Wall clock time and date at job start Tue Mar 31 2020 14:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47383 * 119.99852 * 2 1 3 5 5 C 1.38238 * 119.99728 * 120.00184 * 4 2 1 6 6 C 1.38235 * 120.00108 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 8 7 11 11 S 1.65599 * 120.00174 * 164.99886 * 10 9 8 12 12 O 1.42104 * 104.27755 * 181.07595 * 11 10 9 13 13 O 1.42101 * 104.27591 * 308.93397 * 11 10 9 14 14 C 1.81392 * 104.44909 * 65.00454 * 11 10 9 15 15 C 1.52994 * 109.47496 * 180.02562 * 14 11 10 16 16 C 1.50698 * 109.47907 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99485 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00399 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00404 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47017 * 59.99782 * 20 18 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47044 * 300.00350 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 25 25 C 1.38234 * 120.00209 * 300.02591 * 4 2 1 26 26 H 1.09001 * 109.46954 * 299.99809 * 1 2 3 27 27 H 1.09001 * 109.47412 * 59.99879 * 1 2 3 28 28 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46954 * 240.00191 * 2 1 3 30 30 H 1.09001 * 109.47293 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47105 * 300.00308 * 3 2 1 32 32 H 1.09001 * 109.47080 * 60.00267 * 3 2 1 33 33 H 1.08000 * 120.00578 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 36 36 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 37 37 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 38 38 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 39 39 H 0.97003 * 120.00105 * 345.00741 * 10 9 8 40 40 H 1.09004 * 109.47151 * 300.00032 * 14 11 10 41 41 H 1.09001 * 109.47402 * 59.99741 * 14 11 10 42 42 H 1.09002 * 109.47395 * 300.00028 * 15 14 11 43 43 H 1.09005 * 109.47485 * 59.99731 * 15 14 11 44 44 H 0.96997 * 120.00256 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99934 * 179.72684 * 24 7 6 46 46 H 1.07999 * 120.00005 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8342 1.1035 6 6 3.2876 -2.4862 2.2321 7 6 2.9528 -2.0145 3.4877 8 6 3.4543 -2.7257 4.7182 9 6 4.8018 -2.1336 5.1358 10 7 5.2891 -2.8244 6.3322 11 16 6.8708 -2.6627 6.7953 12 8 6.9814 -3.4764 7.9550 13 8 7.6121 -2.9584 5.6195 14 6 7.0384 -0.9095 7.2294 15 6 8.4740 -0.6302 7.6784 16 6 8.6135 0.8265 8.0385 17 1 7.7632 1.4871 7.9550 18 6 9.8265 1.3158 8.4745 19 7 10.8618 0.5113 8.5767 20 14 9.9995 3.1216 8.9202 21 1 9.0621 3.4511 10.0238 22 1 11.3926 3.3923 9.3573 23 1 9.6810 3.9569 7.7343 24 6 2.1532 -0.8940 3.6146 25 6 1.6980 -0.2384 2.4860 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.0878 -2.2035 0.1226 34 1 3.9082 -3.3645 2.1330 35 1 2.7358 -2.6006 5.5283 36 1 3.5755 -3.7868 4.5005 37 1 5.5203 -2.2585 4.3257 38 1 4.6807 -1.0723 5.3534 39 1 4.6853 -3.3766 6.8532 40 1 6.8043 -0.2958 6.3595 41 1 6.3504 -0.6685 8.0398 42 1 8.7086 -1.2439 8.5482 43 1 9.1617 -0.8711 6.8677 44 1 11.7151 0.8555 8.8838 45 1 1.8881 -0.5282 4.5956 46 1 1.0771 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520392705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:11 Heat of formation + Delta-G solvation = -106.960199 kcal Electronic energy + Delta-G solvation = -24558.893303 eV Core-core repulsion = 20959.176208 eV Total energy + Delta-G solvation = -3599.717094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58671 -38.17257 -37.48724 -36.98391 -35.89829 -35.88364 -33.11432 -32.44061 -31.74175 -28.52543 -27.95870 -27.58041 -24.68023 -23.67761 -23.57936 -22.46973 -20.76017 -20.28629 -19.09092 -18.25826 -17.44698 -17.22565 -17.00272 -16.54399 -16.47218 -16.11459 -15.77815 -15.38977 -15.07066 -14.69643 -14.58206 -14.45038 -14.42864 -14.08503 -13.72657 -13.64989 -13.39237 -13.19483 -13.10829 -13.03107 -12.90005 -12.79619 -12.62258 -12.58397 -12.38123 -12.21367 -12.15301 -11.99692 -11.93869 -11.72658 -11.49515 -11.44860 -11.16537 -10.63479 -10.34373 -9.75390 -9.36803 -8.25449 -6.39499 -0.65520 0.45678 0.56718 1.40804 1.44325 1.52457 1.88462 2.38342 2.82241 2.88249 3.07823 3.30320 3.75699 3.86604 3.92948 4.04841 4.09244 4.10184 4.17301 4.21868 4.34604 4.35201 4.56449 4.60294 4.64476 4.67568 4.71369 4.78282 4.82572 4.96914 5.01049 5.01647 5.11142 5.20286 5.25541 5.28306 5.28868 5.30040 5.37688 5.40548 5.60448 5.68851 5.77371 5.81139 6.06953 6.15549 6.20436 6.74096 7.30574 8.86594 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002597 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.207051 B =10778.106823 C =12479.137021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.086 4.086 5 C -0.129 4.129 6 C -0.124 4.124 7 C -0.097 4.097 8 C -0.078 4.078 9 C 0.112 3.888 10 N -1.107 6.107 11 S 2.624 3.376 12 O -0.999 6.999 13 O -0.999 6.999 14 C -0.589 4.589 15 C 0.019 3.981 16 C -0.539 4.539 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.263 1.263 24 C -0.119 4.119 25 C -0.122 4.122 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.427 0.573 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.007 0.993 43 H 0.006 0.994 44 H 0.267 0.733 45 H 0.137 0.863 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.756 -1.553 -15.762 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.098 4.098 8 C -0.116 4.116 9 C -0.014 4.014 10 N -0.869 5.869 11 S 2.720 3.280 12 O -0.989 6.989 13 O -0.989 6.989 14 C -0.721 4.721 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.188 1.188 24 C -0.136 4.136 25 C -0.140 4.140 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.263 0.737 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.076 0.924 45 H 0.155 0.845 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.823 -2.186 -15.821 28.681 hybrid contribution 0.275 0.912 0.602 1.127 sum -23.548 -1.274 -15.219 28.067 Atomic orbital electron populations 1.21834 0.93599 1.01891 1.02491 1.20167 0.96505 0.96078 0.94832 1.21857 1.00777 0.94991 1.02501 1.20118 0.97459 0.95632 0.95432 1.21272 0.98411 0.95979 0.99070 1.21291 1.00005 1.00612 0.92344 1.19839 0.98634 0.96738 0.94559 1.20715 0.95138 1.00004 0.95790 1.21493 0.96987 0.96885 0.86069 1.55248 1.29988 1.63709 1.37942 1.04319 0.73188 0.77632 0.72841 1.93504 1.85805 1.67231 1.52375 1.93498 1.71629 1.84048 1.49737 1.30337 1.06670 1.22762 1.12307 1.18820 0.88778 0.98596 0.95746 1.21495 0.96944 0.94438 1.44962 0.90615 1.26126 0.95471 1.03475 0.95247 1.70095 1.02063 1.37809 1.47434 0.85368 0.77326 0.78391 0.79195 1.18756 1.21018 1.18758 1.21307 0.97641 0.95121 0.99577 1.21173 1.00598 1.00338 0.91925 0.92341 0.91389 0.92944 0.90224 0.93412 0.91313 0.92362 0.85157 0.85454 0.88297 0.89681 0.91365 0.90135 0.73668 0.84191 0.83794 0.97485 0.97559 0.92411 0.84469 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.01 71.98 0.65 -0.80 16 2 C -0.06 -0.71 3.09 -11.54 -0.04 -0.75 16 3 C -0.14 -1.72 9.01 71.98 0.65 -1.08 16 4 C -0.09 -1.38 4.78 -19.87 -0.09 -1.47 16 5 C -0.13 -2.19 9.67 22.27 0.22 -1.98 16 6 C -0.12 -2.23 9.70 22.27 0.22 -2.01 16 7 C -0.10 -1.66 5.13 -19.86 -0.10 -1.77 16 8 C -0.08 -1.19 5.49 29.85 0.16 -1.02 16 9 C 0.11 2.24 6.11 86.38 0.53 2.77 16 10 N -1.11 -25.43 5.88 -187.49 -1.10 -26.54 16 11 S 2.62 91.49 5.46 -56.49 -0.31 91.18 16 12 O -1.00 -41.10 18.08 -127.65 -2.31 -43.41 16 13 O -1.00 -41.70 17.50 -127.65 -2.23 -43.94 16 14 C -0.59 -21.88 6.01 71.98 0.43 -21.45 16 15 C 0.02 1.02 4.98 29.85 0.15 1.17 16 16 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 17 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.93 -57.13 13.29 21.44 0.28 -56.85 16 20 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.12 -1.90 9.70 22.27 0.22 -1.68 16 25 C -0.12 -1.92 8.71 22.27 0.19 -1.73 16 26 H 0.06 0.58 7.39 -2.39 -0.02 0.57 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.92 7.88 -2.39 -0.02 0.90 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.68 7.39 -2.39 -0.02 0.67 16 33 H 0.13 1.81 7.95 -2.91 -0.02 1.78 16 34 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.10 1.14 8.08 -2.39 -0.02 1.12 16 36 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 37 H 0.07 1.59 7.69 -2.39 -0.02 1.57 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.43 7.62 8.62 -96.74 -0.83 6.79 16 40 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 41 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.13 1.66 7.10 -2.91 -0.02 1.64 16 Total: -1.00 -76.50 392.66 0.35 -76.15 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.12 Total: 19.36 kcal Atomic # 6 Polarization: -65.16 SS G_CDS: 3.87 Total: -61.29 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -0.82 Total: -83.39 kcal Atomic # 8 Polarization: -82.81 SS G_CDS: -4.54 Total: -87.35 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 91.49 SS G_CDS: -0.31 Total: 91.18 kcal Total: -76.50 0.35 -76.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520392705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.811 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds