Wall clock time and date at job start Tue Mar 31 2020 14:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 C 1.50703 * 109.46852 * 119.99363 * 2 1 3 5 5 C 1.38250 * 120.00294 * 305.43351 * 4 2 1 6 6 C 1.38222 * 119.99958 * 180.27562 * 5 4 2 7 7 C 1.38264 * 119.99705 * 359.74644 * 6 5 4 8 8 C 1.38207 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.38221 * 119.99578 * 125.17834 * 4 2 1 10 10 S 1.76202 * 119.99860 * 0.02562 * 9 4 2 11 11 O 1.42094 * 106.40428 * 52.07863 * 10 9 4 12 12 O 1.42103 * 106.40206 * 279.15540 * 10 9 4 13 13 N 1.65596 * 107.21495 * 165.61958 * 10 9 4 14 14 C 1.46505 * 120.00168 * 89.28856 * 13 10 9 15 15 C 1.50702 * 109.47214 * 94.03994 * 14 13 10 16 16 H 1.07996 * 119.99993 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99782 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00315 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47359 * 59.99364 * 19 17 15 21 21 H 1.48496 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46851 * 299.99565 * 19 17 15 23 23 C 1.46502 * 120.00104 * 269.28366 * 13 10 9 24 24 C 1.52998 * 109.47177 * 120.00158 * 23 13 10 25 25 C 1.52994 * 109.47417 * 240.00226 * 23 13 10 26 26 H 1.08998 * 109.47054 * 300.00410 * 1 2 3 27 27 H 1.09001 * 109.47153 * 60.00311 * 1 2 3 28 28 H 1.09005 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47054 * 239.99590 * 2 1 3 30 30 H 1.08995 * 109.47491 * 59.99357 * 3 2 1 31 31 H 1.09003 * 109.46862 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46628 * 299.99367 * 3 2 1 33 33 H 1.07999 * 120.00642 * 0.04310 * 5 4 2 34 34 H 1.07992 * 119.99995 * 179.76572 * 6 5 4 35 35 H 1.07998 * 119.99775 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.99900 * 179.97438 * 8 7 6 37 37 H 1.09009 * 109.47148 * 214.03863 * 14 13 10 38 38 H 1.08997 * 109.46820 * 334.03611 * 14 13 10 39 39 H 0.97000 * 120.00270 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47143 * 0.02562 * 23 13 10 41 41 H 1.09003 * 109.47416 * 60.00250 * 24 23 13 42 42 H 1.09001 * 109.47555 * 180.02562 * 24 23 13 43 43 H 1.09007 * 109.47172 * 300.00224 * 24 23 13 44 44 H 1.08997 * 109.47164 * 60.00406 * 25 23 13 45 45 H 1.09008 * 109.47057 * 179.97438 * 25 23 13 46 46 H 1.08995 * 109.47302 * 299.99490 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6083 -0.3069 2.4831 6 6 2.0734 -0.9547 3.6120 7 6 2.9587 -2.0096 3.4883 8 6 3.3781 -2.4165 2.2359 9 6 2.9129 -1.7685 1.1066 10 16 3.4485 -2.2864 -0.4901 11 8 3.9300 -1.1231 -1.1488 12 8 2.4119 -3.1042 -1.0154 13 7 4.7584 -3.2755 -0.2706 14 6 4.5662 -4.7166 -0.0903 15 6 4.6923 -5.4108 -1.4219 16 1 4.8958 -4.8361 -2.3134 17 6 4.5480 -6.7796 -1.5022 18 7 4.3007 -7.4795 -0.4166 19 14 4.7050 -7.6401 -3.1527 20 1 6.0557 -7.3881 -3.7159 21 1 4.5100 -9.1009 -2.9699 22 1 3.6745 -7.1155 -4.0845 23 6 6.1096 -2.7094 -0.2569 24 6 6.7728 -3.0051 1.0898 25 6 6.9366 -3.3362 -1.3811 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 0.9165 0.5168 2.5798 34 1 1.7452 -0.6372 4.5906 35 1 3.3225 -2.5155 4.3704 36 1 4.0699 -3.2402 2.1393 37 1 5.3232 -5.1015 0.5932 38 1 3.5751 -4.9019 0.3237 39 1 4.1995 -8.4426 -0.4730 40 1 6.0532 -1.6309 -0.4048 41 1 6.8292 -4.0835 1.2381 42 1 7.7779 -2.5835 1.1002 43 1 6.1836 -2.5585 1.8908 44 1 6.4642 -3.1255 -2.3406 45 1 7.9418 -2.9146 -1.3712 46 1 6.9931 -4.4145 -1.2329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527043700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:52 Heat of formation + Delta-G solvation = -59.890323 kcal Electronic energy + Delta-G solvation = -27507.058883 eV Core-core repulsion = 23909.382891 eV Total energy + Delta-G solvation = -3597.675992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.56599 -37.01328 -36.56240 -35.62926 -34.92132 -32.76677 -31.23197 -30.63368 -29.77403 -27.15091 -26.97984 -26.55336 -23.61421 -23.07627 -22.81516 -20.40626 -20.11314 -18.33275 -17.40632 -17.07934 -16.36869 -15.73721 -15.36060 -15.34816 -14.49016 -14.40374 -14.15845 -13.82350 -13.74488 -13.56614 -13.50784 -13.04390 -12.55745 -12.41966 -12.28914 -12.17103 -12.09014 -11.93968 -11.71488 -11.50481 -11.41790 -11.16442 -11.14717 -11.03898 -10.99504 -10.86329 -10.79661 -10.72009 -10.47110 -10.30392 -10.13194 -9.84156 -9.57253 -9.21362 -8.75457 -8.41308 -8.10922 -6.04432 -4.06495 0.96200 1.06447 1.35784 3.35125 3.38987 3.43353 3.52956 3.61500 4.26999 4.46193 4.51023 4.67770 4.93301 5.04369 5.11477 5.20331 5.24275 5.32374 5.34031 5.35609 5.44976 5.59548 5.63956 5.71149 5.76287 5.78699 5.83162 5.90306 6.00481 6.03391 6.10338 6.17549 6.24310 6.25878 6.28605 6.39668 6.41616 6.47491 6.54764 6.76580 6.92219 7.14015 7.23692 7.40244 7.62777 7.93289 8.22183 8.94452 9.57340 11.04418 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.004790 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.528297 B = 5843.690213 C = 6045.869646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.137 4.137 4 C 0.020 3.980 5 C -0.138 4.138 6 C -0.075 4.075 7 C -0.144 4.144 8 C -0.024 4.024 9 C -0.665 4.665 10 S 2.682 3.318 11 O -0.974 6.974 12 O -0.940 6.940 13 N -0.980 5.980 14 C 0.252 3.748 15 C -0.521 4.521 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.148 3.852 24 C -0.165 4.165 25 C -0.153 4.153 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 14.574 7.802 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.194 4.194 4 C 0.019 3.981 5 C -0.157 4.157 6 C -0.093 4.093 7 C -0.163 4.163 8 C -0.043 4.043 9 C -0.749 4.749 10 S 2.771 3.229 11 O -0.964 6.964 12 O -0.930 6.930 13 N -0.820 5.820 14 C 0.131 3.869 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.200 1.200 23 C 0.041 3.959 24 C -0.223 4.223 25 C -0.211 4.211 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.812 14.619 7.118 16.361 hybrid contribution 0.023 -0.693 0.045 0.695 sum -1.789 13.926 7.164 15.763 Atomic orbital electron populations 1.21899 0.93314 1.02894 1.02250 1.20508 0.97063 0.97717 0.94882 1.21771 1.02286 0.93561 1.01805 1.19414 0.91735 0.91496 0.95470 1.21007 1.01601 1.01206 0.91876 1.21334 0.95004 0.94531 0.98414 1.21248 0.99256 0.98172 0.97619 1.21055 0.95431 0.96311 0.91496 1.31332 1.11636 1.07801 1.24133 1.02431 0.73605 0.72877 0.73984 1.93515 1.80940 1.49932 1.71989 1.93635 1.56049 1.67543 1.75809 1.57521 1.16959 1.19575 1.87994 1.19140 0.97691 0.72194 0.97923 1.21443 1.48617 0.91962 0.94045 0.91909 1.24898 0.95044 0.97350 0.96646 1.69897 1.48934 1.07098 1.27670 0.86630 0.78736 0.78281 0.84268 1.20163 1.21279 1.20032 1.20701 0.82267 0.97212 0.95683 1.22228 0.99919 1.03343 0.96854 1.22117 0.97456 1.03612 0.97958 0.92120 0.91633 0.91786 0.90622 0.92517 0.91488 0.91817 0.85490 0.85666 0.85358 0.84147 0.94011 0.94482 0.92699 0.89870 0.91046 0.92216 0.93132 0.92685 0.93407 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.94 37.16 0.33 -1.46 16 2 C -0.08 -1.23 2.61 -91.77 -0.24 -1.47 16 3 C -0.14 -1.68 9.06 37.16 0.34 -1.35 16 4 C 0.02 0.32 4.78 -104.62 -0.50 -0.18 16 5 C -0.14 -1.76 8.76 -39.58 -0.35 -2.11 16 6 C -0.07 -0.88 10.05 -39.58 -0.40 -1.28 16 7 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 8 C -0.02 -0.38 9.36 -39.59 -0.37 -0.76 16 9 C -0.67 -11.74 5.83 -39.58 -0.23 -11.97 16 10 S 2.68 55.66 4.26 -107.50 -0.46 55.20 16 11 O -0.97 -20.23 14.80 -57.17 -0.85 -21.07 16 12 O -0.94 -23.24 17.03 -57.17 -0.97 -24.22 16 13 N -0.98 -20.03 1.84 -108.57 -0.20 -20.23 16 14 C 0.25 6.04 4.00 -5.19 -0.02 6.02 16 15 C -0.52 -14.05 7.58 -34.44 -0.26 -14.31 16 16 H 0.06 1.70 7.17 -52.49 -0.38 1.32 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.15 2.57 3.24 -67.93 -0.22 2.35 16 24 C -0.16 -2.40 9.16 37.16 0.34 -2.06 16 25 C -0.15 -2.69 8.25 37.15 0.31 -2.38 16 26 H 0.06 0.60 7.10 -51.93 -0.37 0.23 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.32 5.12 -51.82 -0.27 1.05 16 30 H 0.06 0.57 7.73 -51.93 -0.40 0.16 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.13 1.25 7.11 -52.49 -0.37 0.88 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.14 2.20 6.19 -52.49 -0.32 1.88 16 37 H 0.04 0.99 6.44 -51.92 -0.33 0.66 16 38 H 0.04 0.96 7.66 -51.93 -0.40 0.57 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.08 1.37 6.89 -51.93 -0.36 1.01 16 41 H 0.07 1.12 6.68 -51.93 -0.35 0.78 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.67 7.35 -51.92 -0.38 0.29 16 44 H 0.05 1.02 7.96 -51.93 -0.41 0.61 16 45 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 46 H 0.08 1.67 6.71 -51.93 -0.35 1.32 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -32.19 372.62 -10.12 -42.31 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.21 Total: 2.30 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -1.77 Total: -31.59 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.54 Total: -45.08 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.82 Total: -45.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 55.66 SS G_CDS: -0.46 Total: 55.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.19 -10.12 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527043700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.583 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds