Wall clock time and date at job start Tue Mar 31 2020 13:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38262 * 119.96842 * 2 1 4 4 C 1.38268 * 120.11058 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97309 * 179.97438 * 4 3 2 6 6 C 1.38147 * 120.05310 * 359.97438 * 4 3 2 7 7 C 1.38735 * 119.94808 * 359.97438 * 6 4 3 8 8 O 1.35900 * 120.05988 * 180.02562 * 7 6 4 9 9 C 1.42895 * 117.00135 * 184.48404 * 8 7 6 10 10 C 1.50699 * 109.47086 * 179.13607 * 9 8 7 11 11 O 1.21280 * 119.99802 * 55.14362 * 10 9 8 12 12 N 1.34772 * 119.99982 * 235.14235 * 10 9 8 13 13 C 1.37144 * 119.99881 * 180.66976 * 12 10 9 14 14 H 1.08000 * 119.99867 * 230.71267 * 13 12 10 15 15 C 1.38888 * 119.99942 * 50.71861 * 13 12 10 16 16 N 1.31422 * 120.00067 * 339.29894 * 15 13 12 17 17 Si 1.86799 * 120.00225 * 159.30625 * 15 13 12 18 18 H 1.48501 * 109.47233 * 59.99306 * 17 15 13 19 19 H 1.48497 * 109.47367 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46823 * 299.99633 * 17 15 13 21 21 C 1.39787 * 120.00495 * 0.66470 * 12 10 9 22 22 C 1.38962 * 120.07820 * 126.36981 * 21 12 10 23 23 C 1.38079 * 119.92308 * 179.97438 * 22 21 12 24 24 C 1.38306 * 120.07683 * 0.02562 * 23 22 21 25 25 C 1.38304 * 120.15675 * 0.02562 * 24 23 22 26 26 C 1.38079 * 120.08030 * 359.97438 * 25 24 23 27 27 C 1.38147 * 119.97128 * 180.23582 * 2 1 3 28 28 H 1.08995 * 109.47477 * 89.99711 * 1 2 3 29 29 H 1.09004 * 109.46954 * 210.00072 * 1 2 3 30 30 H 1.09003 * 109.46984 * 329.99521 * 1 2 3 31 31 H 1.08000 * 119.94665 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47517 * 269.97887 * 5 4 3 33 33 H 1.08996 * 109.46960 * 29.98270 * 5 4 3 34 34 H 1.08997 * 109.46975 * 149.98285 * 5 4 3 35 35 H 1.08000 * 120.02533 * 179.97438 * 6 4 3 36 36 H 1.09003 * 109.47050 * 59.13697 * 9 8 7 37 37 H 1.08995 * 109.47126 * 299.14321 * 9 8 7 38 38 H 0.97000 * 120.00122 * 184.38940 * 16 15 13 39 39 H 1.08002 * 120.03469 * 359.70591 * 22 21 12 40 40 H 1.08001 * 119.96358 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.91878 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.95977 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.04075 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.02966 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.3300 2.5085 -0.0011 6 6 4.2752 0.0072 -0.0005 7 6 3.5845 -1.1960 0.0005 8 8 4.2657 -2.3720 0.0011 9 6 3.4926 -3.5697 -0.0974 10 6 4.4131 -4.7628 -0.1028 11 8 5.2106 -4.9175 0.7977 12 7 4.3502 -5.6579 -1.1084 13 6 5.1785 -6.7509 -1.1063 14 1 5.7641 -6.9863 -1.9827 15 6 5.2640 -7.5552 0.0227 16 7 4.9005 -7.0838 1.1944 17 14 5.8960 -9.3069 -0.1239 18 1 7.2814 -9.2902 -0.6585 19 1 5.8902 -9.9490 1.2150 20 1 5.0193 -10.0738 -1.0450 21 6 3.4406 -5.4723 -2.1536 22 6 3.8829 -5.4775 -3.4709 23 6 2.9816 -5.2944 -4.5008 24 6 1.6401 -5.1054 -4.2225 25 6 1.1965 -5.0985 -2.9125 26 6 2.0922 -5.2810 -1.8776 27 6 2.1972 -1.1967 -0.0049 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6563 2.1323 -0.0004 32 1 4.5107 2.8233 -1.0289 33 1 3.7387 3.2665 0.5125 34 1 5.2828 2.3811 0.5126 35 1 5.3552 0.0104 -0.0014 36 1 2.9134 -3.5534 -1.0207 37 1 2.8161 -3.6365 0.7546 38 1 5.0197 -7.6226 1.9922 39 1 4.9310 -5.6204 -3.6887 40 1 3.3247 -5.2980 -5.5249 41 1 0.9374 -4.9620 -5.0300 42 1 0.1482 -4.9510 -2.6988 43 1 1.7452 -5.2751 -0.8549 44 1 1.6572 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523305476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:34 Heat of formation + Delta-G solvation = 4.324226 kcal Electronic energy + Delta-G solvation = -27273.988109 eV Core-core repulsion = 23543.652718 eV Total energy + Delta-G solvation = -3730.335391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18040 -39.39913 -37.80016 -37.01488 -34.19472 -33.51970 -32.20178 -30.90863 -30.51841 -28.68220 -28.10024 -27.19608 -26.52862 -24.58170 -22.33385 -21.78754 -21.48802 -20.75344 -19.39064 -17.51745 -17.26229 -16.73744 -15.87747 -15.78135 -15.66556 -15.33422 -14.62600 -14.50736 -14.10069 -13.91367 -13.79904 -13.66899 -13.26304 -13.17409 -12.92433 -12.89128 -12.75833 -12.57709 -12.27161 -12.05874 -11.72991 -11.70818 -11.57110 -11.36844 -11.03875 -10.94444 -10.72827 -10.67636 -10.58267 -10.40888 -10.24663 -9.03898 -8.67784 -8.53595 -8.45091 -8.00819 -7.90975 -7.17058 -6.02949 -4.10606 1.41402 1.59724 1.85776 1.89806 3.21942 3.24831 3.29099 3.30535 3.83561 4.07957 4.20096 4.58100 4.75556 4.77035 4.85696 5.03158 5.19086 5.26123 5.32631 5.36435 5.39549 5.43139 5.46618 5.52131 5.55200 5.57836 5.64234 5.64969 5.76997 5.77950 5.81924 5.93001 5.96234 6.06880 6.22625 6.42046 6.49590 6.51061 6.60133 6.69104 6.86793 6.94586 6.96948 7.12293 7.41115 7.58318 7.72398 8.18108 8.87264 8.95222 9.41940 10.06776 10.81680 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003969 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.327957 B = 7053.062769 C = 8266.401747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.169 4.169 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.162 4.162 7 C 0.149 3.851 8 O -0.293 6.293 9 C 0.035 3.965 10 C 0.475 3.525 11 O -0.452 6.452 12 N -0.416 5.416 13 C -0.359 4.359 14 H 0.088 0.912 15 C 0.056 3.944 16 N -0.802 5.802 17 Si 0.912 3.088 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.182 3.818 22 C -0.136 4.136 23 C -0.104 4.104 24 C -0.157 4.157 25 C -0.104 4.104 26 C -0.159 4.159 27 C -0.216 4.216 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 13.013 -5.907 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.187 4.187 4 C -0.048 4.048 5 C -0.169 4.169 6 C -0.181 4.181 7 C 0.102 3.898 8 O -0.205 6.205 9 C -0.043 4.043 10 C 0.261 3.739 11 O -0.322 6.322 12 N -0.135 5.135 13 C -0.484 4.484 14 H 0.105 0.895 15 C -0.156 4.156 16 N -0.435 5.435 17 Si 0.738 3.262 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.087 3.913 22 C -0.157 4.157 23 C -0.122 4.122 24 C -0.176 4.176 25 C -0.123 4.123 26 C -0.180 4.180 27 C -0.234 4.234 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.297 12.835 -5.066 16.101 hybrid contribution -0.036 -1.142 0.028 1.143 sum -8.333 11.692 -5.038 15.216 Atomic orbital electron populations 1.20799 0.91228 1.02687 1.02348 1.19636 0.95774 0.92448 0.96646 1.20696 0.93352 0.97244 1.07391 1.19612 0.93596 0.94396 0.97179 1.20775 0.99982 0.93754 1.02344 1.20272 1.00274 0.89261 1.08291 1.19115 0.90540 0.86325 0.93786 1.86126 1.35415 1.11792 1.87175 1.23269 0.95142 0.83580 1.02325 1.19542 0.86565 0.82743 0.85088 1.90641 1.36353 1.72023 1.33137 1.41112 1.32612 1.21503 1.18294 1.18959 1.25074 1.01764 1.02640 0.89461 1.25581 0.96837 0.98377 0.94839 1.70371 1.41521 1.33973 0.97588 0.86278 0.79209 0.83263 0.77494 1.19923 1.21012 1.19770 1.18327 0.89246 0.94111 0.89590 1.21167 1.00052 1.02627 0.91829 1.20932 0.93296 0.99621 0.98375 1.20903 0.95716 1.04785 0.96217 1.20866 0.98694 1.00079 0.92636 1.21281 0.92265 1.05054 0.99368 1.21153 0.93090 0.98925 1.10270 0.91042 0.91489 0.91578 0.86358 0.91075 0.91547 0.91383 0.85340 0.90266 0.90602 0.92689 0.85937 0.86597 0.86898 0.86630 0.86475 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.04 -0.59 5.88 -104.64 -0.62 -1.20 16 3 C -0.17 -2.08 9.35 -39.56 -0.37 -2.45 16 4 C -0.05 -0.62 5.88 -104.65 -0.62 -1.23 16 5 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 6 C -0.16 -2.54 9.64 -39.43 -0.38 -2.92 16 7 C 0.15 2.64 6.68 -39.21 -0.26 2.38 16 8 O -0.29 -6.22 10.10 -28.61 -0.29 -6.51 16 9 C 0.04 0.74 4.01 36.01 0.14 0.89 16 10 C 0.48 12.44 6.63 -10.99 -0.07 12.36 16 11 O -0.45 -13.77 14.01 -3.62 -0.05 -13.82 16 12 N -0.42 -10.59 2.71 -58.98 -0.16 -10.75 16 13 C -0.36 -9.83 8.66 -14.93 -0.13 -9.96 16 14 H 0.09 2.30 7.68 -52.49 -0.40 1.89 16 15 C 0.06 1.54 5.32 -17.49 -0.09 1.44 16 16 N -0.80 -23.53 10.13 55.49 0.56 -22.97 16 17 Si 0.91 21.00 29.60 -169.99 -5.03 15.96 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.18 3.87 4.85 -83.69 -0.41 3.46 16 22 C -0.14 -2.57 9.52 -39.37 -0.37 -2.95 16 23 C -0.10 -1.60 10.04 -39.61 -0.40 -1.99 16 24 C -0.16 -2.26 10.04 -39.53 -0.40 -2.65 16 25 C -0.10 -1.57 10.04 -39.62 -0.40 -1.97 16 26 C -0.16 -2.93 7.32 -39.37 -0.29 -3.22 16 27 C -0.22 -3.34 8.70 -39.43 -0.34 -3.68 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.08 1.51 4.50 -51.93 -0.23 1.28 16 37 H 0.08 1.50 7.53 -51.93 -0.39 1.11 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 2.31 7.82 -52.49 -0.41 1.90 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.12 2.14 7.34 -52.49 -0.39 1.75 16 44 H 0.13 1.87 6.31 -52.49 -0.33 1.54 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -33.10 368.87 -9.62 -42.72 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.93 Total: 4.94 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -4.28 Total: -15.13 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.40 Total: -33.72 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.34 Total: -20.33 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.10 -9.62 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523305476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.040 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds