.46903 * 50.72831 * 11 8 7 41 41 H 1.08998 * 109.47019 * 290.73178 * 11 8 7 42 42 H 1.08008 * 119.87462 * 0.02562 * 13 12 11 43 43 H 1.08009 * 120.12651 * 179.73869 * 14 13 12 44 44 H 0.97005 * 120.00043 * 180.02562 * 19 18 16 45 45 H 1.07994 * 120.12599 * 180.02562 * 24 15 14 46 46 H 1.07999 * 119.87633 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0804 0.7211 -1.2483 6 6 4.0795 0.7215 1.2502 7 7 4.0583 2.8237 0.0013 8 16 5.6648 3.1341 -0.2540 9 8 6.3383 2.2232 0.6039 10 8 5.7840 4.5381 -0.0704 11 6 5.9403 2.6938 -1.9921 12 6 7.3152 3.1451 -2.4128 13 6 7.4909 4.4149 -2.9407 14 6 8.7410 4.8357 -3.3331 15 6 9.8451 3.9757 -3.1863 16 6 11.1352 4.3995 -3.5803 17 1 11.4103 5.4407 -3.4976 18 6 12.0558 3.4699 -4.0770 19 7 11.6422 2.3063 -4.5087 20 14 13.8752 3.8905 -4.1236 21 1 14.5134 3.4696 -2.8505 22 1 14.5185 3.1805 -5.2582 23 1 14.0402 5.3559 -4.2992 24 6 9.6558 2.6910 -2.6443 25 6 8.3956 2.2891 -2.2644 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1438 0.5089 -1.1362 34 1 3.5349 -0.2138 -1.3763 35 1 3.9265 1.3542 -2.1221 36 1 3.7691 1.2711 2.1388 37 1 3.6648 -0.2860 1.2828 38 1 5.1676 0.6656 1.2191 39 1 3.4406 3.5565 0.1511 40 1 5.1910 3.1835 -2.6141 41 1 5.8607 1.6132 -2.1102 42 1 6.6428 5.0751 -3.0478 43 1 8.8749 5.8239 -3.7480 44 1 12.2804 1.6618 -4.8527 45 1 10.4962 2.0230 -2.5268 46 1 8.2478 1.3034 -1.8486 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519637646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:35 Heat of formation + Delta-G solvation = -72.620030 kcal Electronic energy + Delta-G solvation = -25947.235358 eV Core-core repulsion = 22349.007365 eV Total energy + Delta-G solvation = -3598.227993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.75465 -37.79509 -36.53919 -35.43159 -34.11938 -33.89364 -31.64684 -30.31264 -29.47880 -28.35524 -27.05510 -26.85473 -24.11653 -22.60030 -21.18610 -20.38962 -19.70518 -18.87441 -17.43076 -17.39358 -16.26633 -16.01210 -15.50092 -15.34165 -14.79668 -14.65259 -14.25694 -13.92936 -13.91113 -13.82934 -13.40987 -12.77957 -12.68255 -12.55175 -12.34464 -12.10697 -12.05959 -11.91189 -11.76854 -11.68725 -11.58740 -11.53951 -11.39414 -11.22059 -11.18018 -11.06246 -10.88003 -10.77468 -10.64460 -10.36778 -10.20933 -9.77768 -9.53345 -9.43329 -9.21642 -7.61969 -7.38560 -6.88616 -4.47690 0.66664 2.64979 2.93265 3.03655 3.07252 3.08318 3.11408 3.87208 4.19460 4.44759 4.51596 4.57557 4.60676 4.70009 4.85642 4.94803 5.05494 5.20831 5.31023 5.38593 5.43729 5.48461 5.51074 5.54997 5.56675 5.72697 5.80516 5.83398 5.90328 5.98094 6.03540 6.10183 6.18233 6.24209 6.30151 6.50808 6.82146 6.96309 7.05589 7.09891 7.16592 7.47189 7.64833 7.85474 7.92394 8.14118 8.48637 8.74672 8.80925 10.08637 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.002746 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.027278 B =10194.495158 C =10443.528027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.116 4.116 4 C 0.180 3.820 5 C -0.201 4.201 6 C -0.182 4.182 7 N -1.122 6.122 8 S 2.580 3.420 9 O -0.963 6.963 10 O -0.965 6.965 11 C -0.536 4.536 12 C -0.229 4.229 13 C -0.068 4.068 14 C -0.219 4.219 15 C 0.123 3.877 16 C -0.461 4.461 17 H 0.083 0.917 18 C 0.077 3.923 19 N -0.788 5.788 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.159 4.159 25 C -0.085 4.085 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.410 0.590 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.283 0.717 45 H 0.112 0.888 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.048 -5.654 5.320 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.155 4.155 4 C 0.091 3.909 5 C -0.259 4.259 6 C -0.241 4.241 7 N -0.878 5.878 8 S 2.680 3.320 9 O -0.952 6.952 10 O -0.955 6.955 11 C -0.666 4.666 12 C -0.233 4.233 13 C -0.087 4.087 14 C -0.239 4.239 15 C 0.120 3.880 16 C -0.490 4.490 17 H 0.101 0.899 18 C -0.142 4.142 19 N -0.413 5.413 20 Si 0.734 3.266 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.179 4.179 25 C -0.105 4.105 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.243 0.757 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.130 0.870 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.316 -5.699 5.897 18.261 hybrid contribution 0.207 0.183 -0.714 0.766 sum -16.110 -5.516 5.183 17.799 Atomic orbital electron populations 1.21773 0.95828 1.01596 1.01782 1.21718 0.95789 0.96404 1.02822 1.21831 0.93221 0.97674 1.02760 1.20029 0.94575 0.80821 0.95445 1.23025 1.02677 1.02447 0.97775 1.22684 1.04771 0.99872 0.96760 1.56070 1.29312 1.12789 1.89619 1.06424 0.72444 0.74284 0.78884 1.93486 1.72990 1.65543 1.63232 1.93535 1.84617 1.31212 1.86175 1.29522 1.04387 1.10900 1.21828 1.18149 0.90315 0.97300 1.17584 1.20487 0.96770 0.94155 0.97326 1.21074 0.92271 1.00957 1.09586 1.17713 0.92437 0.91146 0.86703 1.19656 0.96394 0.95924 1.37046 0.89883 1.25932 1.01447 0.94215 0.92632 1.69810 1.37130 1.06558 1.27763 0.86282 0.81578 0.80000 0.78742 1.19098 1.20260 1.18488 1.21150 0.95450 0.98351 1.02951 1.20601 0.93184 0.97184 0.99532 0.92822 0.92764 0.92750 0.91243 0.91228 0.91281 0.91194 0.90962 0.89729 0.90690 0.92344 0.91719 0.88814 0.75702 0.86134 0.84962 0.88702 0.88233 0.90594 0.86969 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.88 5.27 -26.73 -0.14 -1.02 16 3 C -0.12 -0.91 4.40 -26.73 -0.12 -1.03 16 4 C 0.18 1.85 0.90 -131.82 -0.12 1.74 16 5 C -0.20 -1.98 6.64 37.16 0.25 -1.73 16 6 C -0.18 -2.05 8.02 37.15 0.30 -1.75 16 7 N -1.12 -13.51 5.45 0.54 0.00 -13.51 16 8 S 2.58 43.47 5.05 -107.50 -0.54 42.93 16 9 O -0.96 -18.49 15.08 -57.54 -0.87 -19.36 16 10 O -0.97 -19.69 18.08 -57.54 -1.04 -20.73 16 11 C -0.54 -8.71 4.54 36.01 0.16 -8.54 16 12 C -0.23 -4.92 5.16 -104.33 -0.54 -5.46 16 13 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 14 C -0.22 -5.37 9.80 -38.87 -0.38 -5.75 16 15 C 0.12 3.26 5.47 -106.82 -0.58 2.67 16 16 C -0.46 -12.00 9.01 -37.75 -0.34 -12.34 16 17 H 0.08 2.08 7.91 -52.48 -0.42 1.66 16 18 C 0.08 1.89 5.07 -17.35 -0.09 1.80 16 19 N -0.79 -19.96 11.52 55.55 0.64 -19.32 16 20 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.16 -4.09 8.67 -38.87 -0.34 -4.43 16 25 C -0.09 -1.98 9.67 -39.66 -0.38 -2.36 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.45 6.16 -51.93 -0.32 0.13 16 30 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.80 6.09 -51.92 -0.32 0.48 16 34 H 0.08 0.65 5.82 -51.93 -0.30 0.35 16 35 H 0.07 0.68 6.82 -51.93 -0.35 0.32 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.58 6.24 -51.93 -0.32 0.25 16 38 H 0.09 1.31 5.68 -51.93 -0.30 1.01 16 39 H 0.41 4.15 8.59 -34.47 -0.30 3.86 16 40 H 0.12 1.64 8.02 -51.92 -0.42 1.22 16 41 H 0.13 1.86 4.76 -51.93 -0.25 1.61 16 42 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 43 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 44 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 45 H 0.11 2.93 6.76 -52.49 -0.35 2.57 16 46 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -31.34 368.84 -10.53 -41.87 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.91 Total: 9.93 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: -2.34 Total: -40.67 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.64 Total: -32.83 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.91 Total: -40.08 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: 43.47 SS G_CDS: -0.54 Total: 42.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.34 -10.53 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519637646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.749 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds