Wall clock time and date at job start Tue Mar 31 2020 14:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 C 1.50703 * 109.46852 * 119.99363 * 2 1 3 5 5 C 1.38250 * 120.00294 * 305.43351 * 4 2 1 6 6 C 1.38222 * 119.99958 * 180.27562 * 5 4 2 7 7 C 1.38264 * 119.99705 * 359.74644 * 6 5 4 8 8 C 1.38207 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.38221 * 119.99578 * 125.17834 * 4 2 1 10 10 S 1.76202 * 119.99860 * 0.02562 * 9 4 2 11 11 O 1.42094 * 106.40428 * 52.07863 * 10 9 4 12 12 O 1.42103 * 106.40206 * 279.15540 * 10 9 4 13 13 N 1.65596 * 107.21495 * 165.61958 * 10 9 4 14 14 C 1.46505 * 120.00168 * 89.28856 * 13 10 9 15 15 C 1.50702 * 109.47214 * 94.03994 * 14 13 10 16 16 H 1.07996 * 119.99993 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99782 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00315 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47359 * 59.99364 * 19 17 15 21 21 H 1.48496 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46851 * 299.99565 * 19 17 15 23 23 C 1.46502 * 120.00104 * 269.28366 * 13 10 9 24 24 C 1.52998 * 109.47177 * 120.00158 * 23 13 10 25 25 C 1.52994 * 109.47417 * 240.00226 * 23 13 10 26 26 H 1.08998 * 109.47054 * 300.00410 * 1 2 3 27 27 H 1.09001 * 109.47153 * 60.00311 * 1 2 3 28 28 H 1.09005 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47054 * 239.99590 * 2 1 3 30 30 H 1.08995 * 109.47491 * 59.99357 * 3 2 1 31 31 H 1.09003 * 109.46862 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46628 * 299.99367 * 3 2 1 33 33 H 1.07999 * 120.00642 * 0.04310 * 5 4 2 34 34 H 1.07992 * 119.99995 * 179.76572 * 6 5 4 35 35 H 1.07998 * 119.99775 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.99900 * 179.97438 * 8 7 6 37 37 H 1.09009 * 109.47148 * 214.03863 * 14 13 10 38 38 H 1.08997 * 109.46820 * 334.03611 * 14 13 10 39 39 H 0.97000 * 120.00270 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47143 * 0.02562 * 23 13 10 41 41 H 1.09003 * 109.47416 * 60.00250 * 24 23 13 42 42 H 1.09001 * 109.47555 * 180.02562 * 24 23 13 43 43 H 1.09007 * 109.47172 * 300.00224 * 24 23 13 44 44 H 1.08997 * 109.47164 * 60.00406 * 25 23 13 45 45 H 1.09008 * 109.47057 * 179.97438 * 25 23 13 46 46 H 1.08995 * 109.47302 * 299.99490 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6083 -0.3069 2.4831 6 6 2.0734 -0.9547 3.6120 7 6 2.9587 -2.0096 3.4883 8 6 3.3781 -2.4165 2.2359 9 6 2.9129 -1.7685 1.1066 10 16 3.4485 -2.2864 -0.4901 11 8 3.9300 -1.1231 -1.1488 12 8 2.4119 -3.1042 -1.0154 13 7 4.7584 -3.2755 -0.2706 14 6 4.5662 -4.7166 -0.0903 15 6 4.6923 -5.4108 -1.4219 16 1 4.8958 -4.8361 -2.3134 17 6 4.5480 -6.7796 -1.5022 18 7 4.3007 -7.4795 -0.4166 19 14 4.7050 -7.6401 -3.1527 20 1 6.0557 -7.3881 -3.7159 21 1 4.5100 -9.1009 -2.9699 22 1 3.6745 -7.1155 -4.0845 23 6 6.1096 -2.7094 -0.2569 24 6 6.7728 -3.0051 1.0898 25 6 6.9366 -3.3362 -1.3811 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 0.9165 0.5168 2.5798 34 1 1.7452 -0.6372 4.5906 35 1 3.3225 -2.5155 4.3704 36 1 4.0699 -3.2402 2.1393 37 1 5.3232 -5.1015 0.5932 38 1 3.5751 -4.9019 0.3237 39 1 4.1995 -8.4426 -0.4730 40 1 6.0532 -1.6309 -0.4048 41 1 6.8292 -4.0835 1.2381 42 1 7.7779 -2.5835 1.1002 43 1 6.1836 -2.5585 1.8908 44 1 6.4642 -3.1255 -2.3406 45 1 7.9418 -2.9146 -1.3712 46 1 6.9931 -4.4145 -1.2329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527043700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:51 Heat of formation + Delta-G solvation = -79.462706 kcal Electronic energy + Delta-G solvation = -27507.907605 eV Core-core repulsion = 23909.382891 eV Total energy + Delta-G solvation = -3598.524714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64415 -38.58215 -38.23705 -37.09035 -36.25748 -34.80239 -32.42786 -32.17435 -30.82283 -28.89380 -28.08942 -27.91471 -24.83233 -24.63960 -24.20730 -21.86331 -21.23350 -19.81278 -18.94482 -18.66267 -18.26675 -17.09445 -16.89989 -16.49424 -16.41282 -15.57624 -15.41365 -15.15449 -14.96564 -14.85349 -14.69254 -14.59527 -14.09386 -13.80762 -13.51338 -13.49392 -13.42942 -13.16931 -13.01859 -13.00436 -12.95703 -12.90569 -12.74553 -12.63897 -12.41496 -12.23173 -12.18366 -12.08837 -12.03765 -11.80670 -11.56203 -11.43539 -11.35060 -10.54875 -10.32490 -9.84211 -9.80467 -8.17093 -6.25137 -0.53578 -0.14674 0.29705 1.38696 1.42125 1.48725 1.97998 2.42567 2.53257 2.73382 3.14533 3.44313 3.56819 3.64063 3.85632 3.94556 4.12751 4.14126 4.24352 4.29078 4.31634 4.37093 4.41446 4.54266 4.72049 4.73872 4.78348 4.87173 4.88860 4.92264 4.96013 5.04453 5.08771 5.10389 5.11189 5.20893 5.23121 5.32376 5.35538 5.36812 5.38729 5.55443 5.66158 5.78920 5.90653 5.98209 6.15447 6.80282 7.41138 8.90835 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.004790 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.528297 B = 5843.690213 C = 6045.869646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.134 4.134 4 C 0.004 3.996 5 C -0.134 4.134 6 C -0.059 4.059 7 C -0.144 4.144 8 C -0.044 4.044 9 C -0.685 4.685 10 S 2.683 3.317 11 O -0.986 6.986 12 O -0.998 6.998 13 N -0.983 5.983 14 C 0.272 3.728 15 C -0.533 4.533 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.924 5.924 19 Si 0.947 3.053 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.282 1.282 23 C 0.137 3.863 24 C -0.157 4.157 25 C -0.150 4.150 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.131 0.869 37 H 0.043 0.957 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.085 0.915 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 16.782 10.258 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.191 4.191 4 C 0.002 3.998 5 C -0.153 4.153 6 C -0.076 4.076 7 C -0.163 4.163 8 C -0.063 4.063 9 C -0.774 4.774 10 S 2.779 3.221 11 O -0.976 6.976 12 O -0.988 6.988 13 N -0.823 5.823 14 C 0.149 3.851 15 C -0.573 4.573 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.564 5.564 19 Si 0.772 3.228 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.208 1.208 23 C 0.032 3.968 24 C -0.215 4.215 25 C -0.209 4.209 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.182 0.818 34 H 0.190 0.810 35 H 0.176 0.824 36 H 0.149 0.851 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.884 16.820 9.513 19.415 hybrid contribution 0.024 -1.261 -0.624 1.407 sum -1.860 15.559 8.888 18.015 Atomic orbital electron populations 1.21930 0.91411 1.02278 1.04571 1.20638 0.98777 0.98770 0.93183 1.21782 1.01148 0.92182 1.03957 1.19707 0.91643 0.91161 0.97284 1.21443 1.01417 1.01852 0.90564 1.21908 0.92834 0.92705 1.00172 1.21641 0.99001 0.98531 0.97086 1.21142 0.96197 0.96493 0.92498 1.30645 1.14583 1.10332 1.21848 1.01841 0.72841 0.72274 0.75170 1.93477 1.80967 1.49630 1.73573 1.93551 1.57848 1.69076 1.78348 1.57345 1.18394 1.18088 1.88467 1.18666 0.96000 0.74095 0.96375 1.21744 1.48142 0.92454 0.94945 0.92914 1.25630 0.94951 0.98101 0.99798 1.69984 1.49838 1.07344 1.29273 0.85776 0.79013 0.77581 0.80384 1.18700 1.20245 1.20770 1.21030 0.80890 0.97513 0.97393 1.22163 1.01522 1.02572 0.95265 1.22090 0.99498 1.02242 0.97106 0.88849 0.90298 0.93853 0.94589 0.89355 0.93287 0.90680 0.81772 0.80984 0.82379 0.85132 0.93868 0.97292 0.92531 0.88861 0.92630 0.89072 0.91891 0.94654 0.89647 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.94 71.98 0.64 -2.71 16 2 C -0.09 -2.79 2.61 -11.54 -0.03 -2.82 16 3 C -0.13 -3.06 9.06 71.98 0.65 -2.41 16 4 C 0.00 0.11 4.78 -19.86 -0.09 0.02 16 5 C -0.13 -2.89 8.76 22.27 0.19 -2.69 16 6 C -0.06 -1.09 10.05 22.27 0.22 -0.87 16 7 C -0.14 -3.31 10.05 22.27 0.22 -3.09 16 8 C -0.04 -1.39 9.36 22.27 0.21 -1.19 16 9 C -0.68 -24.63 5.83 22.27 0.13 -24.50 16 10 S 2.68 118.56 4.26 -56.49 -0.24 118.32 16 11 O -0.99 -43.40 14.80 -128.00 -1.90 -45.30 16 12 O -1.00 -53.51 17.03 -128.00 -2.18 -55.69 16 13 N -0.98 -42.36 1.84 -497.40 -0.92 -43.27 16 14 C 0.27 13.80 4.00 85.63 0.34 14.14 16 15 C -0.53 -30.18 7.58 25.60 0.19 -29.99 16 16 H 0.05 3.01 7.17 -2.91 -0.02 2.99 16 17 C 0.01 0.82 5.46 84.66 0.46 1.28 16 18 N -0.92 -54.29 13.29 21.44 0.28 -54.01 16 19 Si 0.95 45.23 29.54 68.60 2.03 47.25 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 23 C 0.14 4.85 3.24 44.99 0.15 4.99 16 24 C -0.16 -4.45 9.16 71.98 0.66 -3.79 16 25 C -0.15 -5.40 8.25 71.98 0.59 -4.81 16 26 H 0.09 1.50 7.10 -2.39 -0.02 1.49 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.04 1.33 5.12 -2.46 -0.01 1.31 16 30 H 0.09 1.42 7.73 -2.39 -0.02 1.40 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.16 2.26 7.11 -2.91 -0.02 2.24 16 34 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.13 4.23 6.19 -2.91 -0.02 4.22 16 37 H 0.04 2.16 6.44 -2.38 -0.02 2.15 16 38 H 0.01 0.51 7.66 -2.39 -0.02 0.49 16 39 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.09 3.10 6.89 -2.39 -0.02 3.09 16 41 H 0.05 1.76 6.68 -2.39 -0.02 1.74 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 1.62 7.35 -2.38 -0.02 1.60 16 44 H 0.03 1.36 7.96 -2.39 -0.02 1.34 16 45 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.06 2.45 6.71 -2.39 -0.02 2.43 16 Total: -1.00 -75.34 372.62 2.59 -72.75 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.96 Total: 18.36 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 4.55 Total: -58.42 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -0.63 Total: -97.28 kcal Atomic # 8 Polarization: -96.91 SS G_CDS: -4.08 Total: -100.99 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 118.56 SS G_CDS: -0.24 Total: 118.32 kcal Total: -75.34 2.59 -72.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527043700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.711 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds