Wall clock time and date at job start Tue Mar 31 2020 14:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 8 7 11 11 S 1.65599 * 120.00174 * 164.99886 * 10 9 8 12 12 O 1.42104 * 104.27755 * 181.07595 * 11 10 9 13 13 O 1.42101 * 104.27591 * 308.93397 * 11 10 9 14 14 C 1.81392 * 104.44909 * 65.00454 * 11 10 9 15 15 C 1.52994 * 109.47496 * 180.02562 * 14 11 10 16 16 C 1.50698 * 109.47907 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99485 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00399 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00404 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47017 * 59.99782 * 20 18 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47044 * 300.00350 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 25 25 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 26 26 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 27 27 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 28 28 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 30 30 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 32 32 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 33 33 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 36 36 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 37 37 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 38 38 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 39 39 H 0.97003 * 120.00105 * 345.00741 * 10 9 8 40 40 H 1.09004 * 109.47151 * 300.00032 * 14 11 10 41 41 H 1.09001 * 109.47402 * 59.99741 * 14 11 10 42 42 H 1.09002 * 109.47395 * 300.00028 * 15 14 11 43 43 H 1.09005 * 109.47485 * 59.99731 * 15 14 11 44 44 H 0.96997 * 120.00256 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99934 * 179.72684 * 24 7 6 46 46 H 1.07999 * 120.00005 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 7 5.2891 -2.8244 6.3322 11 16 6.8708 -2.6627 6.7953 12 8 6.9814 -3.4764 7.9550 13 8 7.6121 -2.9584 5.6195 14 6 7.0384 -0.9095 7.2294 15 6 8.4740 -0.6302 7.6784 16 6 8.6135 0.8265 8.0385 17 1 7.7632 1.4871 7.9550 18 6 9.8265 1.3158 8.4745 19 7 10.8618 0.5113 8.5767 20 14 9.9995 3.1216 8.9202 21 1 9.0621 3.4511 10.0238 22 1 11.3926 3.3923 9.3573 23 1 9.6810 3.9569 7.7343 24 6 2.1532 -0.8940 3.6146 25 6 1.6980 -0.2384 2.4860 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.0878 -2.2035 0.1226 34 1 3.9082 -3.3645 2.1330 35 1 2.7358 -2.6006 5.5283 36 1 3.5755 -3.7868 4.5005 37 1 5.5203 -2.2585 4.3257 38 1 4.6807 -1.0723 5.3534 39 1 4.6853 -3.3766 6.8532 40 1 6.8043 -0.2958 6.3595 41 1 6.3504 -0.6685 8.0398 42 1 8.7086 -1.2439 8.5482 43 1 9.1617 -0.8711 6.8677 44 1 11.7151 0.8555 8.8838 45 1 1.8881 -0.5282 4.5956 46 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520392705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:13 Heat of formation + Delta-G solvation = -84.529121 kcal Electronic energy + Delta-G solvation = -24557.920618 eV Core-core repulsion = 20959.176208 eV Total energy + Delta-G solvation = -3598.744410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.95305 -36.85220 -36.47636 -35.43723 -35.08502 -33.88065 -31.68409 -31.15051 -31.09479 -27.76665 -27.47576 -25.58952 -23.91678 -22.99972 -21.88995 -21.57142 -20.14638 -18.92527 -17.47190 -16.67302 -16.50658 -16.10139 -15.83857 -15.42736 -15.23826 -14.71054 -14.57446 -14.51318 -14.03597 -13.96424 -13.87823 -13.47386 -13.34998 -12.90103 -12.58311 -12.51680 -12.41324 -11.95219 -11.90182 -11.72874 -11.57345 -11.52172 -11.49272 -11.35238 -11.30623 -11.06086 -10.95831 -10.90776 -10.84533 -10.43009 -10.36365 -9.78031 -9.48803 -9.09762 -9.02017 -8.70055 -8.49326 -6.11564 -4.17176 0.80140 1.13223 1.22913 3.15761 3.27576 3.32360 3.34191 3.54007 4.26275 4.34050 4.38793 4.45479 4.63072 4.70651 4.75621 4.82150 4.85939 4.91374 5.01626 5.10791 5.23469 5.25370 5.28287 5.32844 5.38594 5.48837 5.49641 5.54301 5.63171 5.69275 5.71202 5.77406 5.84056 5.88642 5.90404 5.94216 6.05328 6.25180 6.43401 6.44703 6.50333 6.81652 7.10386 7.31222 7.37697 7.81156 8.18556 8.85962 9.47438 10.99441 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002597 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.207051 B =10778.106823 C =12479.137021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.086 4.086 8 C -0.086 4.086 9 C 0.120 3.880 10 N -1.129 6.129 11 S 2.595 3.405 12 O -0.968 6.968 13 O -0.967 6.967 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.111 4.111 25 C -0.114 4.114 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.412 0.588 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.266 0.734 45 H 0.123 0.877 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.387 -2.984 -15.368 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.081 4.081 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.086 4.086 8 C -0.124 4.124 9 C -0.006 4.006 10 N -0.886 5.886 11 S 2.692 3.308 12 O -0.959 6.959 13 O -0.957 6.957 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.129 4.129 25 C -0.132 4.132 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.245 0.755 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.437 -3.617 -15.433 26.661 hybrid contribution -0.393 1.401 0.555 1.557 sum -21.829 -2.216 -14.878 26.510 Atomic orbital electron populations 1.21857 0.94402 1.01934 1.01907 1.20132 0.95879 0.96160 0.95420 1.21867 1.01492 0.94987 1.01908 1.19863 0.97806 0.95728 0.94665 1.21045 0.98182 0.95649 0.98572 1.21094 0.99668 1.00175 0.91906 1.19747 0.98121 0.96280 0.94499 1.20766 0.96284 1.00009 0.95374 1.21251 0.96054 0.95978 0.87326 1.55809 1.31777 1.63577 1.37467 1.05487 0.72336 0.78864 0.74109 1.93552 1.84686 1.66613 1.50999 1.93538 1.69682 1.83881 1.48594 1.30440 1.10536 1.20717 1.10616 1.18957 0.85040 0.99512 0.97596 1.20965 0.96337 0.93222 1.45488 0.92126 1.25066 0.95780 0.98283 0.95361 1.69942 1.01395 1.35365 1.46158 0.86529 0.77242 0.84578 0.78912 1.20102 1.21078 1.20074 1.21066 0.97855 0.95291 0.98726 1.20941 1.00443 0.99878 0.91906 0.92440 0.92446 0.92597 0.90553 0.92335 0.92446 0.92391 0.86185 0.85835 0.90240 0.90119 0.90069 0.91594 0.75515 0.86366 0.86125 0.94825 0.94819 0.92476 0.85923 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.01 37.16 0.33 -0.52 16 2 C -0.06 -0.40 3.09 -91.78 -0.28 -0.68 16 3 C -0.15 -0.97 9.01 37.16 0.33 -0.64 16 4 C -0.08 -0.69 4.78 -104.63 -0.50 -1.19 16 5 C -0.12 -1.04 9.67 -39.58 -0.38 -1.42 16 6 C -0.11 -1.04 9.70 -39.58 -0.38 -1.42 16 7 C -0.09 -0.81 5.13 -104.62 -0.54 -1.35 16 8 C -0.09 -0.75 5.49 -27.88 -0.15 -0.91 16 9 C 0.12 1.34 6.11 -4.04 -0.02 1.31 16 10 N -1.13 -14.08 5.88 -10.61 -0.06 -14.15 16 11 S 2.59 45.78 5.46 -107.50 -0.59 45.20 16 12 O -0.97 -19.94 18.08 -57.54 -1.04 -20.98 16 13 O -0.97 -20.03 17.50 -57.54 -1.01 -21.03 16 14 C -0.59 -11.21 6.01 37.15 0.22 -10.98 16 15 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 16 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.11 -1.00 9.70 -39.58 -0.38 -1.39 16 25 C -0.11 -0.99 8.71 -39.58 -0.34 -1.33 16 26 H 0.06 0.34 7.39 -51.93 -0.38 -0.05 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 33 H 0.12 0.87 7.95 -52.49 -0.42 0.46 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.41 4.20 8.62 -34.47 -0.30 3.90 16 40 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 41 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 46 H 0.12 0.87 7.10 -52.49 -0.37 0.49 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -35.12 392.66 -11.41 -46.53 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.69 Total: 1.27 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: -2.65 Total: -33.15 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.67 Total: -40.00 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -2.05 Total: -42.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.59 Total: 45.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.12 -11.41 -46.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520392705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.997 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds