Wall clock time and date at job start Tue Mar 31 2020 13:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38262 * 119.96842 * 2 1 4 4 C 1.38268 * 120.11058 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97309 * 179.97438 * 4 3 2 6 6 C 1.38147 * 120.05310 * 359.97438 * 4 3 2 7 7 C 1.38735 * 119.94808 * 359.97438 * 6 4 3 8 8 O 1.35900 * 120.05988 * 180.02562 * 7 6 4 9 9 C 1.42895 * 117.00135 * 184.48404 * 8 7 6 10 10 C 1.50699 * 109.47086 * 179.13607 * 9 8 7 11 11 O 1.21280 * 119.99802 * 55.14362 * 10 9 8 12 12 N 1.34772 * 119.99982 * 235.14235 * 10 9 8 13 13 C 1.37144 * 119.99881 * 180.66976 * 12 10 9 14 14 H 1.08000 * 119.99867 * 230.71267 * 13 12 10 15 15 C 1.38888 * 119.99942 * 50.71861 * 13 12 10 16 16 N 1.31422 * 120.00067 * 339.29894 * 15 13 12 17 17 Si 1.86799 * 120.00225 * 159.30625 * 15 13 12 18 18 H 1.48501 * 109.47233 * 59.99306 * 17 15 13 19 19 H 1.48497 * 109.47367 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46823 * 299.99633 * 17 15 13 21 21 C 1.39787 * 120.00495 * 0.66470 * 12 10 9 22 22 C 1.38962 * 120.07820 * 126.36981 * 21 12 10 23 23 C 1.38079 * 119.92308 * 179.97438 * 22 21 12 24 24 C 1.38306 * 120.07683 * 0.02562 * 23 22 21 25 25 C 1.38304 * 120.15675 * 0.02562 * 24 23 22 26 26 C 1.38079 * 120.08030 * 359.97438 * 25 24 23 27 27 C 1.38147 * 119.97128 * 180.23582 * 2 1 3 28 28 H 1.08995 * 109.47477 * 89.99711 * 1 2 3 29 29 H 1.09004 * 109.46954 * 210.00072 * 1 2 3 30 30 H 1.09003 * 109.46984 * 329.99521 * 1 2 3 31 31 H 1.08000 * 119.94665 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47517 * 269.97887 * 5 4 3 33 33 H 1.08996 * 109.46960 * 29.98270 * 5 4 3 34 34 H 1.08997 * 109.46975 * 149.98285 * 5 4 3 35 35 H 1.08000 * 120.02533 * 179.97438 * 6 4 3 36 36 H 1.09003 * 109.47050 * 59.13697 * 9 8 7 37 37 H 1.08995 * 109.47126 * 299.14321 * 9 8 7 38 38 H 0.97000 * 120.00122 * 184.38940 * 16 15 13 39 39 H 1.08002 * 120.03469 * 359.70591 * 22 21 12 40 40 H 1.08001 * 119.96358 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.91878 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.95977 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.04075 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.02966 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.3300 2.5085 -0.0011 6 6 4.2752 0.0072 -0.0005 7 6 3.5845 -1.1960 0.0005 8 8 4.2657 -2.3720 0.0011 9 6 3.4926 -3.5697 -0.0974 10 6 4.4131 -4.7628 -0.1028 11 8 5.2106 -4.9175 0.7977 12 7 4.3502 -5.6579 -1.1084 13 6 5.1785 -6.7509 -1.1063 14 1 5.7641 -6.9863 -1.9827 15 6 5.2640 -7.5552 0.0227 16 7 4.9005 -7.0838 1.1944 17 14 5.8960 -9.3069 -0.1239 18 1 7.2814 -9.2902 -0.6585 19 1 5.8902 -9.9490 1.2150 20 1 5.0193 -10.0738 -1.0450 21 6 3.4406 -5.4723 -2.1536 22 6 3.8829 -5.4775 -3.4709 23 6 2.9816 -5.2944 -4.5008 24 6 1.6401 -5.1054 -4.2225 25 6 1.1965 -5.0985 -2.9125 26 6 2.0922 -5.2810 -1.8776 27 6 2.1972 -1.1967 -0.0049 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6563 2.1323 -0.0004 32 1 4.5107 2.8233 -1.0289 33 1 3.7387 3.2665 0.5125 34 1 5.2828 2.3811 0.5126 35 1 5.3552 0.0104 -0.0014 36 1 2.9134 -3.5534 -1.0207 37 1 2.8161 -3.6365 0.7546 38 1 5.0197 -7.6226 1.9922 39 1 4.9310 -5.6204 -3.6887 40 1 3.3247 -5.2980 -5.5249 41 1 0.9374 -4.9620 -5.0300 42 1 0.1482 -4.9510 -2.6988 43 1 1.7452 -5.2751 -0.8549 44 1 1.6572 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523305476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:34 Heat of formation + Delta-G solvation = -13.507995 kcal Electronic energy + Delta-G solvation = -27274.761372 eV Core-core repulsion = 23543.652718 eV Total energy + Delta-G solvation = -3731.108654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64680 -40.82913 -39.26076 -38.53718 -36.07155 -34.47356 -34.15667 -32.17608 -31.80879 -30.24499 -29.64618 -28.07035 -27.66606 -26.47392 -23.76459 -23.22862 -22.71128 -21.93725 -21.04456 -19.18206 -18.68941 -18.41892 -17.43490 -17.04360 -16.97937 -16.85846 -16.28706 -16.09878 -15.77368 -15.29755 -14.93438 -14.76846 -14.56590 -14.44029 -14.22822 -14.08159 -13.96316 -13.79990 -13.57778 -13.38499 -13.29410 -13.07782 -12.78343 -12.65918 -12.56760 -12.36608 -12.32739 -12.10491 -11.97715 -11.81664 -11.66282 -10.92852 -10.58922 -9.91719 -9.75061 -9.59772 -9.15489 -8.94099 -8.06965 -6.23093 0.32746 0.45224 0.48816 0.54764 1.35863 1.41081 1.48735 1.63431 2.20327 2.56929 2.73264 2.95170 2.99551 3.15144 3.68494 3.84946 3.89610 3.96467 4.03158 4.13133 4.16430 4.20276 4.32962 4.36370 4.40932 4.47071 4.65769 4.68474 4.74536 4.82309 4.84101 4.88012 4.96713 5.00290 5.12931 5.20329 5.32223 5.37498 5.41019 5.55327 5.58284 5.65058 5.67536 5.71626 5.88811 6.04766 6.21028 6.38553 6.85760 6.98748 7.44232 8.12237 8.75178 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003969 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.327957 B = 7053.062769 C = 8266.401747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 C -0.162 4.162 4 C -0.045 4.045 5 C -0.110 4.110 6 C -0.184 4.184 7 C 0.110 3.890 8 O -0.327 6.327 9 C 0.060 3.940 10 C 0.458 3.542 11 O -0.518 6.518 12 N -0.426 5.426 13 C -0.377 4.377 14 H 0.087 0.913 15 C 0.000 4.000 16 N -0.841 5.841 17 Si 0.985 3.015 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.259 1.259 21 C 0.138 3.862 22 C -0.154 4.154 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.095 4.095 26 C -0.169 4.169 27 C -0.228 4.228 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.258 0.742 39 H 0.108 0.892 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.108 0.892 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 14.812 -8.644 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.045 4.045 3 C -0.180 4.180 4 C -0.045 4.045 5 C -0.167 4.167 6 C -0.203 4.203 7 C 0.065 3.935 8 O -0.241 6.241 9 C -0.018 4.018 10 C 0.246 3.754 11 O -0.393 6.393 12 N -0.145 5.145 13 C -0.503 4.503 14 H 0.105 0.895 15 C -0.208 4.208 16 N -0.474 5.474 17 Si 0.807 3.193 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.183 1.183 21 C 0.045 3.955 22 C -0.174 4.174 23 C -0.115 4.115 24 C -0.156 4.156 25 C -0.113 4.113 26 C -0.189 4.189 27 C -0.247 4.247 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.173 0.827 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.169 0.831 41 H 0.177 0.823 42 H 0.172 0.828 43 H 0.126 0.874 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.641 14.653 -7.874 20.303 hybrid contribution 0.886 -1.525 0.703 1.899 sum -10.756 13.127 -7.171 18.423 Atomic orbital electron populations 1.20879 0.88450 1.03894 1.03635 1.20090 0.97776 0.91664 0.94958 1.21177 0.93137 0.98445 1.05214 1.20050 0.94401 0.94653 0.95396 1.20861 0.99975 0.92258 1.03589 1.20486 1.00309 0.89881 1.09620 1.19506 0.91881 0.85403 0.96711 1.86047 1.36811 1.12826 1.88427 1.22856 0.93561 0.82211 1.03191 1.20374 0.86608 0.83794 0.84669 1.90574 1.39332 1.73753 1.35634 1.41240 1.33069 1.20942 1.19242 1.19296 1.25882 1.02597 1.02565 0.89519 1.26547 0.97433 1.02509 0.94270 1.70594 1.43545 1.35123 0.98171 0.85169 0.78913 0.77660 0.77547 1.19248 1.20878 1.18315 1.18577 0.89866 0.97837 0.89237 1.21239 1.00391 1.03829 0.91949 1.21327 0.93404 0.97791 0.98945 1.21469 0.95797 1.01319 0.97028 1.21299 0.99877 0.98018 0.92083 1.21317 0.91669 1.05725 1.00227 1.21274 0.92151 1.00246 1.11021 0.89520 0.91411 0.89334 0.82688 0.89649 0.89149 0.91405 0.86112 0.88429 0.90405 0.93269 0.87363 0.83091 0.82251 0.82758 0.87437 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 2 C -0.04 -1.08 5.88 -19.88 -0.12 -1.19 16 3 C -0.16 -3.50 9.35 22.28 0.21 -3.29 16 4 C -0.04 -1.09 5.88 -19.88 -0.12 -1.21 16 5 C -0.11 -1.81 10.01 71.23 0.71 -1.09 16 6 C -0.18 -5.98 9.64 22.37 0.22 -5.76 16 7 C 0.11 4.11 6.68 22.51 0.15 4.26 16 8 O -0.33 -15.13 10.10 -83.65 -0.85 -15.97 16 9 C 0.06 2.73 4.01 71.24 0.29 3.01 16 10 C 0.46 26.03 6.63 87.66 0.58 26.61 16 11 O -0.52 -34.51 14.01 5.75 0.08 -34.43 16 12 N -0.43 -23.17 2.71 -458.90 -1.25 -24.42 16 13 C -0.38 -21.96 8.66 84.02 0.73 -21.23 16 14 H 0.09 4.85 7.68 -2.91 -0.02 4.83 16 15 C 0.00 0.00 5.32 84.91 0.45 0.45 16 16 N -0.84 -52.72 10.13 21.65 0.22 -52.50 16 17 Si 0.98 45.00 29.60 68.60 2.03 47.03 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 21 C 0.14 6.05 4.85 38.22 0.19 6.24 16 22 C -0.15 -5.85 9.52 22.41 0.21 -5.64 16 23 C -0.10 -2.68 10.04 22.25 0.22 -2.45 16 24 C -0.14 -3.29 10.04 22.30 0.22 -3.06 16 25 C -0.09 -2.53 10.04 22.25 0.22 -2.31 16 26 C -0.17 -6.21 7.32 22.41 0.16 -6.05 16 27 C -0.23 -7.13 8.70 22.37 0.19 -6.93 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 34 H 0.07 1.12 8.08 -2.39 -0.02 1.11 16 35 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.10 3.95 4.50 -2.39 -0.01 3.94 16 37 H 0.08 3.37 7.53 -2.39 -0.02 3.35 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.11 4.28 7.82 -2.91 -0.02 4.26 16 40 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 42 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 43 H 0.11 4.07 7.34 -2.91 -0.02 4.05 16 44 H 0.13 3.81 6.31 -2.91 -0.02 3.79 16 Total: -1.00 -81.05 368.87 6.48 -74.57 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 1.00 Total: 26.46 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.24 Total: -20.73 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.03 Total: -76.92 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.76 Total: -50.40 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -81.05 6.48 -74.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523305476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.061 kcal (2) G-P(sol) polarization free energy of solvation -81.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds