Wall clock time and date at job start Tue Mar 31 2020 14:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 C 1.53003 * 109.46695 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47042 * 60.00359 * 4 3 2 6 6 C 1.52995 * 109.47619 * 299.99786 * 4 3 2 7 7 N 1.46504 * 109.46807 * 180.02562 * 4 3 2 8 8 S 1.65600 * 120.00064 * 190.28359 * 7 4 3 9 9 O 1.42104 * 104.27578 * 312.72236 * 8 7 4 10 10 O 1.42098 * 104.27960 * 184.86281 * 8 7 4 11 11 C 1.81408 * 104.44957 * 68.79216 * 8 7 4 12 12 C 1.50701 * 109.47129 * 170.73075 * 11 8 7 13 13 C 1.38632 * 119.74918 * 270.25405 * 12 11 8 14 14 C 1.37616 * 120.24686 * 180.25795 * 13 12 11 15 15 C 1.40717 * 119.74738 * 359.46727 * 14 13 12 16 16 C 1.41393 * 120.24596 * 180.29393 * 15 14 13 17 17 H 1.08004 * 119.99825 * 32.18424 * 16 15 14 18 18 C 1.39939 * 120.00191 * 212.17442 * 16 15 14 19 19 N 1.30821 * 119.99995 * 18.03202 * 18 16 15 20 20 Si 1.86797 * 120.00044 * 198.03214 * 18 16 15 21 21 H 1.48501 * 109.47267 * 90.00062 * 20 18 16 22 22 H 1.48500 * 109.47337 * 209.99780 * 20 18 16 23 23 H 1.48504 * 109.47316 * 330.00125 * 20 18 16 24 24 C 1.40715 * 119.50782 * 0.27441 * 15 14 13 25 25 C 1.37617 * 119.74669 * 0.02562 * 24 15 14 26 26 H 1.09004 * 109.47294 * 300.00020 * 1 2 3 27 27 H 1.09004 * 109.47442 * 60.00055 * 1 2 3 28 28 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47294 * 239.99980 * 2 1 3 30 30 H 1.09004 * 109.47442 * 119.99945 * 2 1 3 31 31 H 1.08999 * 109.46963 * 60.00339 * 3 2 1 32 32 H 1.08997 * 109.47364 * 299.99652 * 3 2 1 33 33 H 1.09009 * 109.46701 * 193.47754 * 5 4 3 34 34 H 1.08995 * 109.46983 * 313.47423 * 5 4 3 35 35 H 1.08996 * 109.47434 * 73.48382 * 5 4 3 36 36 H 1.09002 * 109.47010 * 296.42940 * 6 4 3 37 37 H 1.09002 * 109.46787 * 56.42557 * 6 4 3 38 38 H 1.08998 * 109.47356 * 176.42624 * 6 4 3 39 39 H 0.97003 * 120.00049 * 10.27506 * 7 4 3 40 40 H 1.09002 * 109.46903 * 50.72831 * 11 8 7 41 41 H 1.08998 * 109.47019 * 290.73178 * 11 8 7 42 42 H 1.08008 * 119.87462 * 0.02562 * 13 12 11 43 43 H 1.08009 * 120.12651 * 179.73869 * 14 13 12 44 44 H 0.97005 * 120.00043 * 180.02562 * 19 18 16 45 45 H 1.07994 * 120.12599 * 180.02562 * 24 15 14 46 46 H 1.07999 * 119.87633 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0804 0.7211 -1.2483 6 6 4.0795 0.7215 1.2502 7 7 4.0583 2.8237 0.0013 8 16 5.6648 3.1341 -0.2540 9 8 6.3383 2.2232 0.6039 10 8 5.7840 4.5381 -0.0704 11 6 5.9403 2.6938 -1.9921 12 6 7.3152 3.1451 -2.4128 13 6 7.4909 4.4149 -2.9407 14 6 8.7410 4.8357 -3.3331 15 6 9.8451 3.9757 -3.1863 16 6 11.1352 4.3995 -3.5803 17 1 11.4103 5.4407 -3.4976 18 6 12.0558 3.4699 -4.0770 19 7 11.6422 2.3063 -4.5087 20 14 13.8752 3.8905 -4.1236 21 1 14.5134 3.4696 -2.8505 22 1 14.5185 3.1805 -5.2582 23 1 14.0402 5.3559 -4.2992 24 6 9.6558 2.6910 -2.6443 25 6 8.3956 2.2891 -2.2644 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1438 0.5089 -1.1362 34 1 3.5349 -0.2138 -1.3763 35 1 3.9265 1.3542 -2.1221 36 1 3.7691 1.2711 2.1388 37 1 3.6648 -0.2860 1.2828 38 1 5.1676 0.6656 1.2191 39 1 3.4406 3.5565 0.1511 40 1 5.1910 3.1835 -2.6141 41 1 5.8607 1.6132 -2.1102 42 1 6.6428 5.0751 -3.0478 43 1 8.8749 5.8239 -3.7480 44 1 12.2804 1.6618 -4.8527 45 1 10.4962 2.0230 -2.5268 46 1 8.2478 1.3034 -1.8486 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519637646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:34 Heat of formation + Delta-G solvation = -92.420972 kcal Electronic energy + Delta-G solvation = -25948.093992 eV Core-core repulsion = 22349.007365 eV Total energy + Delta-G solvation = -3599.086626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.64653 -39.54653 -37.97394 -36.89691 -35.90935 -34.58118 -33.32454 -31.33503 -31.22252 -29.82289 -28.12202 -27.54327 -25.81132 -23.25707 -23.04226 -22.11289 -20.54056 -20.13968 -19.27539 -18.61675 -17.47821 -17.37283 -17.08502 -16.27917 -16.05319 -15.94117 -15.68308 -15.54323 -15.07384 -14.68847 -14.39117 -14.13817 -13.93133 -13.81487 -13.64214 -13.53058 -13.37093 -13.23665 -13.08086 -12.93978 -12.86383 -12.81339 -12.63533 -12.42754 -12.35816 -12.28992 -12.12902 -11.73908 -11.67234 -11.57810 -11.40566 -11.27684 -11.21056 -11.04183 -10.44149 -9.49332 -9.23002 -8.70866 -6.41633 -0.69488 0.87272 1.02747 1.37507 1.48388 1.50691 1.90409 2.19105 2.64084 2.90499 3.28392 3.60239 3.68709 3.79600 3.88531 4.01454 4.07152 4.20024 4.33205 4.40827 4.44525 4.48935 4.59376 4.71877 4.77219 4.87386 4.93077 4.95074 4.98148 5.04245 5.09639 5.13317 5.18980 5.19400 5.28440 5.31462 5.35512 5.49141 5.57967 5.60623 5.66040 5.80234 5.98447 6.01579 6.21050 6.27941 6.58648 6.85344 6.91059 8.29301 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.002746 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.027278 B =10194.495158 C =10443.528027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.110 4.110 4 C 0.175 3.825 5 C -0.212 4.212 6 C -0.187 4.187 7 N -1.105 6.105 8 S 2.599 3.401 9 O -0.989 6.989 10 O -1.003 7.003 11 C -0.540 4.540 12 C -0.221 4.221 13 C -0.077 4.077 14 C -0.239 4.239 15 C 0.090 3.910 16 C -0.502 4.502 17 H 0.080 0.920 18 C 0.037 3.963 19 N -0.823 5.823 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.258 1.258 24 C -0.185 4.185 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.422 0.578 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.291 0.709 45 H 0.096 0.904 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.522 -6.414 5.313 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.149 4.149 4 C 0.087 3.913 5 C -0.270 4.270 6 C -0.246 4.246 7 N -0.865 5.865 8 S 2.698 3.302 9 O -0.979 6.979 10 O -0.993 6.993 11 C -0.670 4.670 12 C -0.225 4.225 13 C -0.097 4.097 14 C -0.259 4.259 15 C 0.087 3.913 16 C -0.531 4.531 17 H 0.098 0.902 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.188 1.188 22 H -0.190 1.190 23 H -0.181 1.181 24 C -0.204 4.204 25 C -0.115 4.115 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.258 0.742 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.781 -6.442 5.878 20.707 hybrid contribution 0.673 0.333 -0.606 0.965 sum -18.107 -6.109 5.272 19.824 Atomic orbital electron populations 1.21764 0.95249 1.01985 1.01932 1.21733 0.96266 0.95575 1.03156 1.21817 0.90845 0.98712 1.03569 1.20277 0.96340 0.79316 0.95364 1.23138 1.02102 1.03979 0.97784 1.22714 1.02982 1.01558 0.97303 1.55631 1.27506 1.14353 1.89025 1.05341 0.73405 0.72910 0.78511 1.93477 1.74536 1.65922 1.63989 1.93491 1.85779 1.33380 1.86667 1.29657 1.02073 1.13095 1.22161 1.18584 0.92410 0.96418 1.15095 1.20896 0.96927 0.95121 0.96717 1.21321 0.92967 1.01266 1.10297 1.18054 0.93444 0.92028 0.87747 1.19859 0.97555 0.96338 1.39387 0.90239 1.26751 1.05669 0.93852 0.91574 1.69849 1.38800 1.07578 1.28584 0.85201 0.75703 0.79830 0.78985 1.18793 1.19000 1.18122 1.21153 0.96246 0.98403 1.04644 1.20929 0.92874 0.98536 0.99132 0.92828 0.92497 0.92301 0.90592 0.91248 0.90933 0.90030 0.92431 0.87312 0.89454 0.92569 0.89376 0.91688 0.74197 0.82566 0.82362 0.85677 0.87649 0.89886 0.88617 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.13 -1.29 5.27 30.59 0.16 -1.13 16 3 C -0.11 -1.32 4.40 30.60 0.13 -1.19 16 4 C 0.17 3.06 0.90 3.60 0.00 3.07 16 5 C -0.21 -3.42 6.64 71.98 0.48 -2.94 16 6 C -0.19 -3.82 8.02 71.98 0.58 -3.24 16 7 N -1.11 -23.56 5.45 -152.21 -0.83 -24.39 16 8 S 2.60 83.08 5.05 -56.49 -0.29 82.80 16 9 O -0.99 -37.31 15.08 -127.65 -1.92 -39.24 16 10 O -1.00 -39.70 18.08 -127.65 -2.31 -42.01 16 11 C -0.54 -16.01 4.54 71.24 0.32 -15.69 16 12 C -0.22 -9.28 5.16 -19.67 -0.10 -9.38 16 13 C -0.08 -3.43 9.67 22.22 0.21 -3.22 16 14 C -0.24 -12.02 9.80 22.73 0.22 -11.79 16 15 C 0.09 4.97 5.47 -21.29 -0.12 4.85 16 16 C -0.50 -27.43 9.01 23.46 0.21 -27.22 16 17 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 18 C 0.04 1.89 5.07 85.26 0.43 2.32 16 19 N -0.82 -43.17 11.52 21.82 0.25 -42.92 16 20 Si 0.98 38.47 29.60 68.60 2.03 40.50 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 C -0.18 -9.89 8.67 22.73 0.20 -9.69 16 25 C -0.10 -4.44 9.67 22.22 0.21 -4.23 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.67 6.16 -2.39 -0.01 0.65 16 30 H 0.07 0.70 6.35 -2.39 -0.02 0.69 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.11 6.09 -2.38 -0.01 1.10 16 34 H 0.11 1.23 5.82 -2.39 -0.01 1.21 16 35 H 0.09 1.19 6.82 -2.39 -0.02 1.18 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.34 6.24 -2.39 -0.01 1.33 16 38 H 0.06 1.75 5.68 -2.39 -0.01 1.73 16 39 H 0.42 7.27 8.59 -96.74 -0.83 6.44 16 40 H 0.16 3.55 8.02 -2.39 -0.02 3.53 16 41 H 0.16 3.94 4.76 -2.39 -0.01 3.93 16 42 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.29 13.71 8.30 -92.70 -0.77 12.94 16 45 H 0.10 5.29 6.76 -2.91 -0.02 5.27 16 46 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -71.01 368.84 0.76 -70.26 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.16 Total: 35.12 kcal Atomic # 6 Polarization: -83.78 SS G_CDS: 3.67 Total: -80.12 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -0.58 Total: -67.31 kcal Atomic # 8 Polarization: -77.01 SS G_CDS: -4.23 Total: -81.24 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: 83.08 SS G_CDS: -0.29 Total: 82.80 kcal Total: -71.01 0.76 -70.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519637646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.164 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds